Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4544 and Pf1N1B4_4545 are separated by 88 nucleotides Pf1N1B4_4545 and Pf1N1B4_4546 overlap by 2 nucleotides Pf1N1B4_4546 and Pf1N1B4_4547 are separated by 365 nucleotides
Pf1N1B4_4544 - Uncharacterized protein ImpA, at 5,013,543 to 5,014,181
_4544
Pf1N1B4_4545 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 5,014,270 to 5,014,758
_4545
Pf1N1B4_4546 - hypothetical protein, at 5,014,757 to 5,015,215
_4546
Pf1N1B4_4547 - Mobile element protein, at 5,015,581 to 5,015,805
_4547
Position (kb)
5014
5015 Strain fitness (log2 ratio)
-2
-1
0
1 at 5013.790 kb on - strand, within Pf1N1B4_4544 at 5014.030 kb on - strand, within Pf1N1B4_4544 at 5014.065 kb on + strand, within Pf1N1B4_4544 at 5014.179 kb on + strand at 5015.115 kb on + strand, within Pf1N1B4_4546 at 5015.288 kb on + strand at 5015.300 kb on + strand at 5015.300 kb on + strand at 5015.300 kb on + strand at 5015.300 kb on + strand at 5015.301 kb on - strand at 5015.301 kb on - strand at 5015.301 kb on - strand at 5015.397 kb on + strand at 5015.397 kb on + strand at 5015.397 kb on + strand at 5015.408 kb on + strand at 5015.409 kb on - strand at 5015.443 kb on + strand at 5015.443 kb on + strand at 5015.444 kb on - strand at 5015.444 kb on - strand at 5015.444 kb on - strand at 5015.495 kb on - strand at 5015.676 kb on - strand, within Pf1N1B4_4547
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,013,790 - Pf1N1B4_4544 0.39 +0.1 5,014,030 - Pf1N1B4_4544 0.76 +0.2 5,014,065 + Pf1N1B4_4544 0.82 -1.1 5,014,179 + -0.1 5,015,115 + Pf1N1B4_4546 0.78 -0.4 5,015,288 + -0.5 5,015,300 + -0.4 5,015,300 + +1.2 5,015,300 + -0.0 5,015,300 + -0.2 5,015,301 - +0.4 5,015,301 - -0.2 5,015,301 - +0.9 5,015,397 + +0.5 5,015,397 + +0.0 5,015,397 + -0.4 5,015,408 + -0.7 5,015,409 - +0.5 5,015,443 + -1.8 5,015,443 + -0.6 5,015,444 - +0.2 5,015,444 - +0.5 5,015,444 - -1.2 5,015,495 - +0.8 5,015,676 - Pf1N1B4_4547 0.42 +1.1
Or see this region's nucleotide sequence