Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3679

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3677 and Pf1N1B4_3678 overlap by 7 nucleotidesPf1N1B4_3678 and Pf1N1B4_3679 are separated by 3 nucleotidesPf1N1B4_3679 and Pf1N1B4_3680 are separated by 11 nucleotidesPf1N1B4_3680 and Pf1N1B4_3681 are separated by 276 nucleotides Pf1N1B4_3677 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,084,835 to 4,085,092 _3677 Pf1N1B4_3678 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,085,086 to 4,085,454 _3678 Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230 _3679 Pf1N1B4_3680 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 4,087,242 to 4,087,946 _3680 Pf1N1B4_3681 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 4,088,223 to 4,091,054 _3681 Position (kb) 4085 4086 4087 4088Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4084.506 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.535 kb on + strandat 4084.535 kb on + strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.563 kb on + strandat 4084.563 kb on + strandat 4084.571 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4087.972 kb on + strandat 4087.981 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4088.034 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.068 kb on + strandat 4088.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,084,506 - -0.6
4,084,515 - -0.7
4,084,515 - -1.3
4,084,515 - -0.7
4,084,515 - +0.3
4,084,515 - -0.8
4,084,535 + -1.1
4,084,535 + -1.3
4,084,536 - +0.0
4,084,536 - -0.8
4,084,536 - -2.3
4,084,536 - -3.3
4,084,536 - -2.1
4,084,563 + -1.4
4,084,563 + -1.2
4,084,571 + -1.1
4,084,579 + -1.7
4,084,579 + -2.1
4,084,579 + -0.8
4,084,579 + +0.3
4,084,579 + -0.8
4,087,972 + +1.0
4,087,981 + -1.9
4,087,995 + +0.9
4,087,995 + +1.1
4,087,995 + +0.4
4,087,995 + +0.2
4,087,995 + -0.3
4,088,034 + -0.5
4,088,051 + +2.2
4,088,051 + +0.9
4,088,051 + +0.6
4,088,051 + -1.8
4,088,051 + +0.6
4,088,051 + +0.5
4,088,053 + -0.2
4,088,053 + +0.2
4,088,053 + -0.3
4,088,053 + +0.5
4,088,053 + +0.3
4,088,053 + -0.3
4,088,053 + +0.3
4,088,068 + -0.3
4,088,068 + -0.4

Or see this region's nucleotide sequence