Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2182

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2180 and Pf1N1B4_2181 are separated by 343 nucleotidesPf1N1B4_2181 and Pf1N1B4_2182 are separated by 125 nucleotidesPf1N1B4_2182 and Pf1N1B4_2183 are separated by 119 nucleotides Pf1N1B4_2180 - DNA-binding protein inhibitor Id-2-related protein, at 2,492,845 to 2,493,090 _2180 Pf1N1B4_2181 - FIG00954215: hypothetical protein, at 2,493,434 to 2,493,718 _2181 Pf1N1B4_2182 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 2,493,844 to 2,494,503 _2182 Pf1N1B4_2183 - Argininosuccinate lyase (EC 4.3.2.1), at 2,494,623 to 2,496,017 _2183 Position (kb) 2493 2494 2495Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2492.924 kb on + strand, within Pf1N1B4_2180at 2493.081 kb on + strandat 2493.090 kb on + strandat 2493.090 kb on + strandat 2493.090 kb on + strandat 2493.090 kb on + strandat 2493.090 kb on + strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.091 kb on - strandat 2493.108 kb on + strandat 2493.108 kb on + strandat 2493.108 kb on + strandat 2493.131 kb on + strandat 2493.169 kb on - strandat 2493.205 kb on - strandat 2493.205 kb on - strandat 2493.246 kb on + strandat 2493.246 kb on + strandat 2493.246 kb on + strandat 2493.246 kb on + strandat 2493.246 kb on + strandat 2493.246 kb on + strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.344 kb on - strandat 2493.382 kb on - strandat 2493.402 kb on + strandat 2493.402 kb on + strandat 2493.402 kb on + strandat 2493.403 kb on - strandat 2493.403 kb on - strandat 2493.403 kb on - strandat 2493.413 kb on + strandat 2493.414 kb on - strandat 2493.414 kb on - strandat 2493.414 kb on - strandat 2493.414 kb on - strandat 2493.435 kb on + strandat 2493.435 kb on + strandat 2493.435 kb on + strandat 2493.436 kb on - strandat 2493.436 kb on - strandat 2493.736 kb on - strandat 2493.749 kb on + strandat 2493.749 kb on + strandat 2493.750 kb on - strandat 2493.750 kb on - strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.799 kb on + strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.800 kb on - strandat 2493.801 kb on + strandat 2493.801 kb on + strandat 2493.838 kb on + strandat 2493.838 kb on + strandat 2493.838 kb on + strandat 2493.838 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.842 kb on + strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.843 kb on - strandat 2493.877 kb on + strandat 2493.877 kb on + strandat 2493.880 kb on + strandat 2493.880 kb on + strandat 2493.880 kb on + strandat 2493.880 kb on + strandat 2493.880 kb on + strandat 2493.881 kb on - strandat 2493.881 kb on - strandat 2493.881 kb on - strandat 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.138 kb on + strand, within Pf1N1B4_2182at 2494.139 kb on - strandat 2494.139 kb on - strand, within Pf1N1B4_2182at 2494.139 kb on - strand, within Pf1N1B4_2182at 2494.139 kb on - strand, within Pf1N1B4_2182at 2494.166 kb on - strand, within Pf1N1B4_2182at 2494.276 kb on + strand, within Pf1N1B4_2182at 2494.276 kb on + strand, within Pf1N1B4_2182at 2494.312 kb on + strand, within Pf1N1B4_2182at 2494.312 kb on + strand, within Pf1N1B4_2182at 2494.313 kb on - strand, within Pf1N1B4_2182at 2494.313 kb on - strand, within Pf1N1B4_2182at 2494.321 kb on + strand, within Pf1N1B4_2182at 2494.322 kb on - strandat 2494.502 kb on - strandat 2494.509 kb on + strandat 2494.570 kb on - strandat 2494.740 kb on + strandat 2494.740 kb on + strandat 2494.740 kb on + strandat 2494.740 kb on + strandat 2494.741 kb on - strandat 2494.741 kb on - strandat 2494.741 kb on - strandat 2494.741 kb on - strandat 2494.741 kb on - strandat 2494.822 kb on + strand, within Pf1N1B4_2183at 2494.823 kb on - strand, within Pf1N1B4_2183at 2494.885 kb on + strand, within Pf1N1B4_2183at 2495.389 kb on + strand, within Pf1N1B4_2183

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,492,924 + Pf1N1B4_2180 0.32 +0.7
2,493,081 + -0.0
2,493,090 + +1.1
2,493,090 + -0.7
2,493,090 + -0.6
2,493,090 + -0.2
2,493,090 + +0.1
2,493,091 - -0.4
2,493,091 - +0.3
2,493,091 - +1.6
2,493,091 - +1.2
2,493,091 - +0.0
2,493,091 - -1.0
2,493,091 - +1.2
2,493,091 - -0.1
2,493,108 + +1.6
2,493,108 + +1.0
2,493,108 + -0.7
2,493,131 + -1.2
2,493,169 - -0.8
2,493,205 - +0.2
2,493,205 - +0.1
2,493,246 + +0.5
2,493,246 + +0.6
2,493,246 + +0.3
2,493,246 + +2.7
2,493,246 + -0.9
2,493,246 + +1.0
2,493,247 - +0.3
2,493,247 - +0.6
2,493,247 - +0.3
2,493,247 - +1.1
2,493,247 - -0.8
2,493,247 - +0.6
2,493,247 - -0.3
2,493,344 - -0.1
2,493,382 - -0.6
2,493,402 + -1.5
2,493,402 + +0.8
2,493,402 + +0.4
2,493,403 - +0.3
2,493,403 - -0.5
2,493,403 - -1.7
2,493,413 + -0.9
2,493,414 - -0.2
2,493,414 - +0.3
2,493,414 - -0.2
2,493,414 - +0.2
2,493,435 + -1.0
2,493,435 + +0.2
2,493,435 + +0.1
2,493,436 - -0.7
2,493,436 - +0.4
2,493,736 - -1.4
2,493,749 + -0.9
2,493,749 + -1.4
2,493,750 - +0.2
2,493,750 - +0.1
2,493,799 + +1.8
2,493,799 + +0.5
2,493,799 + +1.0
2,493,799 + -0.2
2,493,799 + +1.3
2,493,799 + -0.5
2,493,799 + -0.3
2,493,799 + +0.2
2,493,800 - -1.8
2,493,800 - -0.2
2,493,800 - +0.4
2,493,800 - +0.3
2,493,800 - +0.2
2,493,800 - +1.1
2,493,800 - +0.3
2,493,801 + +0.1
2,493,801 + +0.1
2,493,838 + -0.4
2,493,838 + -0.4
2,493,838 + +0.1
2,493,838 + -0.3
2,493,842 + -0.5
2,493,842 + -0.1
2,493,842 + +0.0
2,493,842 + -0.2
2,493,842 + +0.2
2,493,842 + -1.1
2,493,842 + +0.2
2,493,842 + +0.9
2,493,842 + -1.0
2,493,842 + +0.9
2,493,842 + -1.6
2,493,842 + -0.1
2,493,842 + +0.8
2,493,842 + -1.2
2,493,842 + -0.9
2,493,842 + +0.1
2,493,843 - +1.1
2,493,843 - -0.8
2,493,843 - -0.8
2,493,843 - +0.1
2,493,843 - +0.3
2,493,843 - +0.1
2,493,843 - +0.6
2,493,843 - -0.2
2,493,843 - -0.7
2,493,843 - +0.2
2,493,843 - -0.0
2,493,843 - -0.8
2,493,843 - +0.3
2,493,843 - -1.5
2,493,843 - +0.6
2,493,843 - -1.1
2,493,843 - +0.3
2,493,843 - -0.5
2,493,843 - -0.2
2,493,877 + -1.2
2,493,877 + +0.5
2,493,880 + +0.5
2,493,880 + -0.1
2,493,880 + -0.1
2,493,880 + +0.2
2,493,880 + -0.3
2,493,881 - -0.5
2,493,881 - -2.7
2,493,881 - +0.1
2,494,138 + Pf1N1B4_2182 0.45 +0.7
2,494,138 + Pf1N1B4_2182 0.45 -0.1
2,494,138 + Pf1N1B4_2182 0.45 +1.5
2,494,138 + Pf1N1B4_2182 0.45 -0.2
2,494,138 + Pf1N1B4_2182 0.45 -1.0
2,494,138 + Pf1N1B4_2182 0.45 -0.4
2,494,138 + Pf1N1B4_2182 0.45 +1.0
2,494,138 + Pf1N1B4_2182 0.45 -0.2
2,494,139 - +1.3
2,494,139 - Pf1N1B4_2182 0.45 +0.6
2,494,139 - Pf1N1B4_2182 0.45 +0.5
2,494,139 - Pf1N1B4_2182 0.45 +0.1
2,494,166 - Pf1N1B4_2182 0.49 +0.3
2,494,276 + Pf1N1B4_2182 0.65 +0.8
2,494,276 + Pf1N1B4_2182 0.65 -0.1
2,494,312 + Pf1N1B4_2182 0.71 +0.3
2,494,312 + Pf1N1B4_2182 0.71 +0.8
2,494,313 - Pf1N1B4_2182 0.71 -0.2
2,494,313 - Pf1N1B4_2182 0.71 +0.1
2,494,321 + Pf1N1B4_2182 0.72 -0.5
2,494,322 - -0.2
2,494,502 - +0.8
2,494,509 + +0.1
2,494,570 - +0.8
2,494,740 + -1.8
2,494,740 + -1.8
2,494,740 + -1.0
2,494,740 + -1.0
2,494,741 - -0.0
2,494,741 - +0.2
2,494,741 - -4.9
2,494,741 - -1.0
2,494,741 - -1.5
2,494,822 + Pf1N1B4_2183 0.14 -1.5
2,494,823 - Pf1N1B4_2183 0.14 -0.7
2,494,885 + Pf1N1B4_2183 0.19 -1.7
2,495,389 + Pf1N1B4_2183 0.55 -2.1

Or see this region's nucleotide sequence