Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1639

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1637 and Pf1N1B4_1638 are separated by 84 nucleotidesPf1N1B4_1638 and Pf1N1B4_1639 are separated by 364 nucleotidesPf1N1B4_1639 and Pf1N1B4_1640 are separated by 552 nucleotides Pf1N1B4_1637 - FIG00954739: hypothetical protein, at 1,880,618 to 1,881,076 _1637 Pf1N1B4_1638 - hypothetical protein, at 1,881,161 to 1,881,487 _1638 Pf1N1B4_1639 - transport permease protein of gamma-aminobutyrate, at 1,881,852 to 1,883,246 _1639 Pf1N1B4_1640 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 1,883,799 to 1,884,572 _1640 Position (kb) 1881 1882 1883 1884Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1881.141 kb on - strandat 1881.163 kb on - strandat 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.252 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.280 kb on - strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.455 kb on - strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.479 kb on - strandat 1881.479 kb on - strandat 1881.532 kb on + strandat 1881.533 kb on - strandat 1881.533 kb on - strandat 1881.567 kb on + strandat 1881.568 kb on - strandat 1881.568 kb on - strandat 1881.568 kb on - strandat 1881.578 kb on + strandat 1881.578 kb on + strandat 1881.644 kb on + strandat 1881.644 kb on + strandat 1881.737 kb on + strandat 1881.765 kb on - strandat 1881.765 kb on - strandat 1881.834 kb on + strandat 1881.834 kb on + strandat 1881.834 kb on + strandat 1881.835 kb on - strandat 1881.900 kb on + strandat 1881.901 kb on - strandat 1881.934 kb on - strandat 1882.008 kb on + strand, within Pf1N1B4_1639at 1882.008 kb on + strand, within Pf1N1B4_1639at 1882.008 kb on + strand, within Pf1N1B4_1639at 1882.008 kb on + strand, within Pf1N1B4_1639at 1882.009 kb on - strand, within Pf1N1B4_1639at 1882.009 kb on - strand, within Pf1N1B4_1639at 1882.009 kb on - strand, within Pf1N1B4_1639at 1882.009 kb on - strand, within Pf1N1B4_1639at 1882.009 kb on - strand, within Pf1N1B4_1639at 1882.009 kb on - strandat 1882.009 kb on - strandat 1882.021 kb on + strandat 1882.022 kb on - strandat 1882.022 kb on - strand, within Pf1N1B4_1639at 1882.076 kb on + strand, within Pf1N1B4_1639at 1882.077 kb on - strand, within Pf1N1B4_1639at 1882.077 kb on - strand, within Pf1N1B4_1639at 1882.091 kb on + strand, within Pf1N1B4_1639at 1882.092 kb on - strand, within Pf1N1B4_1639at 1882.121 kb on - strand, within Pf1N1B4_1639at 1882.168 kb on - strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.186 kb on + strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.187 kb on - strand, within Pf1N1B4_1639at 1882.241 kb on - strand, within Pf1N1B4_1639at 1882.241 kb on - strand, within Pf1N1B4_1639at 1882.328 kb on - strand, within Pf1N1B4_1639at 1882.328 kb on - strand, within Pf1N1B4_1639at 1882.498 kb on + strand, within Pf1N1B4_1639at 1882.498 kb on + strand, within Pf1N1B4_1639at 1882.499 kb on - strand, within Pf1N1B4_1639at 1882.499 kb on - strand, within Pf1N1B4_1639at 1882.613 kb on + strand, within Pf1N1B4_1639at 1882.613 kb on + strand, within Pf1N1B4_1639at 1882.613 kb on + strand, within Pf1N1B4_1639at 1882.614 kb on - strand, within Pf1N1B4_1639at 1882.762 kb on - strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.801 kb on + strand, within Pf1N1B4_1639at 1882.802 kb on - strand, within Pf1N1B4_1639at 1882.802 kb on - strand, within Pf1N1B4_1639at 1882.802 kb on - strand, within Pf1N1B4_1639at 1882.802 kb on - strand, within Pf1N1B4_1639at 1882.952 kb on - strand, within Pf1N1B4_1639at 1882.952 kb on - strandat 1883.002 kb on + strand, within Pf1N1B4_1639at 1883.002 kb on + strand, within Pf1N1B4_1639at 1883.003 kb on - strand, within Pf1N1B4_1639at 1883.247 kb on + strandat 1883.248 kb on - strandat 1883.248 kb on - strandat 1883.253 kb on + strandat 1883.253 kb on + strandat 1883.254 kb on - strandat 1883.254 kb on - strandat 1883.265 kb on + strandat 1883.265 kb on + strandat 1883.265 kb on + strandat 1883.265 kb on + strandat 1883.266 kb on - strandat 1883.266 kb on - strandat 1883.266 kb on - strandat 1883.305 kb on - strandat 1883.331 kb on - strandat 1883.345 kb on - strandat 1883.345 kb on - strandat 1883.345 kb on - strandat 1883.345 kb on - strandat 1883.499 kb on + strandat 1883.499 kb on + strandat 1883.499 kb on + strandat 1883.499 kb on + strandat 1883.500 kb on - strandat 1883.500 kb on - strandat 1883.500 kb on - strandat 1883.500 kb on - strandat 1883.514 kb on + strandat 1883.515 kb on - strandat 1883.515 kb on - strandat 1883.515 kb on - strandat 1883.729 kb on + strandat 1883.730 kb on - strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.734 kb on + strandat 1883.735 kb on - strandat 1883.735 kb on - strandat 1883.735 kb on - strandat 1883.735 kb on - strandat 1883.735 kb on - strandat 1883.735 kb on - strandat 1883.767 kb on - strandat 1883.785 kb on + strandat 1883.785 kb on + strandat 1883.785 kb on + strandat 1883.786 kb on - strandat 1883.786 kb on - strandat 1884.094 kb on + strand, within Pf1N1B4_1640at 1884.095 kb on - strand, within Pf1N1B4_1640at 1884.108 kb on - strand, within Pf1N1B4_1640at 1884.176 kb on + strand, within Pf1N1B4_1640at 1884.176 kb on + strand, within Pf1N1B4_1640at 1884.176 kb on + strandat 1884.176 kb on + strand, within Pf1N1B4_1640at 1884.176 kb on + strand, within Pf1N1B4_1640

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,881,141 - +0.2
1,881,163 - +0.7
1,881,216 + Pf1N1B4_1638 0.17 +2.0
1,881,216 + Pf1N1B4_1638 0.17 +0.4
1,881,216 + Pf1N1B4_1638 0.17 -0.7
1,881,216 + Pf1N1B4_1638 0.17 +0.0
1,881,216 + Pf1N1B4_1638 0.17 +0.7
1,881,216 + Pf1N1B4_1638 0.17 +0.6
1,881,217 - Pf1N1B4_1638 0.17 +0.7
1,881,217 - Pf1N1B4_1638 0.17 -0.9
1,881,217 - Pf1N1B4_1638 0.17 -0.1
1,881,217 - Pf1N1B4_1638 0.17 +0.5
1,881,217 - Pf1N1B4_1638 0.17 -0.5
1,881,217 - Pf1N1B4_1638 0.17 +0.8
1,881,217 - Pf1N1B4_1638 0.17 +0.7
1,881,217 - Pf1N1B4_1638 0.17 +0.4
1,881,217 - Pf1N1B4_1638 0.17 -3.1
1,881,217 - Pf1N1B4_1638 0.17 -0.7
1,881,217 - Pf1N1B4_1638 0.17 -0.7
1,881,252 + Pf1N1B4_1638 0.28 +0.1
1,881,279 + Pf1N1B4_1638 0.36 +0.9
1,881,279 + Pf1N1B4_1638 0.36 +0.3
1,881,279 + Pf1N1B4_1638 0.36 +2.3
1,881,279 + Pf1N1B4_1638 0.36 +0.3
1,881,280 - Pf1N1B4_1638 0.36 -0.1
1,881,291 + Pf1N1B4_1638 0.40 +1.5
1,881,291 + Pf1N1B4_1638 0.40 -0.6
1,881,291 + Pf1N1B4_1638 0.40 +0.9
1,881,291 + Pf1N1B4_1638 0.40 -1.5
1,881,292 - Pf1N1B4_1638 0.40 +0.2
1,881,292 - Pf1N1B4_1638 0.40 +0.1
1,881,292 - Pf1N1B4_1638 0.40 +1.2
1,881,292 - Pf1N1B4_1638 0.40 +0.4
1,881,292 - Pf1N1B4_1638 0.40 -1.3
1,881,295 + Pf1N1B4_1638 0.41 -1.0
1,881,295 + Pf1N1B4_1638 0.41 -0.4
1,881,295 + Pf1N1B4_1638 0.41 +0.1
1,881,295 + Pf1N1B4_1638 0.41 +0.3
1,881,295 + Pf1N1B4_1638 0.41 +1.0
1,881,296 - Pf1N1B4_1638 0.41 -0.5
1,881,296 - Pf1N1B4_1638 0.41 +0.1
1,881,296 - Pf1N1B4_1638 0.41 +0.1
1,881,296 - Pf1N1B4_1638 0.41 +0.1
1,881,296 - Pf1N1B4_1638 0.41 +0.6
1,881,455 - +0.1
1,881,478 + -1.0
1,881,478 + -0.3
1,881,478 + -1.1
1,881,478 + -0.6
1,881,478 + -1.9
1,881,478 + +0.7
1,881,478 + +0.3
1,881,478 + +0.3
1,881,479 - -0.1
1,881,479 - -0.4
1,881,532 + -0.5
1,881,533 - +0.8
1,881,533 - -0.7
1,881,567 + -0.1
1,881,568 - -1.8
1,881,568 - -0.9
1,881,568 - +0.0
1,881,578 + +1.2
1,881,578 + -0.6
1,881,644 + +0.7
1,881,644 + -0.3
1,881,737 + +0.3
1,881,765 - -0.2
1,881,765 - +0.4
1,881,834 + +0.2
1,881,834 + +0.2
1,881,834 + +0.9
1,881,835 - +0.4
1,881,900 + +0.9
1,881,901 - +1.2
1,881,934 - -2.0
1,882,008 + Pf1N1B4_1639 0.11 +1.5
1,882,008 + Pf1N1B4_1639 0.11 +1.6
1,882,008 + Pf1N1B4_1639 0.11 +0.6
1,882,008 + Pf1N1B4_1639 0.11 +0.6
1,882,009 - Pf1N1B4_1639 0.11 +0.8
1,882,009 - Pf1N1B4_1639 0.11 -0.6
1,882,009 - Pf1N1B4_1639 0.11 +2.2
1,882,009 - Pf1N1B4_1639 0.11 +0.5
1,882,009 - Pf1N1B4_1639 0.11 -0.3
1,882,009 - -0.5
1,882,009 - -0.1
1,882,021 + +1.7
1,882,022 - +0.3
1,882,022 - Pf1N1B4_1639 0.12 -0.7
1,882,076 + Pf1N1B4_1639 0.16 +0.3
1,882,077 - Pf1N1B4_1639 0.16 +1.5
1,882,077 - Pf1N1B4_1639 0.16 -1.1
1,882,091 + Pf1N1B4_1639 0.17 +0.8
1,882,092 - Pf1N1B4_1639 0.17 +0.0
1,882,121 - Pf1N1B4_1639 0.19 -0.3
1,882,168 - Pf1N1B4_1639 0.23 +0.6
1,882,186 + Pf1N1B4_1639 0.24 +1.5
1,882,186 + Pf1N1B4_1639 0.24 -0.4
1,882,186 + Pf1N1B4_1639 0.24 +0.6
1,882,186 + Pf1N1B4_1639 0.24 +0.9
1,882,186 + Pf1N1B4_1639 0.24 +0.6
1,882,186 + Pf1N1B4_1639 0.24 +0.1
1,882,187 - Pf1N1B4_1639 0.24 -0.1
1,882,187 - Pf1N1B4_1639 0.24 +1.3
1,882,187 - Pf1N1B4_1639 0.24 +0.7
1,882,187 - Pf1N1B4_1639 0.24 -0.3
1,882,187 - Pf1N1B4_1639 0.24 +0.9
1,882,187 - Pf1N1B4_1639 0.24 +0.6
1,882,187 - Pf1N1B4_1639 0.24 +1.2
1,882,187 - Pf1N1B4_1639 0.24 +0.3
1,882,241 - Pf1N1B4_1639 0.28 +0.5
1,882,241 - Pf1N1B4_1639 0.28 -1.7
1,882,328 - Pf1N1B4_1639 0.34 +0.5
1,882,328 - Pf1N1B4_1639 0.34 +1.7
1,882,498 + Pf1N1B4_1639 0.46 +0.6
1,882,498 + Pf1N1B4_1639 0.46 +0.5
1,882,499 - Pf1N1B4_1639 0.46 +0.2
1,882,499 - Pf1N1B4_1639 0.46 +0.8
1,882,613 + Pf1N1B4_1639 0.55 -0.1
1,882,613 + Pf1N1B4_1639 0.55 -0.0
1,882,613 + Pf1N1B4_1639 0.55 -0.5
1,882,614 - Pf1N1B4_1639 0.55 +0.7
1,882,762 - Pf1N1B4_1639 0.65 +1.8
1,882,801 + Pf1N1B4_1639 0.68 +0.7
1,882,801 + Pf1N1B4_1639 0.68 +0.7
1,882,801 + Pf1N1B4_1639 0.68 +1.3
1,882,801 + Pf1N1B4_1639 0.68 -0.1
1,882,801 + Pf1N1B4_1639 0.68 +0.6
1,882,801 + Pf1N1B4_1639 0.68 -1.0
1,882,802 - Pf1N1B4_1639 0.68 +0.7
1,882,802 - Pf1N1B4_1639 0.68 +1.1
1,882,802 - Pf1N1B4_1639 0.68 +0.8
1,882,802 - Pf1N1B4_1639 0.68 -0.3
1,882,952 - Pf1N1B4_1639 0.79 +0.3
1,882,952 - -1.0
1,883,002 + Pf1N1B4_1639 0.82 +0.6
1,883,002 + Pf1N1B4_1639 0.82 +0.3
1,883,003 - Pf1N1B4_1639 0.83 +0.0
1,883,247 + -0.4
1,883,248 - +0.3
1,883,248 - +0.9
1,883,253 + +0.8
1,883,253 + +1.2
1,883,254 - +0.6
1,883,254 - +2.9
1,883,265 + +1.0
1,883,265 + +2.0
1,883,265 + -0.2
1,883,265 + -0.3
1,883,266 - -3.9
1,883,266 - -2.9
1,883,266 - -2.6
1,883,305 - -2.0
1,883,331 - -3.5
1,883,345 - -4.0
1,883,345 - -0.3
1,883,345 - -3.7
1,883,345 - -4.1
1,883,499 + -0.3
1,883,499 + +0.8
1,883,499 + -0.4
1,883,499 + -0.2
1,883,500 - +0.3
1,883,500 - -2.1
1,883,500 - -0.3
1,883,500 - -1.0
1,883,514 + +1.1
1,883,515 - -0.5
1,883,515 - -3.2
1,883,515 - -2.4
1,883,729 + -1.0
1,883,730 - -1.5
1,883,734 + +0.4
1,883,734 + -0.8
1,883,734 + -0.2
1,883,734 + -0.4
1,883,734 + +0.0
1,883,734 + +0.7
1,883,734 + +0.0
1,883,734 + +0.4
1,883,734 + +0.8
1,883,734 + +1.1
1,883,734 + +0.2
1,883,734 + +0.1
1,883,735 - +0.1
1,883,735 - -0.4
1,883,735 - -1.6
1,883,735 - -0.1
1,883,735 - -0.9
1,883,735 - -1.1
1,883,767 - -1.5
1,883,785 + -0.4
1,883,785 + +0.1
1,883,785 + -1.5
1,883,786 - -1.5
1,883,786 - +0.7
1,884,094 + Pf1N1B4_1640 0.38 +0.4
1,884,095 - Pf1N1B4_1640 0.38 +0.9
1,884,108 - Pf1N1B4_1640 0.40 +1.3
1,884,176 + Pf1N1B4_1640 0.49 -2.1
1,884,176 + Pf1N1B4_1640 0.49 +0.3
1,884,176 + +1.9
1,884,176 + Pf1N1B4_1640 0.49 -1.0
1,884,176 + Pf1N1B4_1640 0.49 +0.1

Or see this region's nucleotide sequence