Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4562

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4561 and Pf1N1B4_4562 are separated by 278 nucleotidesPf1N1B4_4562 and Pf1N1B4_4563 are separated by 206 nucleotides Pf1N1B4_4561 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 5,031,908 to 5,032,483 _4561 Pf1N1B4_4562 - Serine transporter, at 5,032,762 to 5,034,042 _4562 Pf1N1B4_4563 - Sulfate transporter, at 5,034,249 to 5,035,925 _4563 Position (kb) 5032 5033 5034 5035Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5031.791 kb on + strandat 5031.843 kb on - strandat 5032.074 kb on + strand, within Pf1N1B4_4561at 5032.075 kb on - strand, within Pf1N1B4_4561at 5032.075 kb on - strand, within Pf1N1B4_4561at 5032.077 kb on + strand, within Pf1N1B4_4561at 5032.335 kb on - strand, within Pf1N1B4_4561at 5032.410 kb on + strand, within Pf1N1B4_4561at 5032.410 kb on + strand, within Pf1N1B4_4561at 5032.410 kb on + strand, within Pf1N1B4_4561at 5032.410 kb on + strand, within Pf1N1B4_4561at 5032.410 kb on + strand, within Pf1N1B4_4561at 5032.411 kb on - strandat 5032.411 kb on - strand, within Pf1N1B4_4561at 5032.411 kb on - strand, within Pf1N1B4_4561at 5032.414 kb on + strand, within Pf1N1B4_4561at 5032.415 kb on - strand, within Pf1N1B4_4561at 5032.439 kb on - strandat 5032.583 kb on - strandat 5032.635 kb on - strandat 5032.795 kb on + strandat 5032.796 kb on - strandat 5033.001 kb on - strand, within Pf1N1B4_4562at 5033.087 kb on - strandat 5033.119 kb on + strandat 5033.208 kb on - strand, within Pf1N1B4_4562at 5033.700 kb on + strand, within Pf1N1B4_4562at 5033.700 kb on + strand, within Pf1N1B4_4562at 5033.725 kb on + strand, within Pf1N1B4_4562at 5034.025 kb on + strandat 5034.026 kb on - strandat 5034.048 kb on - strandat 5034.139 kb on + strandat 5034.293 kb on - strandat 5034.313 kb on + strandat 5034.314 kb on - strandat 5034.314 kb on - strandat 5034.857 kb on - strandat 5034.988 kb on + strand, within Pf1N1B4_4563at 5035.029 kb on + strand, within Pf1N1B4_4563

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,031,791 + -1.4
5,031,843 - +0.8
5,032,074 + Pf1N1B4_4561 0.29 -1.8
5,032,075 - Pf1N1B4_4561 0.29 -0.4
5,032,075 - Pf1N1B4_4561 0.29 -0.9
5,032,077 + Pf1N1B4_4561 0.29 -0.7
5,032,335 - Pf1N1B4_4561 0.74 -1.9
5,032,410 + Pf1N1B4_4561 0.87 -0.6
5,032,410 + Pf1N1B4_4561 0.87 -0.6
5,032,410 + Pf1N1B4_4561 0.87 -0.4
5,032,410 + Pf1N1B4_4561 0.87 -0.4
5,032,410 + Pf1N1B4_4561 0.87 -0.9
5,032,411 - -0.4
5,032,411 - Pf1N1B4_4561 0.87 +0.3
5,032,411 - Pf1N1B4_4561 0.87 +0.6
5,032,414 + Pf1N1B4_4561 0.88 -1.9
5,032,415 - Pf1N1B4_4561 0.88 -1.4
5,032,439 - +0.9
5,032,583 - -2.4
5,032,635 - -1.7
5,032,795 + +0.3
5,032,796 - -2.4
5,033,001 - Pf1N1B4_4562 0.19 -2.7
5,033,087 - -0.9
5,033,119 + -1.7
5,033,208 - Pf1N1B4_4562 0.35 -2.5
5,033,700 + Pf1N1B4_4562 0.73 -0.4
5,033,700 + Pf1N1B4_4562 0.73 -2.8
5,033,725 + Pf1N1B4_4562 0.75 -0.4
5,034,025 + -2.5
5,034,026 - -1.9
5,034,048 - -2.7
5,034,139 + -1.5
5,034,293 - -2.4
5,034,313 + -0.2
5,034,314 - -3.8
5,034,314 - -2.4
5,034,857 - +0.6
5,034,988 + Pf1N1B4_4563 0.44 +1.3
5,035,029 + Pf1N1B4_4563 0.47 -1.5

Or see this region's nucleotide sequence