Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21190

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21180 and BWI76_RS21185 overlap by 10 nucleotidesBWI76_RS21185 and BWI76_RS21190 are separated by 124 nucleotidesBWI76_RS21190 and BWI76_RS21195 overlap by 4 nucleotides BWI76_RS21180: BWI76_RS21180 - nickel transporter, at 4,433,883 to 4,434,863 _RS21180 BWI76_RS21185: BWI76_RS21185 - hypothetical protein, at 4,434,854 to 4,435,492 _RS21185 BWI76_RS21190: BWI76_RS21190 - stationary phase inducible protein CsiE, at 4,435,617 to 4,436,894 _RS21190 BWI76_RS21195: BWI76_RS21195 - 3-phenylpropionic acid transporter, at 4,436,891 to 4,438,024 _RS21195 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -1 0 1 2at 4434.706 kb on - strand, within BWI76_RS21180at 4434.898 kb on + strandat 4435.053 kb on + strand, within BWI76_RS21185at 4435.066 kb on + strand, within BWI76_RS21185at 4435.126 kb on + strand, within BWI76_RS21185at 4435.134 kb on - strand, within BWI76_RS21185at 4435.141 kb on - strand, within BWI76_RS21185at 4435.311 kb on + strand, within BWI76_RS21185at 4435.329 kb on - strand, within BWI76_RS21185at 4435.493 kb on - strandat 4435.677 kb on + strandat 4435.747 kb on - strand, within BWI76_RS21190at 4435.758 kb on + strand, within BWI76_RS21190at 4436.107 kb on + strand, within BWI76_RS21190at 4436.115 kb on - strand, within BWI76_RS21190at 4436.115 kb on - strand, within BWI76_RS21190at 4436.127 kb on - strand, within BWI76_RS21190at 4436.410 kb on - strand, within BWI76_RS21190at 4436.410 kb on - strand, within BWI76_RS21190at 4436.554 kb on + strand, within BWI76_RS21190at 4436.562 kb on - strand, within BWI76_RS21190at 4436.685 kb on - strand, within BWI76_RS21190at 4436.698 kb on + strand, within BWI76_RS21190at 4436.698 kb on + strand, within BWI76_RS21190at 4436.706 kb on - strand, within BWI76_RS21190at 4436.780 kb on + strandat 4437.033 kb on - strand, within BWI76_RS21195at 4437.147 kb on + strand, within BWI76_RS21195at 4437.434 kb on - strand, within BWI76_RS21195at 4437.522 kb on - strand, within BWI76_RS21195at 4437.539 kb on - strand, within BWI76_RS21195at 4437.577 kb on + strand, within BWI76_RS21195at 4437.779 kb on + strand, within BWI76_RS21195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
4,434,706 - BWI76_RS21180 0.84 -0.1
4,434,898 + +0.9
4,435,053 + BWI76_RS21185 0.31 -0.1
4,435,066 + BWI76_RS21185 0.33 -0.4
4,435,126 + BWI76_RS21185 0.43 +1.3
4,435,134 - BWI76_RS21185 0.44 +0.2
4,435,141 - BWI76_RS21185 0.45 +0.0
4,435,311 + BWI76_RS21185 0.72 +0.4
4,435,329 - BWI76_RS21185 0.74 +0.2
4,435,493 - -0.5
4,435,677 + +0.4
4,435,747 - BWI76_RS21190 0.10 +0.5
4,435,758 + BWI76_RS21190 0.11 +1.1
4,436,107 + BWI76_RS21190 0.38 +0.1
4,436,115 - BWI76_RS21190 0.39 -0.1
4,436,115 - BWI76_RS21190 0.39 +0.4
4,436,127 - BWI76_RS21190 0.40 +0.4
4,436,410 - BWI76_RS21190 0.62 +0.7
4,436,410 - BWI76_RS21190 0.62 +0.9
4,436,554 + BWI76_RS21190 0.73 +0.5
4,436,562 - BWI76_RS21190 0.74 -0.4
4,436,685 - BWI76_RS21190 0.84 +0.4
4,436,698 + BWI76_RS21190 0.85 +1.5
4,436,698 + BWI76_RS21190 0.85 +1.8
4,436,706 - BWI76_RS21190 0.85 +0.7
4,436,780 + -0.6
4,437,033 - BWI76_RS21195 0.13 -0.1
4,437,147 + BWI76_RS21195 0.23 -0.5
4,437,434 - BWI76_RS21195 0.48 +0.8
4,437,522 - BWI76_RS21195 0.56 +0.4
4,437,539 - BWI76_RS21195 0.57 -1.7
4,437,577 + BWI76_RS21195 0.60 -0.1
4,437,779 + BWI76_RS21195 0.78 +1.2

Or see this region's nucleotide sequence