Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4550 and Pf1N1B4_4551 are separated by 26 nucleotides Pf1N1B4_4551 and Pf1N1B4_4552 overlap by 4 nucleotides
Pf1N1B4_4550 - beta-ketoacyl synthase, putative, at 5,018,349 to 5,019,431
_4550
Pf1N1B4_4551 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 5,019,458 to 5,020,723
_4551
Pf1N1B4_4552 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 5,020,720 to 5,021,940
_4552
Position (kb)
5019
5020
5021 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5018.572 kb on - strand, within Pf1N1B4_4550 at 5018.657 kb on - strand, within Pf1N1B4_4550 at 5018.716 kb on + strand, within Pf1N1B4_4550 at 5018.738 kb on + strand, within Pf1N1B4_4550 at 5018.739 kb on - strand, within Pf1N1B4_4550 at 5018.930 kb on + strand, within Pf1N1B4_4550 at 5018.950 kb on - strand at 5020.076 kb on + strand at 5020.268 kb on + strand, within Pf1N1B4_4551 at 5020.559 kb on - strand, within Pf1N1B4_4551 at 5020.610 kb on + strand at 5020.610 kb on + strand at 5020.706 kb on + strand at 5020.707 kb on - strand at 5020.707 kb on - strand at 5020.708 kb on + strand at 5020.709 kb on - strand at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.261 kb on - strand, within Pf1N1B4_4552 at 5021.340 kb on + strand, within Pf1N1B4_4552 at 5021.341 kb on - strand, within Pf1N1B4_4552 at 5021.600 kb on + strand, within Pf1N1B4_4552 at 5021.679 kb on + strand, within Pf1N1B4_4552 at 5021.679 kb on + strand, within Pf1N1B4_4552 at 5021.680 kb on - strand at 5021.680 kb on - strand, within Pf1N1B4_4552 at 5021.680 kb on - strand, within Pf1N1B4_4552
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,018,572 - Pf1N1B4_4550 0.21 -0.9 5,018,657 - Pf1N1B4_4550 0.28 -0.7 5,018,716 + Pf1N1B4_4550 0.34 -1.0 5,018,738 + Pf1N1B4_4550 0.36 -1.3 5,018,739 - Pf1N1B4_4550 0.36 +1.4 5,018,930 + Pf1N1B4_4550 0.54 -2.2 5,018,950 - -1.3 5,020,076 + +0.4 5,020,268 + Pf1N1B4_4551 0.64 -1.9 5,020,559 - Pf1N1B4_4551 0.87 +0.1 5,020,610 + -1.9 5,020,610 + -1.6 5,020,706 + -1.5 5,020,707 - +2.4 5,020,707 - +0.6 5,020,708 + -0.6 5,020,709 - +0.2 5,021,205 + Pf1N1B4_4552 0.40 -0.8 5,021,205 + Pf1N1B4_4552 0.40 -1.2 5,021,205 + Pf1N1B4_4552 0.40 -0.8 5,021,260 + Pf1N1B4_4552 0.44 -0.9 5,021,260 + -0.3 5,021,260 + Pf1N1B4_4552 0.44 -1.9 5,021,260 + Pf1N1B4_4552 0.44 -0.9 5,021,260 + Pf1N1B4_4552 0.44 -0.8 5,021,261 - Pf1N1B4_4552 0.44 +0.8 5,021,340 + Pf1N1B4_4552 0.51 -0.7 5,021,341 - Pf1N1B4_4552 0.51 +0.5 5,021,600 + Pf1N1B4_4552 0.72 -0.8 5,021,679 + Pf1N1B4_4552 0.79 -0.9 5,021,679 + Pf1N1B4_4552 0.79 -1.3 5,021,680 - +0.1 5,021,680 - Pf1N1B4_4552 0.79 +0.8 5,021,680 - Pf1N1B4_4552 0.79 +1.2
Or see this region's nucleotide sequence