Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2438

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2437 and Pf1N1B4_2438 are separated by 78 nucleotidesPf1N1B4_2438 and Pf1N1B4_2439 are separated by 15 nucleotides Pf1N1B4_2437 - Microsomal dipeptidase (EC 3.4.13.19), at 2,760,349 to 2,761,326 _2437 Pf1N1B4_2438 - FIG00953113: hypothetical protein, at 2,761,405 to 2,761,935 _2438 Pf1N1B4_2439 - DgcA Dimethylglycine demethylase subunit A, at 2,761,951 to 2,764,011 _2439 Position (kb) 2761 2762Strain fitness (log2 ratio) -1 0 1 2 3 4at 2760.658 kb on + strand, within Pf1N1B4_2437at 2760.706 kb on + strand, within Pf1N1B4_2437at 2760.706 kb on + strand, within Pf1N1B4_2437at 2760.706 kb on + strand, within Pf1N1B4_2437at 2760.706 kb on + strand, within Pf1N1B4_2437at 2760.707 kb on - strand, within Pf1N1B4_2437at 2760.707 kb on - strand, within Pf1N1B4_2437at 2760.707 kb on - strand, within Pf1N1B4_2437at 2760.707 kb on - strand, within Pf1N1B4_2437at 2760.740 kb on - strand, within Pf1N1B4_2437at 2760.881 kb on - strand, within Pf1N1B4_2437at 2760.881 kb on - strand, within Pf1N1B4_2437at 2760.881 kb on - strand, within Pf1N1B4_2437at 2761.048 kb on + strand, within Pf1N1B4_2437at 2761.048 kb on + strand, within Pf1N1B4_2437at 2761.048 kb on + strand, within Pf1N1B4_2437at 2761.396 kb on + strandat 2761.397 kb on - strandat 2761.486 kb on + strand, within Pf1N1B4_2438at 2761.486 kb on + strand, within Pf1N1B4_2438at 2761.487 kb on - strand, within Pf1N1B4_2438at 2761.487 kb on - strand, within Pf1N1B4_2438at 2761.487 kb on - strand, within Pf1N1B4_2438at 2761.487 kb on - strand, within Pf1N1B4_2438at 2761.487 kb on - strand, within Pf1N1B4_2438at 2761.491 kb on - strand, within Pf1N1B4_2438at 2761.568 kb on - strand, within Pf1N1B4_2438at 2761.568 kb on - strand, within Pf1N1B4_2438at 2761.579 kb on + strand, within Pf1N1B4_2438at 2761.654 kb on + strand, within Pf1N1B4_2438at 2761.654 kb on + strand, within Pf1N1B4_2438at 2761.654 kb on + strand, within Pf1N1B4_2438at 2761.655 kb on - strand, within Pf1N1B4_2438at 2761.655 kb on - strand, within Pf1N1B4_2438at 2761.759 kb on + strand, within Pf1N1B4_2438at 2761.760 kb on - strand, within Pf1N1B4_2438at 2761.760 kb on - strand, within Pf1N1B4_2438at 2761.792 kb on + strand, within Pf1N1B4_2438at 2761.792 kb on + strand, within Pf1N1B4_2438at 2761.792 kb on + strand, within Pf1N1B4_2438at 2761.792 kb on + strand, within Pf1N1B4_2438at 2761.792 kb on + strand, within Pf1N1B4_2438at 2761.793 kb on - strand, within Pf1N1B4_2438at 2761.879 kb on + strand, within Pf1N1B4_2438at 2761.933 kb on + strandat 2761.933 kb on + strandat 2761.933 kb on + strandat 2761.933 kb on + strandat 2761.933 kb on + strandat 2761.933 kb on + strandat 2761.934 kb on - strandat 2761.934 kb on - strandat 2762.038 kb on + strandat 2762.038 kb on + strandat 2762.038 kb on + strandat 2762.039 kb on - strandat 2762.071 kb on + strandat 2762.071 kb on + strandat 2762.080 kb on + strandat 2762.080 kb on + strandat 2762.080 kb on + strandat 2762.080 kb on + strandat 2762.080 kb on + strandat 2762.081 kb on - strandat 2762.081 kb on - strandat 2762.081 kb on - strandat 2762.084 kb on - strandat 2762.404 kb on + strand, within Pf1N1B4_2439at 2762.404 kb on + strand, within Pf1N1B4_2439at 2762.404 kb on + strand, within Pf1N1B4_2439at 2762.405 kb on - strand, within Pf1N1B4_2439at 2762.405 kb on - strand, within Pf1N1B4_2439at 2762.405 kb on - strand, within Pf1N1B4_2439at 2762.405 kb on - strand, within Pf1N1B4_2439at 2762.684 kb on - strand, within Pf1N1B4_2439at 2762.684 kb on - strand, within Pf1N1B4_2439at 2762.684 kb on - strand, within Pf1N1B4_2439at 2762.686 kb on + strand, within Pf1N1B4_2439at 2762.884 kb on - strand, within Pf1N1B4_2439at 2762.899 kb on + strand, within Pf1N1B4_2439

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,760,658 + Pf1N1B4_2437 0.32 -0.1
2,760,706 + Pf1N1B4_2437 0.37 +0.4
2,760,706 + Pf1N1B4_2437 0.37 +1.6
2,760,706 + Pf1N1B4_2437 0.37 -0.3
2,760,706 + Pf1N1B4_2437 0.37 -1.1
2,760,707 - Pf1N1B4_2437 0.37 +0.7
2,760,707 - Pf1N1B4_2437 0.37 -0.1
2,760,707 - Pf1N1B4_2437 0.37 +2.1
2,760,707 - Pf1N1B4_2437 0.37 +1.1
2,760,740 - Pf1N1B4_2437 0.40 +1.7
2,760,881 - Pf1N1B4_2437 0.54 +1.3
2,760,881 - Pf1N1B4_2437 0.54 +1.3
2,760,881 - Pf1N1B4_2437 0.54 +1.3
2,761,048 + Pf1N1B4_2437 0.71 +1.5
2,761,048 + Pf1N1B4_2437 0.71 +1.9
2,761,048 + Pf1N1B4_2437 0.71 -0.0
2,761,396 + -0.1
2,761,397 - +1.6
2,761,486 + Pf1N1B4_2438 0.15 -0.7
2,761,486 + Pf1N1B4_2438 0.15 -0.3
2,761,487 - Pf1N1B4_2438 0.15 +1.1
2,761,487 - Pf1N1B4_2438 0.15 +0.9
2,761,487 - Pf1N1B4_2438 0.15 +1.7
2,761,487 - Pf1N1B4_2438 0.15 +0.9
2,761,487 - Pf1N1B4_2438 0.15 +1.1
2,761,491 - Pf1N1B4_2438 0.16 +1.1
2,761,568 - Pf1N1B4_2438 0.31 +1.3
2,761,568 - Pf1N1B4_2438 0.31 +1.3
2,761,579 + Pf1N1B4_2438 0.33 +0.8
2,761,654 + Pf1N1B4_2438 0.47 -0.4
2,761,654 + Pf1N1B4_2438 0.47 -0.5
2,761,654 + Pf1N1B4_2438 0.47 +0.1
2,761,655 - Pf1N1B4_2438 0.47 +1.6
2,761,655 - Pf1N1B4_2438 0.47 +0.9
2,761,759 + Pf1N1B4_2438 0.67 +0.0
2,761,760 - Pf1N1B4_2438 0.67 +0.5
2,761,760 - Pf1N1B4_2438 0.67 -0.4
2,761,792 + Pf1N1B4_2438 0.73 -0.2
2,761,792 + Pf1N1B4_2438 0.73 -0.6
2,761,792 + Pf1N1B4_2438 0.73 -0.4
2,761,792 + Pf1N1B4_2438 0.73 +1.9
2,761,792 + Pf1N1B4_2438 0.73 -0.9
2,761,793 - Pf1N1B4_2438 0.73 +0.7
2,761,879 + Pf1N1B4_2438 0.89 +0.3
2,761,933 + +0.4
2,761,933 + -0.6
2,761,933 + +0.6
2,761,933 + +0.9
2,761,933 + -0.3
2,761,933 + +0.9
2,761,934 - +1.0
2,761,934 - +1.1
2,762,038 + +1.0
2,762,038 + +2.5
2,762,038 + -0.1
2,762,039 - +1.4
2,762,071 + +1.4
2,762,071 + +1.9
2,762,080 + +1.7
2,762,080 + +1.6
2,762,080 + +4.1
2,762,080 + +1.7
2,762,080 + +2.3
2,762,081 - +0.3
2,762,081 - +1.4
2,762,081 - +2.4
2,762,084 - +1.4
2,762,404 + Pf1N1B4_2439 0.22 +1.1
2,762,404 + Pf1N1B4_2439 0.22 +0.8
2,762,404 + Pf1N1B4_2439 0.22 +1.1
2,762,405 - Pf1N1B4_2439 0.22 +1.1
2,762,405 - Pf1N1B4_2439 0.22 +2.8
2,762,405 - Pf1N1B4_2439 0.22 +1.0
2,762,405 - Pf1N1B4_2439 0.22 +0.7
2,762,684 - Pf1N1B4_2439 0.36 +1.6
2,762,684 - Pf1N1B4_2439 0.36 +2.0
2,762,684 - Pf1N1B4_2439 0.36 +0.9
2,762,686 + Pf1N1B4_2439 0.36 +0.0
2,762,884 - Pf1N1B4_2439 0.45 +0.4
2,762,899 + Pf1N1B4_2439 0.46 +1.0

Or see this region's nucleotide sequence