Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_269

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_268 and Pf1N1B4_269 are separated by 151 nucleotidesPf1N1B4_269 and Pf1N1B4_270 are separated by 199 nucleotides Pf1N1B4_268 - Spermidine synthase (EC 2.5.1.16), at 327,906 to 328,661 _268 Pf1N1B4_269 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54), at 328,813 to 330,159 _269 Pf1N1B4_270 - FIG074102: hypothetical protein, at 330,359 to 331,588 _270 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 327.907 kb on + strandat 327.907 kb on + strandat 327.908 kb on - strandat 327.908 kb on - strandat 327.908 kb on - strandat 327.908 kb on - strandat 327.908 kb on - strandat 327.908 kb on - strandat 328.082 kb on - strand, within Pf1N1B4_268at 328.231 kb on + strand, within Pf1N1B4_268at 328.232 kb on - strand, within Pf1N1B4_268at 328.232 kb on - strand, within Pf1N1B4_268at 328.276 kb on - strand, within Pf1N1B4_268at 328.303 kb on + strand, within Pf1N1B4_268at 328.303 kb on + strand, within Pf1N1B4_268at 328.304 kb on - strand, within Pf1N1B4_268at 328.304 kb on - strand, within Pf1N1B4_268at 328.304 kb on - strand, within Pf1N1B4_268at 328.304 kb on - strand, within Pf1N1B4_268at 328.333 kb on + strand, within Pf1N1B4_268at 328.334 kb on - strand, within Pf1N1B4_268at 328.502 kb on - strand, within Pf1N1B4_268at 328.507 kb on + strand, within Pf1N1B4_268at 328.507 kb on + strand, within Pf1N1B4_268at 328.508 kb on - strand, within Pf1N1B4_268at 328.623 kb on + strandat 328.623 kb on + strandat 328.624 kb on - strandat 328.696 kb on + strandat 328.696 kb on + strandat 328.696 kb on + strandat 328.696 kb on + strandat 328.696 kb on + strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.697 kb on - strandat 328.699 kb on + strandat 328.699 kb on + strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.700 kb on - strandat 328.765 kb on + strandat 328.765 kb on + strandat 328.765 kb on + strandat 328.766 kb on - strandat 328.766 kb on - strandat 328.775 kb on + strandat 328.780 kb on + strandat 328.781 kb on - strandat 328.781 kb on - strandat 328.794 kb on + strandat 328.795 kb on - strandat 328.802 kb on + strandat 329.067 kb on + strand, within Pf1N1B4_269at 329.255 kb on + strand, within Pf1N1B4_269at 329.256 kb on - strand, within Pf1N1B4_269at 329.316 kb on - strand, within Pf1N1B4_269at 329.316 kb on - strand, within Pf1N1B4_269at 329.316 kb on - strand, within Pf1N1B4_269at 329.316 kb on - strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.407 kb on + strand, within Pf1N1B4_269at 329.408 kb on - strand, within Pf1N1B4_269at 329.408 kb on - strand, within Pf1N1B4_269at 329.408 kb on - strand, within Pf1N1B4_269at 329.530 kb on + strand, within Pf1N1B4_269at 329.530 kb on + strandat 329.530 kb on + strand, within Pf1N1B4_269at 329.572 kb on + strand, within Pf1N1B4_269at 329.573 kb on - strand, within Pf1N1B4_269at 329.575 kb on + strandat 329.575 kb on + strand, within Pf1N1B4_269at 329.575 kb on + strand, within Pf1N1B4_269at 329.575 kb on + strand, within Pf1N1B4_269at 329.576 kb on - strand, within Pf1N1B4_269at 329.576 kb on - strand, within Pf1N1B4_269at 329.576 kb on - strand, within Pf1N1B4_269at 329.896 kb on + strand, within Pf1N1B4_269at 329.972 kb on - strand, within Pf1N1B4_269at 329.972 kb on - strand, within Pf1N1B4_269at 329.972 kb on - strand, within Pf1N1B4_269at 330.177 kb on + strandat 330.238 kb on + strandat 330.307 kb on - strandat 330.307 kb on - strandat 330.307 kb on - strandat 330.307 kb on - strandat 330.307 kb on - strandat 330.563 kb on + strand, within Pf1N1B4_270at 330.564 kb on - strand, within Pf1N1B4_270at 330.608 kb on + strand, within Pf1N1B4_270at 330.609 kb on - strand, within Pf1N1B4_270at 330.609 kb on - strand, within Pf1N1B4_270at 330.609 kb on - strand, within Pf1N1B4_270at 330.612 kb on + strand, within Pf1N1B4_270at 330.612 kb on + strand, within Pf1N1B4_270at 330.612 kb on + strand, within Pf1N1B4_270at 330.612 kb on + strand, within Pf1N1B4_270at 330.612 kb on + strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.613 kb on - strand, within Pf1N1B4_270at 330.616 kb on - strand, within Pf1N1B4_270at 330.616 kb on - strand, within Pf1N1B4_270at 330.621 kb on + strand, within Pf1N1B4_270at 330.622 kb on - strand, within Pf1N1B4_270at 330.644 kb on - strand, within Pf1N1B4_270at 330.645 kb on + strandat 330.645 kb on + strand, within Pf1N1B4_270at 330.645 kb on + strand, within Pf1N1B4_270at 330.646 kb on - strand, within Pf1N1B4_270at 330.646 kb on - strand, within Pf1N1B4_270at 330.646 kb on - strand, within Pf1N1B4_270at 330.646 kb on - strand, within Pf1N1B4_270at 330.646 kb on - strand, within Pf1N1B4_270

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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327,907 + -0.7
327,907 + -0.1
327,908 - +0.6
327,908 - +0.5
327,908 - -1.1
327,908 - +1.4
327,908 - -1.7
327,908 - +1.1
328,082 - Pf1N1B4_268 0.23 -0.9
328,231 + Pf1N1B4_268 0.43 -0.6
328,232 - Pf1N1B4_268 0.43 +0.4
328,232 - Pf1N1B4_268 0.43 +0.9
328,276 - Pf1N1B4_268 0.49 +0.5
328,303 + Pf1N1B4_268 0.53 +0.9
328,303 + Pf1N1B4_268 0.53 +0.1
328,304 - Pf1N1B4_268 0.53 +1.0
328,304 - Pf1N1B4_268 0.53 +0.3
328,304 - Pf1N1B4_268 0.53 -0.1
328,304 - Pf1N1B4_268 0.53 -0.0
328,333 + Pf1N1B4_268 0.56 -0.5
328,334 - Pf1N1B4_268 0.57 -0.8
328,502 - Pf1N1B4_268 0.79 +0.6
328,507 + Pf1N1B4_268 0.79 +0.7
328,507 + Pf1N1B4_268 0.79 +0.1
328,508 - Pf1N1B4_268 0.80 +0.2
328,623 + +0.6
328,623 + +1.0
328,624 - -0.1
328,696 + +0.5
328,696 + -0.8
328,696 + -0.1
328,696 + -0.9
328,696 + -0.1
328,697 - +0.9
328,697 - -0.8
328,697 - +1.2
328,697 - -0.1
328,697 - -0.4
328,697 - +0.2
328,697 - -1.9
328,697 - +0.5
328,697 - -0.6
328,699 + +2.9
328,699 + +0.9
328,700 - -1.2
328,700 - +0.6
328,700 - +1.1
328,700 - +0.2
328,700 - +0.9
328,700 - +1.4
328,700 - +0.3
328,700 - -0.1
328,765 + -0.8
328,765 + -1.1
328,765 + -2.9
328,766 - -0.3
328,766 - +0.3
328,775 + +0.3
328,780 + -0.1
328,781 - +0.2
328,781 - -0.7
328,794 + +0.3
328,795 - +0.9
328,802 + +0.1
329,067 + Pf1N1B4_269 0.19 -0.5
329,255 + Pf1N1B4_269 0.33 -0.2
329,256 - Pf1N1B4_269 0.33 +0.8
329,316 - Pf1N1B4_269 0.37 -0.6
329,316 - Pf1N1B4_269 0.37 -0.5
329,316 - Pf1N1B4_269 0.37 -0.2
329,316 - Pf1N1B4_269 0.37 +1.3
329,407 + Pf1N1B4_269 0.44 -0.2
329,407 + Pf1N1B4_269 0.44 -1.1
329,407 + Pf1N1B4_269 0.44 +0.0
329,407 + Pf1N1B4_269 0.44 +0.4
329,407 + Pf1N1B4_269 0.44 +0.5
329,407 + Pf1N1B4_269 0.44 -0.7
329,407 + Pf1N1B4_269 0.44 +0.9
329,408 - Pf1N1B4_269 0.44 +0.7
329,408 - Pf1N1B4_269 0.44 +0.9
329,408 - Pf1N1B4_269 0.44 +0.1
329,530 + Pf1N1B4_269 0.53 +0.0
329,530 + -0.5
329,530 + Pf1N1B4_269 0.53 -0.5
329,572 + Pf1N1B4_269 0.56 -1.6
329,573 - Pf1N1B4_269 0.56 -1.0
329,575 + -0.6
329,575 + Pf1N1B4_269 0.57 -0.5
329,575 + Pf1N1B4_269 0.57 -1.1
329,575 + Pf1N1B4_269 0.57 -0.2
329,576 - Pf1N1B4_269 0.57 -0.3
329,576 - Pf1N1B4_269 0.57 +0.9
329,576 - Pf1N1B4_269 0.57 +0.3
329,896 + Pf1N1B4_269 0.80 -0.3
329,972 - Pf1N1B4_269 0.86 +1.2
329,972 - Pf1N1B4_269 0.86 +0.1
329,972 - Pf1N1B4_269 0.86 -0.5
330,177 + +0.9
330,238 + +0.0
330,307 - +0.1
330,307 - -0.2
330,307 - -0.4
330,307 - +0.3
330,307 - -0.5
330,563 + Pf1N1B4_270 0.17 +0.9
330,564 - Pf1N1B4_270 0.17 -0.3
330,608 + Pf1N1B4_270 0.20 +0.2
330,609 - Pf1N1B4_270 0.20 +0.7
330,609 - Pf1N1B4_270 0.20 +0.4
330,609 - Pf1N1B4_270 0.20 -0.1
330,612 + Pf1N1B4_270 0.21 +0.0
330,612 + Pf1N1B4_270 0.21 -1.9
330,612 + Pf1N1B4_270 0.21 -0.4
330,612 + Pf1N1B4_270 0.21 -0.6
330,612 + Pf1N1B4_270 0.21 +0.0
330,613 - Pf1N1B4_270 0.21 -0.2
330,613 - Pf1N1B4_270 0.21 -0.0
330,613 - Pf1N1B4_270 0.21 +1.1
330,613 - Pf1N1B4_270 0.21 -0.4
330,613 - Pf1N1B4_270 0.21 -0.6
330,613 - Pf1N1B4_270 0.21 -0.9
330,613 - Pf1N1B4_270 0.21 +0.1
330,613 - Pf1N1B4_270 0.21 -0.1
330,613 - Pf1N1B4_270 0.21 +0.6
330,613 - Pf1N1B4_270 0.21 +1.1
330,616 - Pf1N1B4_270 0.21 +0.5
330,616 - Pf1N1B4_270 0.21 -0.6
330,621 + Pf1N1B4_270 0.21 -0.1
330,622 - Pf1N1B4_270 0.21 +0.5
330,644 - Pf1N1B4_270 0.23 -0.5
330,645 + +0.3
330,645 + Pf1N1B4_270 0.23 -0.2
330,645 + Pf1N1B4_270 0.23 -2.3
330,646 - Pf1N1B4_270 0.23 +0.2
330,646 - Pf1N1B4_270 0.23 +0.4
330,646 - Pf1N1B4_270 0.23 +0.4
330,646 - Pf1N1B4_270 0.23 +0.7
330,646 - Pf1N1B4_270 0.23 -1.3

Or see this region's nucleotide sequence