Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_802

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_801 and Pf1N1B4_802 are separated by 655 nucleotidesPf1N1B4_802 and Pf1N1B4_803 are separated by 2 nucleotides Pf1N1B4_801 - D-serine/D-alanine/glycine transporter, at 913,999 to 915,420 _801 Pf1N1B4_802 - Membrane carboxypeptidase (penicillin-binding protein), at 916,076 to 916,807 _802 Pf1N1B4_803 - Membrane carboxypeptidase (penicillin-binding protein), at 916,810 to 919,224 _803 Position (kb) 916 917Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 915.104 kb on + strand, within Pf1N1B4_801at 915.104 kb on + strand, within Pf1N1B4_801at 915.104 kb on + strand, within Pf1N1B4_801at 915.105 kb on - strand, within Pf1N1B4_801at 915.105 kb on - strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.144 kb on - strand, within Pf1N1B4_801at 915.144 kb on - strand, within Pf1N1B4_801at 915.214 kb on - strand, within Pf1N1B4_801at 915.245 kb on + strand, within Pf1N1B4_801at 915.246 kb on - strand, within Pf1N1B4_801at 915.342 kb on + strandat 915.366 kb on + strandat 915.427 kb on - strandat 915.565 kb on + strandat 915.566 kb on - strandat 915.566 kb on - strandat 915.566 kb on - strandat 915.661 kb on + strandat 915.672 kb on - strandat 915.672 kb on - strandat 915.697 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.755 kb on - strandat 915.755 kb on - strandat 915.761 kb on - strandat 915.772 kb on + strandat 915.772 kb on + strandat 915.773 kb on - strandat 915.985 kb on + strandat 916.028 kb on + strandat 916.029 kb on - strandat 916.105 kb on + strandat 916.147 kb on - strandat 916.283 kb on + strand, within Pf1N1B4_802at 916.419 kb on - strand, within Pf1N1B4_802at 916.419 kb on - strand, within Pf1N1B4_802at 916.422 kb on + strand, within Pf1N1B4_802at 916.422 kb on + strand, within Pf1N1B4_802at 916.422 kb on + strand, within Pf1N1B4_802at 916.422 kb on + strand, within Pf1N1B4_802at 916.422 kb on + strand, within Pf1N1B4_802at 916.423 kb on - strand, within Pf1N1B4_802at 916.423 kb on - strand, within Pf1N1B4_802at 916.464 kb on - strand, within Pf1N1B4_802at 916.491 kb on - strand, within Pf1N1B4_802at 916.548 kb on - strand, within Pf1N1B4_802at 916.548 kb on - strand, within Pf1N1B4_802at 916.560 kb on - strand, within Pf1N1B4_802at 916.574 kb on - strandat 916.574 kb on - strand, within Pf1N1B4_802at 916.624 kb on - strand, within Pf1N1B4_802at 916.783 kb on + strandat 916.861 kb on + strandat 917.122 kb on + strand, within Pf1N1B4_803at 917.289 kb on + strand, within Pf1N1B4_803at 917.290 kb on - strand, within Pf1N1B4_803at 917.344 kb on + strand, within Pf1N1B4_803at 917.344 kb on + strand, within Pf1N1B4_803at 917.345 kb on - strand, within Pf1N1B4_803at 917.345 kb on - strand, within Pf1N1B4_803at 917.345 kb on - strand, within Pf1N1B4_803at 917.416 kb on + strand, within Pf1N1B4_803at 917.416 kb on + strand, within Pf1N1B4_803at 917.443 kb on + strand, within Pf1N1B4_803at 917.444 kb on - strand, within Pf1N1B4_803at 917.444 kb on - strand, within Pf1N1B4_803at 917.444 kb on - strand, within Pf1N1B4_803at 917.444 kb on - strandat 917.510 kb on - strandat 917.510 kb on - strand, within Pf1N1B4_803at 917.511 kb on + strand, within Pf1N1B4_803at 917.511 kb on + strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.512 kb on - strand, within Pf1N1B4_803at 917.650 kb on + strand, within Pf1N1B4_803at 917.650 kb on + strand, within Pf1N1B4_803at 917.650 kb on + strand, within Pf1N1B4_803at 917.651 kb on - strand, within Pf1N1B4_803at 917.651 kb on - strand, within Pf1N1B4_803at 917.651 kb on - strand, within Pf1N1B4_803at 917.651 kb on - strand, within Pf1N1B4_803at 917.761 kb on + strand, within Pf1N1B4_803at 917.761 kb on + strandat 917.761 kb on + strand, within Pf1N1B4_803at 917.762 kb on - strand, within Pf1N1B4_803at 917.762 kb on - strand, within Pf1N1B4_803at 917.762 kb on - strand, within Pf1N1B4_803at 917.762 kb on - strand, within Pf1N1B4_803

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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915,104 + Pf1N1B4_801 0.78 +0.1
915,104 + Pf1N1B4_801 0.78 +1.4
915,104 + Pf1N1B4_801 0.78 +0.3
915,105 - Pf1N1B4_801 0.78 +0.4
915,105 - Pf1N1B4_801 0.78 +1.2
915,143 + Pf1N1B4_801 0.80 +0.4
915,143 + Pf1N1B4_801 0.80 +0.1
915,143 + Pf1N1B4_801 0.80 +0.9
915,143 + Pf1N1B4_801 0.80 +0.8
915,144 - Pf1N1B4_801 0.81 +0.2
915,144 - Pf1N1B4_801 0.81 -0.4
915,214 - Pf1N1B4_801 0.85 +0.9
915,245 + Pf1N1B4_801 0.88 -0.1
915,246 - Pf1N1B4_801 0.88 +2.4
915,342 + +0.6
915,366 + +1.1
915,427 - +0.5
915,565 + +0.3
915,566 - -1.7
915,566 - -1.7
915,566 - -1.9
915,661 + +1.1
915,672 - -4.6
915,672 - -3.2
915,697 - -1.9
915,729 - -2.4
915,729 - -1.5
915,729 - -2.9
915,729 - -1.1
915,755 - -0.9
915,755 - -1.3
915,761 - +1.1
915,772 + +1.1
915,772 + +0.7
915,773 - -2.5
915,985 + -0.4
916,028 + -0.2
916,029 - -1.5
916,105 + +1.1
916,147 - -1.5
916,283 + Pf1N1B4_802 0.28 -0.5
916,419 - Pf1N1B4_802 0.47 -1.9
916,419 - Pf1N1B4_802 0.47 -2.8
916,422 + Pf1N1B4_802 0.47 +0.1
916,422 + Pf1N1B4_802 0.47 +0.2
916,422 + Pf1N1B4_802 0.47 +1.3
916,422 + Pf1N1B4_802 0.47 -0.9
916,422 + Pf1N1B4_802 0.47 -0.3
916,423 - Pf1N1B4_802 0.47 -0.9
916,423 - Pf1N1B4_802 0.47 -2.3
916,464 - Pf1N1B4_802 0.53 -1.9
916,491 - Pf1N1B4_802 0.57 -2.4
916,548 - Pf1N1B4_802 0.64 -0.2
916,548 - Pf1N1B4_802 0.64 -1.3
916,560 - Pf1N1B4_802 0.66 -2.3
916,574 - +0.1
916,574 - Pf1N1B4_802 0.68 -2.5
916,624 - Pf1N1B4_802 0.75 -0.5
916,783 + +1.1
916,861 + +0.1
917,122 + Pf1N1B4_803 0.13 -0.4
917,289 + Pf1N1B4_803 0.20 -0.2
917,290 - Pf1N1B4_803 0.20 -0.8
917,344 + Pf1N1B4_803 0.22 -0.7
917,344 + Pf1N1B4_803 0.22 -0.2
917,345 - Pf1N1B4_803 0.22 -0.5
917,345 - Pf1N1B4_803 0.22 +0.5
917,345 - Pf1N1B4_803 0.22 +1.8
917,416 + Pf1N1B4_803 0.25 -2.1
917,416 + Pf1N1B4_803 0.25 +1.4
917,443 + Pf1N1B4_803 0.26 +0.1
917,444 - Pf1N1B4_803 0.26 -0.5
917,444 - Pf1N1B4_803 0.26 -0.4
917,444 - Pf1N1B4_803 0.26 -2.3
917,444 - -0.3
917,510 - -0.3
917,510 - Pf1N1B4_803 0.29 -1.1
917,511 + Pf1N1B4_803 0.29 +0.1
917,511 + Pf1N1B4_803 0.29 -0.1
917,512 - Pf1N1B4_803 0.29 -0.1
917,512 - Pf1N1B4_803 0.29 +0.6
917,512 - Pf1N1B4_803 0.29 +1.2
917,512 - Pf1N1B4_803 0.29 -2.5
917,512 - Pf1N1B4_803 0.29 -0.1
917,512 - Pf1N1B4_803 0.29 -0.3
917,650 + Pf1N1B4_803 0.35 -0.2
917,650 + Pf1N1B4_803 0.35 +0.3
917,650 + Pf1N1B4_803 0.35 +0.5
917,651 - Pf1N1B4_803 0.35 +1.1
917,651 - Pf1N1B4_803 0.35 -0.4
917,651 - Pf1N1B4_803 0.35 +0.5
917,651 - Pf1N1B4_803 0.35 -0.8
917,761 + Pf1N1B4_803 0.39 +1.1
917,761 + -1.3
917,761 + Pf1N1B4_803 0.39 -0.4
917,762 - Pf1N1B4_803 0.39 -2.4
917,762 - Pf1N1B4_803 0.39 -0.0
917,762 - Pf1N1B4_803 0.39 +0.1
917,762 - Pf1N1B4_803 0.39 -0.1

Or see this region's nucleotide sequence