Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4775

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4773 and Pf1N1B4_4774 are separated by 292 nucleotidesPf1N1B4_4774 and Pf1N1B4_4775 are separated by 4 nucleotidesPf1N1B4_4775 and Pf1N1B4_4776 are separated by 194 nucleotides Pf1N1B4_4773 - RND efflux system, membrane fusion protein CmeA, at 5,274,456 to 5,275,613 _4773 Pf1N1B4_4774 - Transcriptional regulatory protein RstA, at 5,275,906 to 5,276,607 _4774 Pf1N1B4_4775 - Sensory histidine kinase QseC, at 5,276,612 to 5,277,913 _4775 Pf1N1B4_4776 - Nicotinamidase (EC 3.5.1.19), at 5,278,108 to 5,278,746 _4776 Position (kb) 5276 5277 5278Strain fitness (log2 ratio) -2 -1 0 1 2at 5275.615 kb on + strandat 5275.616 kb on - strandat 5275.616 kb on - strandat 5275.616 kb on - strandat 5275.731 kb on + strandat 5275.731 kb on + strandat 5275.732 kb on - strandat 5275.732 kb on - strandat 5275.733 kb on + strandat 5275.768 kb on + strandat 5275.768 kb on + strandat 5275.812 kb on + strandat 5276.383 kb on + strand, within Pf1N1B4_4774at 5276.383 kb on + strand, within Pf1N1B4_4774at 5276.384 kb on - strand, within Pf1N1B4_4774at 5276.424 kb on - strand, within Pf1N1B4_4774at 5276.424 kb on - strand, within Pf1N1B4_4774at 5276.637 kb on - strandat 5276.672 kb on + strandat 5276.672 kb on + strandat 5276.673 kb on - strandat 5276.673 kb on - strandat 5276.723 kb on + strandat 5276.723 kb on + strandat 5276.723 kb on + strandat 5276.724 kb on - strandat 5276.724 kb on - strandat 5276.735 kb on + strandat 5277.026 kb on + strand, within Pf1N1B4_4775at 5277.422 kb on + strand, within Pf1N1B4_4775at 5277.546 kb on + strand, within Pf1N1B4_4775at 5277.546 kb on + strand, within Pf1N1B4_4775at 5277.943 kb on + strandat 5277.991 kb on - strandat 5277.991 kb on - strandat 5278.127 kb on - strandat 5278.307 kb on + strand, within Pf1N1B4_4776at 5278.307 kb on + strand, within Pf1N1B4_4776at 5278.308 kb on - strand, within Pf1N1B4_4776at 5278.308 kb on - strand, within Pf1N1B4_4776at 5278.308 kb on - strand, within Pf1N1B4_4776at 5278.308 kb on - strand, within Pf1N1B4_4776at 5278.388 kb on + strand, within Pf1N1B4_4776at 5278.477 kb on - strand, within Pf1N1B4_4776at 5278.539 kb on - strandat 5278.705 kb on + strandat 5278.705 kb on + strandat 5278.706 kb on - strandat 5278.706 kb on - strandat 5278.783 kb on - strandat 5278.783 kb on - strandat 5278.788 kb on + strandat 5278.788 kb on + strandat 5278.789 kb on - strandat 5278.899 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
5,275,615 + -1.1
5,275,616 - +0.5
5,275,616 - +0.4
5,275,616 - +0.6
5,275,731 + +0.2
5,275,731 + -0.7
5,275,732 - +0.1
5,275,732 - +0.6
5,275,733 + -1.0
5,275,768 + +1.3
5,275,768 + -0.4
5,275,812 + +0.4
5,276,383 + Pf1N1B4_4774 0.68 +0.1
5,276,383 + Pf1N1B4_4774 0.68 +0.3
5,276,384 - Pf1N1B4_4774 0.68 +0.4
5,276,424 - Pf1N1B4_4774 0.74 +0.2
5,276,424 - Pf1N1B4_4774 0.74 +0.3
5,276,637 - +1.1
5,276,672 + +0.6
5,276,672 + -1.8
5,276,673 - +1.9
5,276,673 - -0.2
5,276,723 + +0.2
5,276,723 + +0.1
5,276,723 + -1.6
5,276,724 - -0.4
5,276,724 - -0.2
5,276,735 + -0.2
5,277,026 + Pf1N1B4_4775 0.32 -1.3
5,277,422 + Pf1N1B4_4775 0.62 -0.4
5,277,546 + Pf1N1B4_4775 0.72 -0.9
5,277,546 + Pf1N1B4_4775 0.72 +0.7
5,277,943 + -0.0
5,277,991 - -0.8
5,277,991 - +0.1
5,278,127 - -0.2
5,278,307 + Pf1N1B4_4776 0.31 -0.4
5,278,307 + Pf1N1B4_4776 0.31 -0.2
5,278,308 - Pf1N1B4_4776 0.31 +0.1
5,278,308 - Pf1N1B4_4776 0.31 -0.7
5,278,308 - Pf1N1B4_4776 0.31 +0.1
5,278,308 - Pf1N1B4_4776 0.31 -0.4
5,278,388 + Pf1N1B4_4776 0.44 -0.8
5,278,477 - Pf1N1B4_4776 0.58 -0.7
5,278,539 - -0.6
5,278,705 + +0.1
5,278,705 + -0.6
5,278,706 - -1.4
5,278,706 - +1.0
5,278,783 - -1.2
5,278,783 - -0.9
5,278,788 + -0.4
5,278,788 + +0.1
5,278,789 - -1.7
5,278,899 + +0.7

Or see this region's nucleotide sequence