Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_801 and Pf1N1B4_802 are separated by 655 nucleotides Pf1N1B4_802 and Pf1N1B4_803 are separated by 2 nucleotides
Pf1N1B4_801 - D-serine/D-alanine/glycine transporter, at 913,999 to 915,420
_801
Pf1N1B4_802 - Membrane carboxypeptidase (penicillin-binding protein), at 916,076 to 916,807
_802
Pf1N1B4_803 - Membrane carboxypeptidase (penicillin-binding protein), at 916,810 to 919,224
_803
Position (kb)
916
917 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 915.104 kb on + strand, within Pf1N1B4_801 at 915.104 kb on + strand, within Pf1N1B4_801 at 915.104 kb on + strand, within Pf1N1B4_801 at 915.105 kb on - strand, within Pf1N1B4_801 at 915.105 kb on - strand, within Pf1N1B4_801 at 915.143 kb on + strand, within Pf1N1B4_801 at 915.143 kb on + strand, within Pf1N1B4_801 at 915.143 kb on + strand, within Pf1N1B4_801 at 915.143 kb on + strand, within Pf1N1B4_801 at 915.144 kb on - strand, within Pf1N1B4_801 at 915.144 kb on - strand, within Pf1N1B4_801 at 915.214 kb on - strand, within Pf1N1B4_801 at 915.245 kb on + strand, within Pf1N1B4_801 at 915.246 kb on - strand, within Pf1N1B4_801 at 915.342 kb on + strand at 915.366 kb on + strand at 915.427 kb on - strand at 915.565 kb on + strand at 915.566 kb on - strand at 915.566 kb on - strand at 915.566 kb on - strand at 915.661 kb on + strand at 915.672 kb on - strand at 915.672 kb on - strand at 915.697 kb on - strand at 915.729 kb on - strand at 915.729 kb on - strand at 915.729 kb on - strand at 915.729 kb on - strand at 915.755 kb on - strand at 915.755 kb on - strand at 915.761 kb on - strand at 915.772 kb on + strand at 915.772 kb on + strand at 915.773 kb on - strand at 915.985 kb on + strand at 916.028 kb on + strand at 916.029 kb on - strand at 916.105 kb on + strand at 916.147 kb on - strand at 916.283 kb on + strand, within Pf1N1B4_802 at 916.419 kb on - strand, within Pf1N1B4_802 at 916.419 kb on - strand, within Pf1N1B4_802 at 916.422 kb on + strand, within Pf1N1B4_802 at 916.422 kb on + strand, within Pf1N1B4_802 at 916.422 kb on + strand, within Pf1N1B4_802 at 916.422 kb on + strand, within Pf1N1B4_802 at 916.422 kb on + strand, within Pf1N1B4_802 at 916.423 kb on - strand, within Pf1N1B4_802 at 916.423 kb on - strand, within Pf1N1B4_802 at 916.464 kb on - strand, within Pf1N1B4_802 at 916.491 kb on - strand, within Pf1N1B4_802 at 916.548 kb on - strand, within Pf1N1B4_802 at 916.548 kb on - strand, within Pf1N1B4_802 at 916.560 kb on - strand, within Pf1N1B4_802 at 916.574 kb on - strand at 916.574 kb on - strand, within Pf1N1B4_802 at 916.624 kb on - strand, within Pf1N1B4_802 at 916.783 kb on + strand at 916.861 kb on + strand at 917.122 kb on + strand, within Pf1N1B4_803 at 917.289 kb on + strand, within Pf1N1B4_803 at 917.290 kb on - strand, within Pf1N1B4_803 at 917.344 kb on + strand, within Pf1N1B4_803 at 917.344 kb on + strand, within Pf1N1B4_803 at 917.345 kb on - strand, within Pf1N1B4_803 at 917.345 kb on - strand, within Pf1N1B4_803 at 917.345 kb on - strand, within Pf1N1B4_803 at 917.416 kb on + strand, within Pf1N1B4_803 at 917.416 kb on + strand, within Pf1N1B4_803 at 917.443 kb on + strand, within Pf1N1B4_803 at 917.444 kb on - strand, within Pf1N1B4_803 at 917.444 kb on - strand, within Pf1N1B4_803 at 917.444 kb on - strand, within Pf1N1B4_803 at 917.444 kb on - strand at 917.510 kb on - strand at 917.510 kb on - strand, within Pf1N1B4_803 at 917.511 kb on + strand, within Pf1N1B4_803 at 917.511 kb on + strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.512 kb on - strand, within Pf1N1B4_803 at 917.650 kb on + strand, within Pf1N1B4_803 at 917.650 kb on + strand, within Pf1N1B4_803 at 917.650 kb on + strand, within Pf1N1B4_803 at 917.651 kb on - strand, within Pf1N1B4_803 at 917.651 kb on - strand, within Pf1N1B4_803 at 917.651 kb on - strand, within Pf1N1B4_803 at 917.651 kb on - strand, within Pf1N1B4_803 at 917.761 kb on + strand, within Pf1N1B4_803 at 917.761 kb on + strand at 917.761 kb on + strand, within Pf1N1B4_803 at 917.762 kb on - strand, within Pf1N1B4_803 at 917.762 kb on - strand, within Pf1N1B4_803 at 917.762 kb on - strand, within Pf1N1B4_803 at 917.762 kb on - strand, within Pf1N1B4_803
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 915,104 + Pf1N1B4_801 0.78 +0.1 915,104 + Pf1N1B4_801 0.78 +1.4 915,104 + Pf1N1B4_801 0.78 +0.3 915,105 - Pf1N1B4_801 0.78 +0.4 915,105 - Pf1N1B4_801 0.78 +1.2 915,143 + Pf1N1B4_801 0.80 +0.4 915,143 + Pf1N1B4_801 0.80 +0.1 915,143 + Pf1N1B4_801 0.80 +0.9 915,143 + Pf1N1B4_801 0.80 +0.8 915,144 - Pf1N1B4_801 0.81 +0.2 915,144 - Pf1N1B4_801 0.81 -0.4 915,214 - Pf1N1B4_801 0.85 +0.9 915,245 + Pf1N1B4_801 0.88 -0.1 915,246 - Pf1N1B4_801 0.88 +2.4 915,342 + +0.6 915,366 + +1.1 915,427 - +0.5 915,565 + +0.3 915,566 - -1.7 915,566 - -1.7 915,566 - -1.9 915,661 + +1.1 915,672 - -4.6 915,672 - -3.2 915,697 - -1.9 915,729 - -2.4 915,729 - -1.5 915,729 - -2.9 915,729 - -1.1 915,755 - -0.9 915,755 - -1.3 915,761 - +1.1 915,772 + +1.1 915,772 + +0.7 915,773 - -2.5 915,985 + -0.4 916,028 + -0.2 916,029 - -1.5 916,105 + +1.1 916,147 - -1.5 916,283 + Pf1N1B4_802 0.28 -0.5 916,419 - Pf1N1B4_802 0.47 -1.9 916,419 - Pf1N1B4_802 0.47 -2.8 916,422 + Pf1N1B4_802 0.47 +0.1 916,422 + Pf1N1B4_802 0.47 +0.2 916,422 + Pf1N1B4_802 0.47 +1.3 916,422 + Pf1N1B4_802 0.47 -0.9 916,422 + Pf1N1B4_802 0.47 -0.3 916,423 - Pf1N1B4_802 0.47 -0.9 916,423 - Pf1N1B4_802 0.47 -2.3 916,464 - Pf1N1B4_802 0.53 -1.9 916,491 - Pf1N1B4_802 0.57 -2.4 916,548 - Pf1N1B4_802 0.64 -0.2 916,548 - Pf1N1B4_802 0.64 -1.3 916,560 - Pf1N1B4_802 0.66 -2.3 916,574 - +0.1 916,574 - Pf1N1B4_802 0.68 -2.5 916,624 - Pf1N1B4_802 0.75 -0.5 916,783 + +1.1 916,861 + +0.1 917,122 + Pf1N1B4_803 0.13 -0.4 917,289 + Pf1N1B4_803 0.20 -0.2 917,290 - Pf1N1B4_803 0.20 -0.8 917,344 + Pf1N1B4_803 0.22 -0.7 917,344 + Pf1N1B4_803 0.22 -0.2 917,345 - Pf1N1B4_803 0.22 -0.5 917,345 - Pf1N1B4_803 0.22 +0.5 917,345 - Pf1N1B4_803 0.22 +1.8 917,416 + Pf1N1B4_803 0.25 -2.1 917,416 + Pf1N1B4_803 0.25 +1.4 917,443 + Pf1N1B4_803 0.26 +0.1 917,444 - Pf1N1B4_803 0.26 -0.5 917,444 - Pf1N1B4_803 0.26 -0.4 917,444 - Pf1N1B4_803 0.26 -2.3 917,444 - -0.3 917,510 - -0.3 917,510 - Pf1N1B4_803 0.29 -1.1 917,511 + Pf1N1B4_803 0.29 +0.1 917,511 + Pf1N1B4_803 0.29 -0.1 917,512 - Pf1N1B4_803 0.29 -0.1 917,512 - Pf1N1B4_803 0.29 +0.6 917,512 - Pf1N1B4_803 0.29 +1.2 917,512 - Pf1N1B4_803 0.29 -2.5 917,512 - Pf1N1B4_803 0.29 -0.1 917,512 - Pf1N1B4_803 0.29 -0.3 917,650 + Pf1N1B4_803 0.35 -0.2 917,650 + Pf1N1B4_803 0.35 +0.3 917,650 + Pf1N1B4_803 0.35 +0.5 917,651 - Pf1N1B4_803 0.35 +1.1 917,651 - Pf1N1B4_803 0.35 -0.4 917,651 - Pf1N1B4_803 0.35 +0.5 917,651 - Pf1N1B4_803 0.35 -0.8 917,761 + Pf1N1B4_803 0.39 +1.1 917,761 + -1.3 917,761 + Pf1N1B4_803 0.39 -0.4 917,762 - Pf1N1B4_803 0.39 -2.4 917,762 - Pf1N1B4_803 0.39 -0.0 917,762 - Pf1N1B4_803 0.39 +0.1 917,762 - Pf1N1B4_803 0.39 -0.1
Or see this region's nucleotide sequence