Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_655

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_654 and Pf1N1B4_655 overlap by 4 nucleotidesPf1N1B4_655 and Pf1N1B4_656 are separated by 164 nucleotides Pf1N1B4_654 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein, at 748,397 to 749,341 _654 Pf1N1B4_655 - Glutathione S-transferase (EC 2.5.1.18), at 749,338 to 749,970 _655 Pf1N1B4_656 - Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1), at 750,135 to 751,352 _656 Position (kb) 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 748.508 kb on - strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.939 kb on + strand, within Pf1N1B4_654at 748.947 kb on + strand, within Pf1N1B4_654at 748.947 kb on + strand, within Pf1N1B4_654at 748.948 kb on - strand, within Pf1N1B4_654at 749.005 kb on - strand, within Pf1N1B4_654at 749.324 kb on + strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.347 kb on + strandat 749.347 kb on + strandat 749.348 kb on - strandat 749.348 kb on - strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.397 kb on - strandat 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.437 kb on + strand, within Pf1N1B4_655at 749.437 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.459 kb on - strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.750 kb on + strand, within Pf1N1B4_655at 749.751 kb on - strand, within Pf1N1B4_655at 749.882 kb on + strand, within Pf1N1B4_655at 749.989 kb on - strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.145 kb on + strandat 750.166 kb on + strandat 750.166 kb on + strandat 750.167 kb on - strandat 750.167 kb on - strandat 750.167 kb on - strandat 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strandat 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.775 kb on + strand, within Pf1N1B4_656at 750.776 kb on - strand, within Pf1N1B4_656at 750.842 kb on + strand, within Pf1N1B4_656at 750.843 kb on - strand, within Pf1N1B4_656at 750.843 kb on - strand, within Pf1N1B4_656at 750.843 kb on - strand, within Pf1N1B4_656at 750.843 kb on - strand, within Pf1N1B4_656at 750.843 kb on - strand, within Pf1N1B4_656

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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748,508 - Pf1N1B4_654 0.12 -0.3
748,525 + Pf1N1B4_654 0.14 +0.2
748,525 + Pf1N1B4_654 0.14 +0.6
748,525 + Pf1N1B4_654 0.14 -0.2
748,526 - Pf1N1B4_654 0.14 -0.0
748,526 - Pf1N1B4_654 0.14 -0.3
748,526 - Pf1N1B4_654 0.14 -0.6
748,526 - Pf1N1B4_654 0.14 +0.4
748,698 + Pf1N1B4_654 0.32 +1.4
748,698 + Pf1N1B4_654 0.32 -0.1
748,698 + Pf1N1B4_654 0.32 -0.0
748,698 + Pf1N1B4_654 0.32 -0.0
748,698 + Pf1N1B4_654 0.32 -0.2
748,698 + Pf1N1B4_654 0.32 +0.4
748,698 + Pf1N1B4_654 0.32 +0.1
748,699 - Pf1N1B4_654 0.32 +0.7
748,699 - Pf1N1B4_654 0.32 -0.3
748,699 - Pf1N1B4_654 0.32 -0.6
748,939 + Pf1N1B4_654 0.57 -0.2
748,947 + Pf1N1B4_654 0.58 +1.0
748,947 + Pf1N1B4_654 0.58 +0.4
748,948 - Pf1N1B4_654 0.58 +0.2
749,005 - Pf1N1B4_654 0.64 -0.6
749,324 + -0.1
749,325 - -0.3
749,325 - +0.7
749,325 - +1.0
749,325 - +1.0
749,325 - +0.6
749,325 - +0.0
749,347 + -0.1
749,347 + +0.3
749,348 - -0.3
749,348 - +0.6
749,396 + -2.3
749,396 + +0.3
749,396 + +1.3
749,396 + -0.9
749,396 + -0.2
749,396 + +0.6
749,397 - -1.3
749,411 + Pf1N1B4_655 0.12 -0.6
749,411 + Pf1N1B4_655 0.12 -0.5
749,411 + Pf1N1B4_655 0.12 -2.0
749,411 + Pf1N1B4_655 0.12 +0.2
749,412 - Pf1N1B4_655 0.12 +0.3
749,412 - Pf1N1B4_655 0.12 -1.1
749,412 - Pf1N1B4_655 0.12 +0.4
749,412 - Pf1N1B4_655 0.12 -0.2
749,412 - Pf1N1B4_655 0.12 -0.6
749,437 + Pf1N1B4_655 0.16 +0.7
749,437 + Pf1N1B4_655 0.16 +0.6
749,444 + Pf1N1B4_655 0.17 +0.6
749,444 + Pf1N1B4_655 0.17 -0.2
749,444 + Pf1N1B4_655 0.17 +0.0
749,444 + Pf1N1B4_655 0.17 -0.4
749,445 - Pf1N1B4_655 0.17 +0.1
749,445 - Pf1N1B4_655 0.17 -0.6
749,445 - Pf1N1B4_655 0.17 +0.0
749,445 - Pf1N1B4_655 0.17 +1.2
749,445 - Pf1N1B4_655 0.17 +0.4
749,459 - Pf1N1B4_655 0.19 +0.4
749,634 + Pf1N1B4_655 0.47 +0.5
749,634 + Pf1N1B4_655 0.47 -1.1
749,634 + Pf1N1B4_655 0.47 +1.2
749,635 - Pf1N1B4_655 0.47 +0.9
749,635 - Pf1N1B4_655 0.47 +0.1
749,635 - Pf1N1B4_655 0.47 -0.8
749,635 - Pf1N1B4_655 0.47 -0.1
749,635 - Pf1N1B4_655 0.47 -1.3
749,750 + Pf1N1B4_655 0.65 -0.1
749,751 - Pf1N1B4_655 0.65 +2.2
749,882 + Pf1N1B4_655 0.86 +0.6
749,989 - -1.0
750,136 + -0.6
750,136 + +0.5
750,136 + -0.2
750,136 + +1.0
750,136 + +0.0
750,137 - -0.6
750,137 - -0.3
750,137 - +1.0
750,137 - -1.3
750,137 - +0.7
750,140 + +0.5
750,140 + +0.7
750,140 + +0.6
750,140 + +0.5
750,140 + +0.4
750,140 + +0.5
750,140 + +0.3
750,140 + +0.8
750,140 + -0.3
750,140 + +0.7
750,140 + +1.0
750,140 + +2.0
750,140 + +0.2
750,140 + +0.0
750,140 + +1.0
750,141 - +1.4
750,141 - +0.2
750,141 - +0.1
750,141 - +0.6
750,141 - +0.9
750,141 - +0.0
750,141 - +0.2
750,141 - +0.6
750,141 - +0.4
750,141 - +0.3
750,141 - +0.6
750,141 - +1.2
750,141 - +0.4
750,141 - +0.7
750,141 - +1.1
750,145 + -0.2
750,166 + +0.6
750,166 + -0.2
750,167 - +0.2
750,167 - +0.4
750,167 - +0.3
750,280 + Pf1N1B4_656 0.12 -1.4
750,280 + Pf1N1B4_656 0.12 +0.2
750,280 + Pf1N1B4_656 0.12 -0.9
750,280 + Pf1N1B4_656 0.12 +0.0
750,280 + Pf1N1B4_656 0.12 -0.8
750,280 + Pf1N1B4_656 0.12 -0.1
750,281 - Pf1N1B4_656 0.12 -0.6
750,281 - Pf1N1B4_656 0.12 +0.4
750,281 - Pf1N1B4_656 0.12 -0.3
750,281 - Pf1N1B4_656 0.12 +0.0
750,281 - Pf1N1B4_656 0.12 -0.9
750,281 - Pf1N1B4_656 0.12 +0.2
750,281 - Pf1N1B4_656 0.12 -0.4
750,330 + Pf1N1B4_656 0.16 +0.0
750,330 + +0.0
750,330 + Pf1N1B4_656 0.16 -0.9
750,330 + Pf1N1B4_656 0.16 -0.0
750,330 + Pf1N1B4_656 0.16 +0.4
750,331 - Pf1N1B4_656 0.16 +0.0
750,331 - Pf1N1B4_656 0.16 +0.3
750,331 - Pf1N1B4_656 0.16 +1.7
750,331 - Pf1N1B4_656 0.16 -0.5
750,331 - Pf1N1B4_656 0.16 -0.3
750,775 + Pf1N1B4_656 0.53 +0.3
750,775 + Pf1N1B4_656 0.53 -0.2
750,775 + Pf1N1B4_656 0.53 -0.7
750,775 + Pf1N1B4_656 0.53 +0.3
750,775 + Pf1N1B4_656 0.53 -0.4
750,775 + Pf1N1B4_656 0.53 -0.1
750,776 - Pf1N1B4_656 0.53 -0.7
750,842 + Pf1N1B4_656 0.58 -0.4
750,843 - Pf1N1B4_656 0.58 -0.2
750,843 - Pf1N1B4_656 0.58 -1.2
750,843 - Pf1N1B4_656 0.58 -1.4
750,843 - Pf1N1B4_656 0.58 +0.0
750,843 - Pf1N1B4_656 0.58 +0.3

Or see this region's nucleotide sequence