Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_620

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_619 and Pf1N1B4_620 are separated by 457 nucleotidesPf1N1B4_620 and Pf1N1B4_621 are separated by 11 nucleotides Pf1N1B4_619 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 715,265 to 716,773 _619 Pf1N1B4_620 - Glycine cleavage system H protein, at 717,231 to 717,614 _620 Pf1N1B4_621 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 717,626 to 720,478 _621 Position (kb) 717 718Strain fitness (log2 ratio) -2 -1 0 1 2at 716.396 kb on + strand, within Pf1N1B4_619at 716.397 kb on - strand, within Pf1N1B4_619at 716.460 kb on - strandat 716.472 kb on + strand, within Pf1N1B4_619at 716.670 kb on - strandat 716.746 kb on + strandat 716.746 kb on + strandat 716.746 kb on + strandat 716.747 kb on - strandat 716.747 kb on - strandat 716.747 kb on - strandat 716.750 kb on + strandat 716.751 kb on - strandat 716.757 kb on + strandat 716.757 kb on + strandat 716.757 kb on + strandat 716.758 kb on - strandat 716.758 kb on - strandat 716.758 kb on - strandat 716.761 kb on + strandat 716.761 kb on + strandat 716.761 kb on + strandat 716.762 kb on - strandat 716.762 kb on - strandat 716.762 kb on - strandat 716.762 kb on - strandat 716.762 kb on - strandat 716.762 kb on - strandat 716.843 kb on - strandat 716.846 kb on + strandat 716.846 kb on + strandat 716.846 kb on + strandat 716.847 kb on - strandat 716.858 kb on + strandat 716.859 kb on - strandat 716.871 kb on + strandat 716.871 kb on + strandat 716.872 kb on - strandat 716.872 kb on - strandat 716.872 kb on - strandat 716.872 kb on - strandat 716.872 kb on - strandat 717.072 kb on - strandat 717.221 kb on - strandat 717.426 kb on + strand, within Pf1N1B4_620at 717.426 kb on + strand, within Pf1N1B4_620at 717.426 kb on + strand, within Pf1N1B4_620at 717.426 kb on + strand, within Pf1N1B4_620at 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strandat 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strand, within Pf1N1B4_620at 717.427 kb on - strandat 717.580 kb on - strandat 717.637 kb on + strandat 717.637 kb on + strandat 717.638 kb on - strandat 717.869 kb on + strandat 717.869 kb on + strandat 717.869 kb on + strandat 717.870 kb on - strandat 717.870 kb on - strandat 717.870 kb on - strandat 717.885 kb on - strandat 717.898 kb on + strandat 717.899 kb on - strandat 717.899 kb on - strandat 717.899 kb on - strandat 717.899 kb on - strandat 717.954 kb on - strand, within Pf1N1B4_621at 717.954 kb on - strand, within Pf1N1B4_621at 717.963 kb on - strand, within Pf1N1B4_621at 718.475 kb on + strandat 718.475 kb on + strand, within Pf1N1B4_621at 718.592 kb on - strand, within Pf1N1B4_621

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
716,396 + Pf1N1B4_619 0.75 -0.1
716,397 - Pf1N1B4_619 0.75 -1.6
716,460 - +2.0
716,472 + Pf1N1B4_619 0.80 -1.3
716,670 - +0.0
716,746 + -0.4
716,746 + +1.0
716,746 + -1.6
716,747 - -1.3
716,747 - -1.1
716,747 - -1.4
716,750 + -1.1
716,751 - -0.8
716,757 + +1.4
716,757 + -0.1
716,757 + +0.0
716,758 - -0.5
716,758 - -0.3
716,758 - -1.8
716,761 + +0.9
716,761 + -2.3
716,761 + +0.3
716,762 - -1.0
716,762 - +0.9
716,762 - -0.2
716,762 - +0.4
716,762 - -1.2
716,762 - -0.8
716,843 - +0.0
716,846 + +1.4
716,846 + -0.7
716,846 + +0.7
716,847 - -0.4
716,858 + +0.1
716,859 - -1.3
716,871 + -0.3
716,871 + -1.0
716,872 - +1.0
716,872 - -0.3
716,872 - -0.7
716,872 - +0.5
716,872 - +0.0
717,072 - -0.7
717,221 - -0.2
717,426 + Pf1N1B4_620 0.51 -0.4
717,426 + Pf1N1B4_620 0.51 -0.9
717,426 + Pf1N1B4_620 0.51 +1.5
717,426 + Pf1N1B4_620 0.51 -0.6
717,427 - Pf1N1B4_620 0.51 +1.0
717,427 - Pf1N1B4_620 0.51 -1.1
717,427 - Pf1N1B4_620 0.51 -1.0
717,427 - +1.8
717,427 - Pf1N1B4_620 0.51 -0.9
717,427 - Pf1N1B4_620 0.51 -0.1
717,427 - Pf1N1B4_620 0.51 -0.3
717,427 - +0.6
717,580 - -0.2
717,637 + +0.0
717,637 + -2.4
717,638 - -1.3
717,869 + -1.2
717,869 + +2.0
717,869 + -0.6
717,870 - +0.3
717,870 - -0.6
717,870 - -0.5
717,885 - -1.3
717,898 + -1.7
717,899 - -0.8
717,899 - -0.4
717,899 - -1.2
717,899 - -0.7
717,954 - Pf1N1B4_621 0.11 +0.0
717,954 - Pf1N1B4_621 0.11 -0.1
717,963 - Pf1N1B4_621 0.12 +0.7
718,475 + +1.0
718,475 + Pf1N1B4_621 0.30 -2.0
718,592 - Pf1N1B4_621 0.34 -0.8

Or see this region's nucleotide sequence