Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotides Pf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotides Pf1N1B4_2028 and Pf1N1B4_2029 are separated by 264 nucleotides Pf1N1B4_2029 and Pf1N1B4_2030 are separated by 42 nucleotides
Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337
_2026
Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163
_2027
Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257
_2028
Pf1N1B4_2029 - FIG00953722: hypothetical protein, at 2,316,522 to 2,316,773
_2029
Pf1N1B4_2030 - lipoprotein, putative, at 2,316,816 to 2,317,394
_2030
Position (kb)
2315
2316
2317 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2314.331 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.456 kb on - strand at 2314.456 kb on - strand at 2314.484 kb on + strand at 2314.484 kb on + strand at 2314.506 kb on - strand at 2314.534 kb on + strand at 2314.535 kb on - strand at 2314.535 kb on - strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.552 kb on - strand at 2314.552 kb on - strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.587 kb on + strand at 2314.594 kb on + strand at 2315.763 kb on + strand, within Pf1N1B4_2028 at 2316.255 kb on + strand at 2316.255 kb on + strand at 2316.256 kb on - strand at 2316.336 kb on + strand at 2316.337 kb on - strand at 2316.337 kb on - strand at 2316.356 kb on + strand at 2316.356 kb on + strand at 2316.356 kb on + strand at 2316.414 kb on - strand at 2316.422 kb on - strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.478 kb on + strand at 2316.679 kb on - strand, within Pf1N1B4_2029 at 2316.679 kb on - strand, within Pf1N1B4_2029 at 2316.730 kb on + strand, within Pf1N1B4_2029 at 2316.744 kb on + strand, within Pf1N1B4_2029 at 2316.744 kb on + strand, within Pf1N1B4_2029 at 2316.744 kb on + strand, within Pf1N1B4_2029 at 2316.745 kb on - strand, within Pf1N1B4_2029 at 2316.813 kb on - strand at 2316.813 kb on - strand at 2316.813 kb on - strand at 2316.813 kb on - strand at 2316.813 kb on - strand at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.071 kb on + strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030 at 2317.072 kb on - strand, within Pf1N1B4_2030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,314,331 + +0.0 2,314,455 + -0.3 2,314,455 + +0.8 2,314,455 + -0.5 2,314,455 + +0.8 2,314,455 + +0.3 2,314,455 + -0.0 2,314,455 + -2.2 2,314,455 + -0.5 2,314,456 - +0.1 2,314,456 - +1.3 2,314,484 + -0.7 2,314,484 + -0.4 2,314,506 - +0.9 2,314,534 + +0.8 2,314,535 - -1.1 2,314,535 - -0.1 2,314,551 + -0.0 2,314,551 + -1.6 2,314,551 + +0.6 2,314,551 + -0.2 2,314,552 - -2.7 2,314,552 - -2.9 2,314,553 + -0.3 2,314,553 + -0.7 2,314,553 + +1.5 2,314,553 + -1.1 2,314,553 + +1.3 2,314,587 + -0.5 2,314,594 + -1.9 2,315,763 + Pf1N1B4_2028 0.54 -1.2 2,316,255 + -0.8 2,316,255 + +0.3 2,316,256 - +0.7 2,316,336 + +0.3 2,316,337 - -0.4 2,316,337 - -0.2 2,316,356 + +0.3 2,316,356 + +0.8 2,316,356 + -0.5 2,316,414 - +1.0 2,316,422 - -0.3 2,316,478 + +1.0 2,316,478 + -0.5 2,316,478 + +0.2 2,316,478 + +0.0 2,316,478 + -0.6 2,316,478 + +1.0 2,316,478 + -0.9 2,316,478 + +0.9 2,316,478 + -1.0 2,316,478 + +0.3 2,316,478 + +0.3 2,316,679 - Pf1N1B4_2029 0.62 -1.4 2,316,679 - Pf1N1B4_2029 0.62 +0.2 2,316,730 + Pf1N1B4_2029 0.83 -0.4 2,316,744 + Pf1N1B4_2029 0.88 +1.3 2,316,744 + Pf1N1B4_2029 0.88 +0.6 2,316,744 + Pf1N1B4_2029 0.88 +1.2 2,316,745 - Pf1N1B4_2029 0.88 +1.3 2,316,813 - -0.1 2,316,813 - -1.5 2,316,813 - -1.5 2,316,813 - -0.9 2,316,813 - +1.1 2,317,071 + Pf1N1B4_2030 0.44 -0.1 2,317,071 + Pf1N1B4_2030 0.44 +0.3 2,317,071 + Pf1N1B4_2030 0.44 -1.0 2,317,071 + Pf1N1B4_2030 0.44 +0.9 2,317,071 + Pf1N1B4_2030 0.44 +0.0 2,317,071 + Pf1N1B4_2030 0.44 -0.8 2,317,072 - Pf1N1B4_2030 0.44 +0.9 2,317,072 - Pf1N1B4_2030 0.44 -0.2 2,317,072 - Pf1N1B4_2030 0.44 +0.2 2,317,072 - Pf1N1B4_2030 0.44 +0.3 2,317,072 - Pf1N1B4_2030 0.44 +0.7 2,317,072 - Pf1N1B4_2030 0.44 +1.7 2,317,072 - Pf1N1B4_2030 0.44 -1.5
Or see this region's nucleotide sequence