Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4551

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4550 and Pf1N1B4_4551 are separated by 26 nucleotidesPf1N1B4_4551 and Pf1N1B4_4552 overlap by 4 nucleotides Pf1N1B4_4550 - beta-ketoacyl synthase, putative, at 5,018,349 to 5,019,431 _4550 Pf1N1B4_4551 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 5,019,458 to 5,020,723 _4551 Pf1N1B4_4552 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 5,020,720 to 5,021,940 _4552 Position (kb) 5019 5020 5021Strain fitness (log2 ratio) -2 -1 0 1 2at 5018.572 kb on - strand, within Pf1N1B4_4550at 5018.657 kb on - strand, within Pf1N1B4_4550at 5018.716 kb on + strand, within Pf1N1B4_4550at 5018.738 kb on + strand, within Pf1N1B4_4550at 5018.739 kb on - strand, within Pf1N1B4_4550at 5018.930 kb on + strand, within Pf1N1B4_4550at 5018.950 kb on - strandat 5020.076 kb on + strandat 5020.268 kb on + strand, within Pf1N1B4_4551at 5020.559 kb on - strand, within Pf1N1B4_4551at 5020.610 kb on + strandat 5020.610 kb on + strandat 5020.706 kb on + strandat 5020.707 kb on - strandat 5020.707 kb on - strandat 5020.708 kb on + strandat 5020.709 kb on - strandat 5021.205 kb on + strand, within Pf1N1B4_4552at 5021.205 kb on + strand, within Pf1N1B4_4552at 5021.205 kb on + strand, within Pf1N1B4_4552at 5021.260 kb on + strand, within Pf1N1B4_4552at 5021.260 kb on + strandat 5021.260 kb on + strand, within Pf1N1B4_4552at 5021.260 kb on + strand, within Pf1N1B4_4552at 5021.260 kb on + strand, within Pf1N1B4_4552at 5021.261 kb on - strand, within Pf1N1B4_4552at 5021.340 kb on + strand, within Pf1N1B4_4552at 5021.341 kb on - strand, within Pf1N1B4_4552at 5021.600 kb on + strand, within Pf1N1B4_4552at 5021.679 kb on + strand, within Pf1N1B4_4552at 5021.679 kb on + strand, within Pf1N1B4_4552at 5021.680 kb on - strandat 5021.680 kb on - strand, within Pf1N1B4_4552at 5021.680 kb on - strand, within Pf1N1B4_4552

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
5,018,572 - Pf1N1B4_4550 0.21 -0.9
5,018,657 - Pf1N1B4_4550 0.28 -0.7
5,018,716 + Pf1N1B4_4550 0.34 -1.0
5,018,738 + Pf1N1B4_4550 0.36 -1.3
5,018,739 - Pf1N1B4_4550 0.36 +1.4
5,018,930 + Pf1N1B4_4550 0.54 -2.2
5,018,950 - -1.3
5,020,076 + +0.4
5,020,268 + Pf1N1B4_4551 0.64 -1.9
5,020,559 - Pf1N1B4_4551 0.87 +0.1
5,020,610 + -1.9
5,020,610 + -1.6
5,020,706 + -1.5
5,020,707 - +2.4
5,020,707 - +0.6
5,020,708 + -0.6
5,020,709 - +0.2
5,021,205 + Pf1N1B4_4552 0.40 -0.8
5,021,205 + Pf1N1B4_4552 0.40 -1.2
5,021,205 + Pf1N1B4_4552 0.40 -0.8
5,021,260 + Pf1N1B4_4552 0.44 -0.9
5,021,260 + -0.3
5,021,260 + Pf1N1B4_4552 0.44 -1.9
5,021,260 + Pf1N1B4_4552 0.44 -0.9
5,021,260 + Pf1N1B4_4552 0.44 -0.8
5,021,261 - Pf1N1B4_4552 0.44 +0.8
5,021,340 + Pf1N1B4_4552 0.51 -0.7
5,021,341 - Pf1N1B4_4552 0.51 +0.5
5,021,600 + Pf1N1B4_4552 0.72 -0.8
5,021,679 + Pf1N1B4_4552 0.79 -0.9
5,021,679 + Pf1N1B4_4552 0.79 -1.3
5,021,680 - +0.1
5,021,680 - Pf1N1B4_4552 0.79 +0.8
5,021,680 - Pf1N1B4_4552 0.79 +1.2

Or see this region's nucleotide sequence