Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_907

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_905 and Pf1N1B4_906 overlap by 1 nucleotidesPf1N1B4_906 and Pf1N1B4_907 are separated by 123 nucleotidesPf1N1B4_907 and Pf1N1B4_908 are separated by 88 nucleotidesPf1N1B4_908 and Pf1N1B4_909 are separated by 39 nucleotides Pf1N1B4_905 - Nucleoid-associated protein, at 1,032,776 to 1,033,780 _905 Pf1N1B4_906 - Glutaredoxin NrdH, at 1,033,780 to 1,034,130 _906 Pf1N1B4_907 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 1,034,254 to 1,035,189 _907 Pf1N1B4_908 - FIG00955494: hypothetical protein, at 1,035,278 to 1,035,598 _908 Pf1N1B4_909 - Ketosteroid isomerase-related protein, at 1,035,638 to 1,036,108 _909 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -2 -1 0 1 2at 1033.280 kb on + strand, within Pf1N1B4_905at 1033.280 kb on + strand, within Pf1N1B4_905at 1033.280 kb on + strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.281 kb on - strand, within Pf1N1B4_905at 1033.325 kb on + strand, within Pf1N1B4_905at 1033.469 kb on + strand, within Pf1N1B4_905at 1033.557 kb on - strand, within Pf1N1B4_905at 1033.580 kb on + strand, within Pf1N1B4_905at 1033.581 kb on - strand, within Pf1N1B4_905at 1033.663 kb on + strand, within Pf1N1B4_905at 1033.663 kb on + strand, within Pf1N1B4_905at 1033.664 kb on - strand, within Pf1N1B4_905at 1033.664 kb on - strand, within Pf1N1B4_905at 1033.664 kb on - strand, within Pf1N1B4_905at 1033.664 kb on - strand, within Pf1N1B4_905at 1033.793 kb on + strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.794 kb on - strandat 1033.942 kb on + strand, within Pf1N1B4_906at 1033.987 kb on + strand, within Pf1N1B4_906at 1033.987 kb on + strand, within Pf1N1B4_906at 1033.987 kb on + strand, within Pf1N1B4_906at 1033.988 kb on - strand, within Pf1N1B4_906at 1034.032 kb on + strand, within Pf1N1B4_906at 1034.032 kb on + strand, within Pf1N1B4_906at 1034.032 kb on + strand, within Pf1N1B4_906at 1034.033 kb on - strand, within Pf1N1B4_906at 1034.088 kb on - strand, within Pf1N1B4_906at 1034.128 kb on + strandat 1034.136 kb on - strandat 1034.168 kb on + strandat 1034.169 kb on - strandat 1034.193 kb on - strandat 1034.563 kb on + strand, within Pf1N1B4_907at 1034.564 kb on - strand, within Pf1N1B4_907at 1034.564 kb on - strand, within Pf1N1B4_907at 1034.713 kb on - strand, within Pf1N1B4_907at 1034.757 kb on + strand, within Pf1N1B4_907at 1034.758 kb on - strand, within Pf1N1B4_907at 1035.002 kb on + strand, within Pf1N1B4_907at 1035.003 kb on - strand, within Pf1N1B4_907at 1035.003 kb on - strand, within Pf1N1B4_907at 1035.003 kb on - strand, within Pf1N1B4_907at 1035.003 kb on - strand, within Pf1N1B4_907at 1035.006 kb on + strand, within Pf1N1B4_907at 1035.006 kb on + strand, within Pf1N1B4_907at 1035.006 kb on + strand, within Pf1N1B4_907at 1035.007 kb on - strand, within Pf1N1B4_907at 1035.007 kb on - strand, within Pf1N1B4_907at 1035.007 kb on - strand, within Pf1N1B4_907at 1035.007 kb on - strand, within Pf1N1B4_907at 1035.007 kb on - strand, within Pf1N1B4_907at 1035.226 kb on + strandat 1035.272 kb on + strandat 1035.287 kb on + strandat 1035.287 kb on + strandat 1035.397 kb on - strand, within Pf1N1B4_908at 1035.526 kb on - strand, within Pf1N1B4_908at 1035.616 kb on + strandat 1035.617 kb on - strandat 1035.861 kb on + strand, within Pf1N1B4_909at 1035.861 kb on + strand, within Pf1N1B4_909at 1035.861 kb on + strand, within Pf1N1B4_909at 1035.862 kb on - strand, within Pf1N1B4_909at 1035.862 kb on - strand, within Pf1N1B4_909at 1035.862 kb on - strand, within Pf1N1B4_909at 1035.862 kb on - strand, within Pf1N1B4_909at 1035.862 kb on - strand, within Pf1N1B4_909at 1036.072 kb on - strandat 1036.072 kb on - strandat 1036.072 kb on - strandat 1036.143 kb on + strandat 1036.143 kb on + strandat 1036.143 kb on + strandat 1036.144 kb on - strandat 1036.144 kb on - strandat 1036.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,033,280 + Pf1N1B4_905 0.50 +0.2
1,033,280 + Pf1N1B4_905 0.50 -0.6
1,033,280 + Pf1N1B4_905 0.50 +0.1
1,033,281 - Pf1N1B4_905 0.50 +0.9
1,033,281 - Pf1N1B4_905 0.50 -0.7
1,033,281 - Pf1N1B4_905 0.50 -0.7
1,033,281 - Pf1N1B4_905 0.50 -0.1
1,033,281 - Pf1N1B4_905 0.50 -0.0
1,033,281 - Pf1N1B4_905 0.50 -0.4
1,033,281 - Pf1N1B4_905 0.50 +0.5
1,033,281 - Pf1N1B4_905 0.50 -0.9
1,033,281 - Pf1N1B4_905 0.50 -0.6
1,033,281 - Pf1N1B4_905 0.50 -0.4
1,033,281 - Pf1N1B4_905 0.50 -0.7
1,033,325 + Pf1N1B4_905 0.55 +0.5
1,033,469 + Pf1N1B4_905 0.69 +0.5
1,033,557 - Pf1N1B4_905 0.78 +0.6
1,033,580 + Pf1N1B4_905 0.80 -1.6
1,033,581 - Pf1N1B4_905 0.80 +0.1
1,033,663 + Pf1N1B4_905 0.88 +2.1
1,033,663 + Pf1N1B4_905 0.88 +1.4
1,033,664 - Pf1N1B4_905 0.88 -1.5
1,033,664 - Pf1N1B4_905 0.88 -0.0
1,033,664 - Pf1N1B4_905 0.88 +0.2
1,033,664 - Pf1N1B4_905 0.88 -0.1
1,033,793 + +0.6
1,033,794 - -0.3
1,033,794 - -0.4
1,033,794 - +0.4
1,033,794 - +0.2
1,033,794 - -0.3
1,033,794 - -0.8
1,033,794 - -0.2
1,033,794 - -0.3
1,033,942 + Pf1N1B4_906 0.46 -0.5
1,033,987 + Pf1N1B4_906 0.59 +0.1
1,033,987 + Pf1N1B4_906 0.59 +0.1
1,033,987 + Pf1N1B4_906 0.59 -2.3
1,033,988 - Pf1N1B4_906 0.59 +1.4
1,034,032 + Pf1N1B4_906 0.72 +0.4
1,034,032 + Pf1N1B4_906 0.72 -0.2
1,034,032 + Pf1N1B4_906 0.72 -0.1
1,034,033 - Pf1N1B4_906 0.72 -0.4
1,034,088 - Pf1N1B4_906 0.88 -0.1
1,034,128 + +0.2
1,034,136 - -0.2
1,034,168 + -1.6
1,034,169 - +1.5
1,034,193 - -0.9
1,034,563 + Pf1N1B4_907 0.33 +0.3
1,034,564 - Pf1N1B4_907 0.33 +0.5
1,034,564 - Pf1N1B4_907 0.33 +1.1
1,034,713 - Pf1N1B4_907 0.49 -0.2
1,034,757 + Pf1N1B4_907 0.54 -1.1
1,034,758 - Pf1N1B4_907 0.54 +0.1
1,035,002 + Pf1N1B4_907 0.80 -0.0
1,035,003 - Pf1N1B4_907 0.80 -0.6
1,035,003 - Pf1N1B4_907 0.80 -0.0
1,035,003 - Pf1N1B4_907 0.80 +0.4
1,035,003 - Pf1N1B4_907 0.80 -0.7
1,035,006 + Pf1N1B4_907 0.80 +0.3
1,035,006 + Pf1N1B4_907 0.80 -1.4
1,035,006 + Pf1N1B4_907 0.80 +0.1
1,035,007 - Pf1N1B4_907 0.80 +0.7
1,035,007 - Pf1N1B4_907 0.80 +0.7
1,035,007 - Pf1N1B4_907 0.80 -0.3
1,035,007 - Pf1N1B4_907 0.80 +0.6
1,035,007 - Pf1N1B4_907 0.80 -1.1
1,035,226 + +0.5
1,035,272 + -0.7
1,035,287 + -1.8
1,035,287 + -0.0
1,035,397 - Pf1N1B4_908 0.37 -0.6
1,035,526 - Pf1N1B4_908 0.77 -0.4
1,035,616 + +0.1
1,035,617 - +1.2
1,035,861 + Pf1N1B4_909 0.47 -0.6
1,035,861 + Pf1N1B4_909 0.47 -0.9
1,035,861 + Pf1N1B4_909 0.47 -0.9
1,035,862 - Pf1N1B4_909 0.48 -0.6
1,035,862 - Pf1N1B4_909 0.48 +0.9
1,035,862 - Pf1N1B4_909 0.48 +0.8
1,035,862 - Pf1N1B4_909 0.48 +0.2
1,035,862 - Pf1N1B4_909 0.48 +1.4
1,036,072 - +0.9
1,036,072 - +0.8
1,036,072 - +0.2
1,036,143 + -0.9
1,036,143 + -0.9
1,036,143 + -0.2
1,036,144 - -0.4
1,036,144 - -0.5
1,036,144 - -0.5

Or see this region's nucleotide sequence