Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3677 and Pf1N1B4_3678 overlap by 7 nucleotides Pf1N1B4_3678 and Pf1N1B4_3679 are separated by 3 nucleotides Pf1N1B4_3679 and Pf1N1B4_3680 are separated by 11 nucleotides Pf1N1B4_3680 and Pf1N1B4_3681 are separated by 276 nucleotides
Pf1N1B4_3677 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,084,835 to 4,085,092
_3677
Pf1N1B4_3678 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,085,086 to 4,085,454
_3678
Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230
_3679
Pf1N1B4_3680 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 4,087,242 to 4,087,946
_3680
Pf1N1B4_3681 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 4,088,223 to 4,091,054
_3681
Position (kb)
4085
4086
4087
4088 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4084.506 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.535 kb on + strand at 4084.535 kb on + strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.563 kb on + strand at 4084.563 kb on + strand at 4084.571 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4087.972 kb on + strand at 4087.981 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4088.034 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.068 kb on + strand at 4088.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 4,084,506 - -0.6 4,084,515 - -0.7 4,084,515 - -1.3 4,084,515 - -0.7 4,084,515 - +0.3 4,084,515 - -0.8 4,084,535 + -1.1 4,084,535 + -1.3 4,084,536 - +0.0 4,084,536 - -0.8 4,084,536 - -2.3 4,084,536 - -3.3 4,084,536 - -2.1 4,084,563 + -1.4 4,084,563 + -1.2 4,084,571 + -1.1 4,084,579 + -1.7 4,084,579 + -2.1 4,084,579 + -0.8 4,084,579 + +0.3 4,084,579 + -0.8 4,087,972 + +1.0 4,087,981 + -1.9 4,087,995 + +0.9 4,087,995 + +1.1 4,087,995 + +0.4 4,087,995 + +0.2 4,087,995 + -0.3 4,088,034 + -0.5 4,088,051 + +2.2 4,088,051 + +0.9 4,088,051 + +0.6 4,088,051 + -1.8 4,088,051 + +0.6 4,088,051 + +0.5 4,088,053 + -0.2 4,088,053 + +0.2 4,088,053 + -0.3 4,088,053 + +0.5 4,088,053 + +0.3 4,088,053 + -0.3 4,088,053 + +0.3 4,088,068 + -0.3 4,088,068 + -0.4
Or see this region's nucleotide sequence