Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4559 and Pf1N1B4_4560 are separated by 129 nucleotides Pf1N1B4_4560 and Pf1N1B4_4561 are separated by 184 nucleotides Pf1N1B4_4561 and Pf1N1B4_4562 are separated by 278 nucleotides
Pf1N1B4_4559 - Predicted exporter of the RND superfamily, at 5,028,595 to 5,031,210
_4559
Pf1N1B4_4560 - Transcriptional regulator, MerR family, at 5,031,340 to 5,031,723
_4560
Pf1N1B4_4561 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 5,031,908 to 5,032,483
_4561
Pf1N1B4_4562 - Serine transporter, at 5,032,762 to 5,034,042
_4562
Position (kb) 5031
5032
5033 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5031.084 kb on - strand at 5031.186 kb on - strand at 5031.209 kb on - strand at 5031.302 kb on - strand at 5031.351 kb on + strand at 5031.477 kb on + strand, within Pf1N1B4_4560 at 5031.477 kb on + strand, within Pf1N1B4_4560 at 5031.477 kb on + strand, within Pf1N1B4_4560 at 5031.611 kb on + strand, within Pf1N1B4_4560 at 5031.611 kb on + strand, within Pf1N1B4_4560 at 5031.719 kb on + strand at 5031.720 kb on - strand at 5031.791 kb on + strand at 5031.843 kb on - strand at 5032.074 kb on + strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.077 kb on + strand, within Pf1N1B4_4561 at 5032.335 kb on - strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.411 kb on - strand at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.414 kb on + strand, within Pf1N1B4_4561 at 5032.415 kb on - strand, within Pf1N1B4_4561 at 5032.439 kb on - strand at 5032.583 kb on - strand at 5032.635 kb on - strand at 5032.795 kb on + strand at 5032.796 kb on - strand at 5033.001 kb on - strand, within Pf1N1B4_4562 at 5033.087 kb on - strand at 5033.119 kb on + strand at 5033.208 kb on - strand, within Pf1N1B4_4562
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,031,084 - -1.5 5,031,186 - -0.5 5,031,209 - -1.7 5,031,302 - -0.3 5,031,351 + -2.0 5,031,477 + Pf1N1B4_4560 0.36 -0.5 5,031,477 + Pf1N1B4_4560 0.36 -1.7 5,031,477 + Pf1N1B4_4560 0.36 -1.9 5,031,611 + Pf1N1B4_4560 0.71 -1.9 5,031,611 + Pf1N1B4_4560 0.71 -0.9 5,031,719 + -2.9 5,031,720 - -0.2 5,031,791 + -1.4 5,031,843 - +0.8 5,032,074 + Pf1N1B4_4561 0.29 -1.8 5,032,075 - Pf1N1B4_4561 0.29 -0.4 5,032,075 - Pf1N1B4_4561 0.29 -0.9 5,032,077 + Pf1N1B4_4561 0.29 -0.7 5,032,335 - Pf1N1B4_4561 0.74 -1.9 5,032,410 + Pf1N1B4_4561 0.87 -0.6 5,032,410 + Pf1N1B4_4561 0.87 -0.6 5,032,410 + Pf1N1B4_4561 0.87 -0.4 5,032,410 + Pf1N1B4_4561 0.87 -0.4 5,032,410 + Pf1N1B4_4561 0.87 -0.9 5,032,411 - -0.4 5,032,411 - Pf1N1B4_4561 0.87 +0.3 5,032,411 - Pf1N1B4_4561 0.87 +0.6 5,032,414 + Pf1N1B4_4561 0.88 -1.9 5,032,415 - Pf1N1B4_4561 0.88 -1.4 5,032,439 - +0.9 5,032,583 - -2.4 5,032,635 - -1.7 5,032,795 + +0.3 5,032,796 - -2.4 5,033,001 - Pf1N1B4_4562 0.19 -2.7 5,033,087 - -0.9 5,033,119 + -1.7 5,033,208 - Pf1N1B4_4562 0.35 -2.5
Or see this region's nucleotide sequence