Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_555

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_553 and Pf1N1B4_554 are separated by 66 nucleotidesPf1N1B4_554 and Pf1N1B4_555 are separated by 137 nucleotidesPf1N1B4_555 and Pf1N1B4_556 are separated by 166 nucleotides Pf1N1B4_553 - Bacterial transcription activator, effector binding protein, at 650,298 to 650,786 _553 Pf1N1B4_554 - Putative threonine efflux protein, at 650,853 to 651,515 _554 Pf1N1B4_555 - Uncharacterized PLP-dependent aminotransferase YfdZ, at 651,653 to 652,870 _555 Pf1N1B4_556 - Gluconate permease, at 653,037 to 654,389 _556 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2at 650.827 kb on - strandat 650.827 kb on - strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.828 kb on + strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.829 kb on - strandat 650.855 kb on - strandat 650.855 kb on - strandat 650.855 kb on - strandat 650.900 kb on + strandat 650.900 kb on + strandat 650.901 kb on - strandat 650.901 kb on - strandat 650.933 kb on - strand, within Pf1N1B4_554at 650.966 kb on - strand, within Pf1N1B4_554at 651.254 kb on - strand, within Pf1N1B4_554at 651.254 kb on - strand, within Pf1N1B4_554at 651.275 kb on - strand, within Pf1N1B4_554at 651.275 kb on - strand, within Pf1N1B4_554at 651.275 kb on - strand, within Pf1N1B4_554at 651.337 kb on - strand, within Pf1N1B4_554at 651.337 kb on - strand, within Pf1N1B4_554at 651.418 kb on + strand, within Pf1N1B4_554at 651.419 kb on - strand, within Pf1N1B4_554at 651.507 kb on - strandat 651.543 kb on + strandat 651.544 kb on - strandat 651.544 kb on - strandat 651.544 kb on - strandat 651.547 kb on + strandat 651.547 kb on + strandat 651.547 kb on + strandat 651.548 kb on - strandat 651.548 kb on - strandat 651.548 kb on - strandat 651.578 kb on + strandat 651.578 kb on + strandat 651.579 kb on - strandat 651.634 kb on + strandat 651.634 kb on + strandat 651.634 kb on + strandat 651.634 kb on + strandat 651.634 kb on + strandat 651.635 kb on - strandat 651.635 kb on - strandat 651.635 kb on - strandat 651.635 kb on - strandat 651.690 kb on + strandat 651.691 kb on - strandat 651.691 kb on - strandat 651.691 kb on - strandat 651.860 kb on + strand, within Pf1N1B4_555at 651.860 kb on + strand, within Pf1N1B4_555at 651.911 kb on + strand, within Pf1N1B4_555at 651.923 kb on + strand, within Pf1N1B4_555at 652.061 kb on + strand, within Pf1N1B4_555at 652.061 kb on + strandat 652.061 kb on + strand, within Pf1N1B4_555at 652.062 kb on - strand, within Pf1N1B4_555at 652.062 kb on - strand, within Pf1N1B4_555at 652.062 kb on - strand, within Pf1N1B4_555at 652.259 kb on + strandat 652.388 kb on + strand, within Pf1N1B4_555at 652.388 kb on + strand, within Pf1N1B4_555at 652.389 kb on - strand, within Pf1N1B4_555at 652.466 kb on + strandat 652.466 kb on + strand, within Pf1N1B4_555at 652.466 kb on + strand, within Pf1N1B4_555at 652.466 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strandat 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.637 kb on + strand, within Pf1N1B4_555at 652.664 kb on + strand, within Pf1N1B4_555at 652.751 kb on + strandat 652.751 kb on + strandat 653.143 kb on + strandat 653.522 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.532 kb on - strand, within Pf1N1B4_556at 653.533 kb on + strand, within Pf1N1B4_556at 653.534 kb on - strandat 653.534 kb on - strand, within Pf1N1B4_556at 653.534 kb on - strand, within Pf1N1B4_556at 653.534 kb on - strand, within Pf1N1B4_556at 653.534 kb on - strand, within Pf1N1B4_556at 653.783 kb on + strand, within Pf1N1B4_556at 653.784 kb on - strand, within Pf1N1B4_556at 653.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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650,827 - +0.0
650,827 - -1.4
650,828 + +0.6
650,828 + -0.3
650,828 + -0.9
650,828 + +0.8
650,828 + +0.0
650,828 + -1.6
650,828 + -2.0
650,829 - +0.2
650,829 - -0.1
650,829 - +0.0
650,829 - -0.4
650,829 - +0.0
650,829 - +1.0
650,829 - -0.3
650,855 - -0.9
650,855 - +0.5
650,855 - +0.3
650,900 + +1.0
650,900 + -0.1
650,901 - +0.6
650,901 - -0.2
650,933 - Pf1N1B4_554 0.12 +0.3
650,966 - Pf1N1B4_554 0.17 -1.0
651,254 - Pf1N1B4_554 0.60 -0.2
651,254 - Pf1N1B4_554 0.60 +0.0
651,275 - Pf1N1B4_554 0.64 +1.5
651,275 - Pf1N1B4_554 0.64 +1.6
651,275 - Pf1N1B4_554 0.64 +0.3
651,337 - Pf1N1B4_554 0.73 -0.4
651,337 - Pf1N1B4_554 0.73 +0.2
651,418 + Pf1N1B4_554 0.85 +0.7
651,419 - Pf1N1B4_554 0.85 +0.3
651,507 - -0.2
651,543 + -2.3
651,544 - -0.4
651,544 - -0.2
651,544 - -0.9
651,547 + -0.6
651,547 + -0.2
651,547 + -1.0
651,548 - +0.6
651,548 - +0.3
651,548 - +0.5
651,578 + -0.1
651,578 + -0.6
651,579 - +2.7
651,634 + -0.6
651,634 + +0.5
651,634 + -1.0
651,634 + -1.4
651,634 + -1.0
651,635 - +0.7
651,635 - +1.0
651,635 - -2.3
651,635 - +0.0
651,690 + -0.6
651,691 - -1.0
651,691 - +1.0
651,691 - +1.0
651,860 + Pf1N1B4_555 0.17 -0.4
651,860 + Pf1N1B4_555 0.17 -0.9
651,911 + Pf1N1B4_555 0.21 -0.2
651,923 + Pf1N1B4_555 0.22 +0.0
652,061 + Pf1N1B4_555 0.33 +0.8
652,061 + +1.0
652,061 + Pf1N1B4_555 0.33 +0.2
652,062 - Pf1N1B4_555 0.34 +0.4
652,062 - Pf1N1B4_555 0.34 +0.3
652,062 - Pf1N1B4_555 0.34 -0.7
652,259 + +0.0
652,388 + Pf1N1B4_555 0.60 -0.1
652,388 + Pf1N1B4_555 0.60 +0.1
652,389 - Pf1N1B4_555 0.60 -1.2
652,466 + -0.6
652,466 + Pf1N1B4_555 0.67 +0.2
652,466 + Pf1N1B4_555 0.67 +0.3
652,466 + Pf1N1B4_555 0.67 -0.6
652,637 + +2.3
652,637 + Pf1N1B4_555 0.81 +0.6
652,637 + Pf1N1B4_555 0.81 +0.2
652,637 + Pf1N1B4_555 0.81 +0.3
652,637 + Pf1N1B4_555 0.81 +0.5
652,637 + Pf1N1B4_555 0.81 -0.3
652,637 + Pf1N1B4_555 0.81 +0.5
652,637 + Pf1N1B4_555 0.81 -0.4
652,637 + Pf1N1B4_555 0.81 +2.0
652,637 + Pf1N1B4_555 0.81 -0.3
652,637 + Pf1N1B4_555 0.81 +0.0
652,637 + Pf1N1B4_555 0.81 +0.1
652,664 + Pf1N1B4_555 0.83 -0.1
652,751 + -0.5
652,751 + -0.4
653,143 + -0.6
653,522 - Pf1N1B4_556 0.36 -0.4
653,532 - Pf1N1B4_556 0.37 -1.2
653,532 - Pf1N1B4_556 0.37 -1.7
653,532 - Pf1N1B4_556 0.37 +0.1
653,532 - Pf1N1B4_556 0.37 -0.9
653,532 - Pf1N1B4_556 0.37 -0.4
653,532 - Pf1N1B4_556 0.37 +0.1
653,533 + Pf1N1B4_556 0.37 -0.3
653,534 - -0.6
653,534 - Pf1N1B4_556 0.37 +0.7
653,534 - Pf1N1B4_556 0.37 -2.2
653,534 - Pf1N1B4_556 0.37 +1.6
653,534 - Pf1N1B4_556 0.37 -1.3
653,783 + Pf1N1B4_556 0.55 -0.6
653,784 - Pf1N1B4_556 0.55 -1.8
653,784 - -1.6

Or see this region's nucleotide sequence