Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0228 and Ga0059261_0229 are separated by 120 nucleotides Ga0059261_0229 and Ga0059261_0230 overlap by 4 nucleotides Ga0059261_0230 and Ga0059261_0231 are separated by 41 nucleotides Ga0059261_0231 and Ga0059261_0232 overlap by 4 nucleotides
Ga0059261_0228: Ga0059261_0228 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 219,012 to 220,106
_0228
Ga0059261_0229: Ga0059261_0229 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 220,227 to 220,793
_0229
Ga0059261_0230: Ga0059261_0230 - Uncharacterized protein conserved in bacteria, at 220,790 to 221,167
_0230
Ga0059261_0231: Ga0059261_0231 - Metal-dependent hydrolase, at 221,209 to 221,904
_0231
Ga0059261_0232: Ga0059261_0232 - patatin-related protein, at 221,901 to 224,204
_0232
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1 at 220.097 kb on + strand at 220.097 kb on + strand at 220.097 kb on + strand at 220.097 kb on + strand at 220.097 kb on + strand at 220.098 kb on - strand at 220.098 kb on - strand at 220.098 kb on - strand at 220.111 kb on + strand at 220.111 kb on + strand at 220.112 kb on - strand at 220.315 kb on - strand, within Ga0059261_0229 at 220.428 kb on + strand, within Ga0059261_0229 at 220.429 kb on - strand, within Ga0059261_0229 at 220.429 kb on - strand, within Ga0059261_0229 at 220.429 kb on - strand, within Ga0059261_0229 at 220.491 kb on + strand, within Ga0059261_0229 at 220.491 kb on + strand, within Ga0059261_0229 at 220.491 kb on + strand, within Ga0059261_0229 at 220.493 kb on + strand at 220.493 kb on + strand, within Ga0059261_0229 at 220.494 kb on - strand, within Ga0059261_0229 at 220.494 kb on - strand, within Ga0059261_0229 at 220.547 kb on + strand, within Ga0059261_0229 at 220.572 kb on + strand, within Ga0059261_0229 at 220.572 kb on + strand at 220.573 kb on - strand, within Ga0059261_0229 at 220.573 kb on - strand at 220.573 kb on - strand, within Ga0059261_0229 at 220.573 kb on - strand, within Ga0059261_0229 at 220.573 kb on - strand at 220.573 kb on - strand, within Ga0059261_0229 at 220.573 kb on - strand, within Ga0059261_0229 at 220.759 kb on - strand at 220.916 kb on + strand, within Ga0059261_0230 at 220.917 kb on - strand, within Ga0059261_0230 at 221.018 kb on + strand, within Ga0059261_0230 at 221.018 kb on + strand, within Ga0059261_0230 at 221.018 kb on + strand, within Ga0059261_0230 at 221.019 kb on - strand, within Ga0059261_0230 at 221.019 kb on - strand, within Ga0059261_0230 at 221.019 kb on - strand, within Ga0059261_0230 at 221.021 kb on + strand, within Ga0059261_0230 at 221.022 kb on - strand, within Ga0059261_0230 at 221.033 kb on + strand, within Ga0059261_0230 at 221.033 kb on + strand, within Ga0059261_0230 at 221.033 kb on + strand, within Ga0059261_0230 at 221.227 kb on + strand at 221.227 kb on + strand at 221.227 kb on + strand at 221.227 kb on + strand at 221.227 kb on + strand at 221.227 kb on + strand at 221.228 kb on - strand at 221.228 kb on - strand at 221.228 kb on - strand at 221.228 kb on - strand at 221.228 kb on - strand at 221.228 kb on - strand at 221.232 kb on + strand at 221.232 kb on + strand at 221.232 kb on + strand at 221.232 kb on + strand at 221.232 kb on + strand at 221.232 kb on + strand at 221.233 kb on - strand at 221.233 kb on - strand at 221.233 kb on - strand at 221.949 kb on + strand at 221.949 kb on + strand at 221.950 kb on - strand at 221.950 kb on - strand at 221.973 kb on + strand at 221.973 kb on + strand at 221.973 kb on + strand at 221.974 kb on - strand at 221.974 kb on - strand at 221.974 kb on - strand at 221.974 kb on - strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.976 kb on - strand at 221.976 kb on - strand at 221.976 kb on - strand at 221.976 kb on - strand at 222.069 kb on + strand at 222.070 kb on - strand at 222.070 kb on - strand at 222.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 220,097 + -0.5 220,097 + -0.7 220,097 + -0.1 220,097 + -0.1 220,097 + +0.1 220,098 - -0.0 220,098 - -0.9 220,098 - -0.2 220,111 + -1.3 220,111 + +0.3 220,112 - -0.9 220,315 - Ga0059261_0229 0.16 +0.2 220,428 + Ga0059261_0229 0.35 +0.0 220,429 - Ga0059261_0229 0.36 +1.4 220,429 - Ga0059261_0229 0.36 +0.2 220,429 - Ga0059261_0229 0.36 -0.1 220,491 + Ga0059261_0229 0.47 +1.3 220,491 + Ga0059261_0229 0.47 +0.1 220,491 + Ga0059261_0229 0.47 -0.0 220,493 + +1.4 220,493 + Ga0059261_0229 0.47 -0.3 220,494 - Ga0059261_0229 0.47 +1.4 220,494 - Ga0059261_0229 0.47 +0.4 220,547 + Ga0059261_0229 0.56 -0.7 220,572 + Ga0059261_0229 0.61 -0.9 220,572 + +1.7 220,573 - Ga0059261_0229 0.61 +1.3 220,573 - -0.3 220,573 - Ga0059261_0229 0.61 -0.0 220,573 - Ga0059261_0229 0.61 -0.2 220,573 - -0.3 220,573 - Ga0059261_0229 0.61 -0.3 220,573 - Ga0059261_0229 0.61 -0.0 220,759 - +0.1 220,916 + Ga0059261_0230 0.33 -0.0 220,917 - Ga0059261_0230 0.34 -0.8 221,018 + Ga0059261_0230 0.60 -0.2 221,018 + Ga0059261_0230 0.60 +0.6 221,018 + Ga0059261_0230 0.60 +0.1 221,019 - Ga0059261_0230 0.61 +0.3 221,019 - Ga0059261_0230 0.61 -0.0 221,019 - Ga0059261_0230 0.61 +0.1 221,021 + Ga0059261_0230 0.61 +0.1 221,022 - Ga0059261_0230 0.61 +0.7 221,033 + Ga0059261_0230 0.64 +0.8 221,033 + Ga0059261_0230 0.64 +0.1 221,033 + Ga0059261_0230 0.64 -0.8 221,227 + -0.5 221,227 + -0.1 221,227 + -0.4 221,227 + -0.5 221,227 + +0.7 221,227 + -0.4 221,228 - -0.1 221,228 - -0.5 221,228 - -0.7 221,228 - -1.1 221,228 - +1.1 221,228 - +0.0 221,232 + +0.6 221,232 + -0.6 221,232 + -0.3 221,232 + -0.3 221,232 + +0.6 221,232 + +0.5 221,233 - +0.3 221,233 - -0.7 221,233 - +1.0 221,949 + -0.3 221,949 + +0.2 221,950 - +0.0 221,950 - -0.8 221,973 + -0.1 221,973 + -0.3 221,973 + -0.2 221,974 - +0.1 221,974 - -0.2 221,974 - -0.1 221,974 - +0.2 221,975 + +0.7 221,975 + +0.1 221,975 + -0.2 221,975 + -0.5 221,975 + -0.6 221,975 + +0.0 221,975 + -0.0 221,976 - +0.3 221,976 - -0.3 221,976 - +0.9 221,976 - -0.3 222,069 + -0.0 222,070 - +0.2 222,070 - +0.6 222,070 - +0.6
Or see this region's nucleotide sequence