Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4272

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4271 and Pf1N1B4_4272 are separated by 173 nucleotidesPf1N1B4_4272 and Pf1N1B4_4273 are separated by 74 nucleotides Pf1N1B4_4271 - Hydrogen cyanide synthase HcnC / Opine oxidase subunit B, at 4,735,047 to 4,736,306 _4271 Pf1N1B4_4272 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 4,736,480 to 4,737,091 _4272 Pf1N1B4_4273 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 4,737,166 to 4,738,086 _4273 Position (kb) 4736 4737 4738Strain fitness (log2 ratio) -1 0 1at 4735.669 kb on - strand, within Pf1N1B4_4271at 4735.908 kb on + strandat 4736.027 kb on + strand, within Pf1N1B4_4271at 4736.027 kb on + strand, within Pf1N1B4_4271at 4736.028 kb on - strand, within Pf1N1B4_4271at 4736.028 kb on - strand, within Pf1N1B4_4271at 4736.256 kb on - strandat 4736.335 kb on + strandat 4736.353 kb on + strandat 4736.524 kb on - strandat 4736.524 kb on - strandat 4736.615 kb on - strandat 4737.060 kb on + strandat 4737.131 kb on + strandat 4737.132 kb on - strandat 4737.220 kb on - strandat 4737.220 kb on - strandat 4737.221 kb on + strandat 4737.222 kb on - strandat 4737.539 kb on + strand, within Pf1N1B4_4273at 4737.539 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strandat 4737.587 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strandat 4737.588 kb on - strand, within Pf1N1B4_4273at 4737.761 kb on + strand, within Pf1N1B4_4273at 4737.875 kb on - strand, within Pf1N1B4_4273at 4737.875 kb on - strand, within Pf1N1B4_4273at 4737.941 kb on + strand, within Pf1N1B4_4273at 4737.941 kb on + strandat 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.980 kb on + strand, within Pf1N1B4_4273at 4737.981 kb on - strand, within Pf1N1B4_4273at 4738.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,735,669 - Pf1N1B4_4271 0.49 -0.5
4,735,908 + +0.1
4,736,027 + Pf1N1B4_4271 0.78 -0.3
4,736,027 + Pf1N1B4_4271 0.78 +0.6
4,736,028 - Pf1N1B4_4271 0.78 +0.4
4,736,028 - Pf1N1B4_4271 0.78 +0.4
4,736,256 - +0.4
4,736,335 + +0.3
4,736,353 + +0.7
4,736,524 - -0.1
4,736,524 - +0.3
4,736,615 - -0.0
4,737,060 + -0.7
4,737,131 + +0.1
4,737,132 - -0.0
4,737,220 - -0.1
4,737,220 - -1.3
4,737,221 + +0.7
4,737,222 - +0.1
4,737,539 + Pf1N1B4_4273 0.40 -0.1
4,737,539 + Pf1N1B4_4273 0.40 +0.5
4,737,587 + Pf1N1B4_4273 0.46 +0.5
4,737,587 + -0.3
4,737,587 + Pf1N1B4_4273 0.46 +1.0
4,737,587 + +1.1
4,737,588 - Pf1N1B4_4273 0.46 -0.3
4,737,761 + Pf1N1B4_4273 0.65 +0.1
4,737,875 - Pf1N1B4_4273 0.77 -0.2
4,737,875 - Pf1N1B4_4273 0.77 -0.3
4,737,941 + Pf1N1B4_4273 0.84 -0.2
4,737,941 + +1.7
4,737,942 - Pf1N1B4_4273 0.84 -0.8
4,737,942 - Pf1N1B4_4273 0.84 -0.4
4,737,942 - Pf1N1B4_4273 0.84 +0.9
4,737,980 + Pf1N1B4_4273 0.88 +0.4
4,737,981 - Pf1N1B4_4273 0.88 +0.7
4,738,087 - +0.7

Or see this region's nucleotide sequence