Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4731 and Pf1N1B4_4732 are separated by 126 nucleotides Pf1N1B4_4732 and Pf1N1B4_4733 are separated by 157 nucleotides Pf1N1B4_4733 and Pf1N1B4_4734 are separated by 32 nucleotides
Pf1N1B4_4731 - Sigma-54 dependent transcriptional regulator, at 5,228,373 to 5,229,698
_4731
Pf1N1B4_4732 - Fap amyloid fiber secretin, at 5,229,825 to 5,230,994
_4732
Pf1N1B4_4733 - Fap system putative outer membrane protein, at 5,231,152 to 5,231,889
_4733
Pf1N1B4_4734 - Fap protein with C39 domain, at 5,231,922 to 5,232,602
_4734
Position (kb) 5229
5230
5231 Strain fitness (log2 ratio) -2
-1
0
1 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.351 kb on + strand, within Pf1N1B4_4731 at 5229.352 kb on - strand, within Pf1N1B4_4731 at 5229.352 kb on - strand, within Pf1N1B4_4731 at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.599 kb on - strand at 5229.603 kb on - strand at 5229.644 kb on - strand at 5229.659 kb on + strand at 5229.666 kb on + strand at 5229.666 kb on + strand at 5229.666 kb on + strand at 5229.814 kb on + strand at 5229.815 kb on - strand at 5229.815 kb on - strand at 5229.832 kb on + strand at 5229.833 kb on - strand at 5229.833 kb on - strand at 5230.049 kb on + strand, within Pf1N1B4_4732 at 5230.177 kb on + strand at 5230.177 kb on + strand at 5230.177 kb on + strand, within Pf1N1B4_4732 at 5230.183 kb on + strand, within Pf1N1B4_4732 at 5230.184 kb on - strand at 5230.184 kb on - strand, within Pf1N1B4_4732 at 5230.411 kb on + strand, within Pf1N1B4_4732 at 5230.507 kb on + strand, within Pf1N1B4_4732 at 5230.507 kb on + strand at 5230.687 kb on + strand, within Pf1N1B4_4732 at 5230.688 kb on - strand, within Pf1N1B4_4732 at 5230.696 kb on + strand, within Pf1N1B4_4732 at 5230.696 kb on + strand, within Pf1N1B4_4732 at 5230.756 kb on + strand, within Pf1N1B4_4732 at 5230.947 kb on + strand at 5231.008 kb on - strand at 5231.038 kb on + strand at 5231.038 kb on + strand at 5231.038 kb on + strand at 5231.039 kb on - strand at 5231.039 kb on - strand at 5231.039 kb on - strand at 5231.078 kb on + strand at 5231.078 kb on + strand at 5231.127 kb on + strand at 5231.128 kb on - strand at 5231.148 kb on + strand at 5231.148 kb on + strand at 5231.148 kb on + strand at 5231.371 kb on - strand, within Pf1N1B4_4733 at 5231.504 kb on + strand at 5231.514 kb on + strand, within Pf1N1B4_4733 at 5231.643 kb on - strand, within Pf1N1B4_4733 at 5231.643 kb on - strand, within Pf1N1B4_4733 at 5231.643 kb on - strand, within Pf1N1B4_4733 at 5231.698 kb on + strand, within Pf1N1B4_4733 at 5231.698 kb on + strand, within Pf1N1B4_4733
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,229,259 - Pf1N1B4_4731 0.67 +0.6 5,229,259 - Pf1N1B4_4731 0.67 -0.7 5,229,259 - Pf1N1B4_4731 0.67 -0.7 5,229,259 - Pf1N1B4_4731 0.67 +0.4 5,229,351 + Pf1N1B4_4731 0.74 -0.5 5,229,352 - Pf1N1B4_4731 0.74 -0.4 5,229,352 - Pf1N1B4_4731 0.74 +0.6 5,229,598 + +0.1 5,229,598 + -0.7 5,229,598 + +0.1 5,229,598 + -0.8 5,229,599 - -0.9 5,229,603 - -0.4 5,229,644 - +0.1 5,229,659 + -0.3 5,229,666 + -0.4 5,229,666 + +0.0 5,229,666 + +0.1 5,229,814 + -0.3 5,229,815 - -0.7 5,229,815 - -0.4 5,229,832 + -1.2 5,229,833 - -2.0 5,229,833 - +0.9 5,230,049 + Pf1N1B4_4732 0.19 +0.3 5,230,177 + +0.3 5,230,177 + +1.0 5,230,177 + Pf1N1B4_4732 0.30 -1.5 5,230,183 + Pf1N1B4_4732 0.31 -0.7 5,230,184 - -0.4 5,230,184 - Pf1N1B4_4732 0.31 +0.2 5,230,411 + Pf1N1B4_4732 0.50 -0.0 5,230,507 + Pf1N1B4_4732 0.58 +1.1 5,230,507 + +0.6 5,230,687 + Pf1N1B4_4732 0.74 +1.7 5,230,688 - Pf1N1B4_4732 0.74 +0.7 5,230,696 + Pf1N1B4_4732 0.74 +0.6 5,230,696 + Pf1N1B4_4732 0.74 -0.0 5,230,756 + Pf1N1B4_4732 0.80 +0.2 5,230,947 + +0.2 5,231,008 - +0.1 5,231,038 + -0.3 5,231,038 + +0.0 5,231,038 + -0.3 5,231,039 - -0.0 5,231,039 - +0.6 5,231,039 - +0.0 5,231,078 + +0.0 5,231,078 + -0.3 5,231,127 + -1.6 5,231,128 - -0.4 5,231,148 + -0.1 5,231,148 + +0.3 5,231,148 + +1.2 5,231,371 - Pf1N1B4_4733 0.30 +0.4 5,231,504 + -1.0 5,231,514 + Pf1N1B4_4733 0.49 +1.6 5,231,643 - Pf1N1B4_4733 0.67 -0.2 5,231,643 - Pf1N1B4_4733 0.67 -0.4 5,231,643 - Pf1N1B4_4733 0.67 +0.6 5,231,698 + Pf1N1B4_4733 0.74 -0.9 5,231,698 + Pf1N1B4_4733 0.74 -0.4
Or see this region's nucleotide sequence