Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1536 and Pf1N1B4_1537 are separated by 10 nucleotides Pf1N1B4_1537 and Pf1N1B4_1538 are separated by 150 nucleotides Pf1N1B4_1538 and Pf1N1B4_1539 are separated by 31 nucleotides
Pf1N1B4_1536 - DamX, an inner membrane protein involved in bile resistance, at 1,771,504 to 1,773,096
_1536
Pf1N1B4_1537 - 3-dehydroquinate synthase (EC 4.2.3.4), at 1,773,107 to 1,774,207
_1537
Pf1N1B4_1538 - Shikimate kinase I (EC 2.7.1.71), at 1,774,358 to 1,774,849
_1538
Pf1N1B4_1539 - Type IV pilus biogenesis protein PilQ, at 1,774,881 to 1,776,956
_1539
Position (kb)
1773
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1772.305 kb on + strand, within Pf1N1B4_1536 at 1772.305 kb on + strand, within Pf1N1B4_1536 at 1772.305 kb on + strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.306 kb on - strand, within Pf1N1B4_1536 at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.334 kb on + strand at 1772.334 kb on + strand at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.334 kb on + strand, within Pf1N1B4_1536 at 1772.507 kb on + strand, within Pf1N1B4_1536 at 1772.507 kb on + strand, within Pf1N1B4_1536 at 1772.507 kb on + strand, within Pf1N1B4_1536 at 1772.507 kb on + strand, within Pf1N1B4_1536 at 1772.531 kb on + strand, within Pf1N1B4_1536 at 1772.531 kb on + strand, within Pf1N1B4_1536 at 1772.531 kb on + strand, within Pf1N1B4_1536 at 1772.531 kb on + strand, within Pf1N1B4_1536 at 1772.714 kb on + strand, within Pf1N1B4_1536 at 1772.714 kb on + strand, within Pf1N1B4_1536 at 1772.714 kb on + strand, within Pf1N1B4_1536 at 1772.714 kb on + strand, within Pf1N1B4_1536 at 1772.714 kb on + strand, within Pf1N1B4_1536 at 1772.715 kb on - strand, within Pf1N1B4_1536 at 1773.049 kb on + strand at 1773.049 kb on + strand at 1773.049 kb on + strand at 1773.049 kb on + strand at 1773.049 kb on + strand at 1773.050 kb on - strand at 1773.050 kb on - strand at 1773.050 kb on - strand at 1773.050 kb on - strand at 1773.050 kb on - strand at 1773.090 kb on + strand at 1773.090 kb on + strand at 1773.090 kb on + strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.091 kb on - strand at 1773.105 kb on + strand at 1773.105 kb on + strand at 1773.105 kb on + strand at 1773.105 kb on + strand at 1773.105 kb on + strand at 1773.106 kb on - strand at 1773.106 kb on - strand at 1773.106 kb on - strand at 1773.106 kb on - strand at 1773.106 kb on - strand at 1773.106 kb on - strand at 1773.108 kb on + strand at 1773.115 kb on + strand at 1773.115 kb on + strand at 1773.115 kb on + strand at 1773.135 kb on + strand at 1773.158 kb on + strand at 1773.158 kb on + strand at 1773.833 kb on + strand at 1773.833 kb on + strand, within Pf1N1B4_1537 at 1774.252 kb on + strand at 1774.581 kb on + strand, within Pf1N1B4_1538 at 1774.655 kb on + strand, within Pf1N1B4_1538 at 1774.932 kb on + strand at 1774.933 kb on - strand at 1774.990 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.018 kb on + strand at 1775.019 kb on - strand at 1775.022 kb on + strand at 1775.022 kb on + strand at 1775.022 kb on + strand at 1775.022 kb on + strand at 1775.022 kb on + strand at 1775.022 kb on + strand at 1775.039 kb on + strand at 1775.039 kb on + strand at 1775.039 kb on + strand at 1775.039 kb on + strand at 1775.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,772,305 + Pf1N1B4_1536 0.50 -1.0 1,772,305 + Pf1N1B4_1536 0.50 -0.2 1,772,305 + Pf1N1B4_1536 0.50 +0.6 1,772,306 - Pf1N1B4_1536 0.50 -1.1 1,772,306 - Pf1N1B4_1536 0.50 +0.1 1,772,306 - Pf1N1B4_1536 0.50 -0.3 1,772,306 - Pf1N1B4_1536 0.50 -0.3 1,772,306 - Pf1N1B4_1536 0.50 -1.3 1,772,306 - Pf1N1B4_1536 0.50 -0.2 1,772,306 - Pf1N1B4_1536 0.50 -2.3 1,772,306 - Pf1N1B4_1536 0.50 -1.0 1,772,306 - Pf1N1B4_1536 0.50 +0.5 1,772,306 - Pf1N1B4_1536 0.50 -0.4 1,772,306 - Pf1N1B4_1536 0.50 +1.2 1,772,334 + Pf1N1B4_1536 0.52 -0.2 1,772,334 + Pf1N1B4_1536 0.52 -1.7 1,772,334 + +0.3 1,772,334 + -1.0 1,772,334 + Pf1N1B4_1536 0.52 +0.2 1,772,334 + Pf1N1B4_1536 0.52 +0.1 1,772,334 + Pf1N1B4_1536 0.52 -1.6 1,772,334 + Pf1N1B4_1536 0.52 -0.5 1,772,507 + Pf1N1B4_1536 0.63 +0.6 1,772,507 + Pf1N1B4_1536 0.63 -0.4 1,772,507 + Pf1N1B4_1536 0.63 +1.2 1,772,507 + Pf1N1B4_1536 0.63 -0.2 1,772,531 + Pf1N1B4_1536 0.64 +0.2 1,772,531 + Pf1N1B4_1536 0.64 -1.1 1,772,531 + Pf1N1B4_1536 0.64 -0.7 1,772,531 + Pf1N1B4_1536 0.64 -0.2 1,772,714 + Pf1N1B4_1536 0.76 +0.1 1,772,714 + Pf1N1B4_1536 0.76 -0.1 1,772,714 + Pf1N1B4_1536 0.76 -0.7 1,772,714 + Pf1N1B4_1536 0.76 -0.1 1,772,714 + Pf1N1B4_1536 0.76 -0.4 1,772,715 - Pf1N1B4_1536 0.76 +0.1 1,773,049 + +0.9 1,773,049 + +0.1 1,773,049 + -0.4 1,773,049 + +0.7 1,773,049 + -0.3 1,773,050 - +0.7 1,773,050 - +0.2 1,773,050 - +0.1 1,773,050 - +0.0 1,773,050 - -1.1 1,773,090 + -0.7 1,773,090 + +0.3 1,773,090 + -0.8 1,773,091 - +0.3 1,773,091 - -0.7 1,773,091 - +0.1 1,773,091 - +0.3 1,773,091 - +1.3 1,773,091 - +0.7 1,773,091 - +0.3 1,773,105 + +0.4 1,773,105 + +0.5 1,773,105 + -0.9 1,773,105 + +0.9 1,773,105 + -0.7 1,773,106 - -0.3 1,773,106 - +0.3 1,773,106 - +0.2 1,773,106 - -0.4 1,773,106 - +1.0 1,773,106 - -1.2 1,773,108 + -0.0 1,773,115 + +0.4 1,773,115 + -1.2 1,773,115 + +0.7 1,773,135 + +0.4 1,773,158 + -1.7 1,773,158 + -0.8 1,773,833 + +0.9 1,773,833 + Pf1N1B4_1537 0.66 -1.3 1,774,252 + -1.7 1,774,581 + Pf1N1B4_1538 0.45 -1.7 1,774,655 + Pf1N1B4_1538 0.60 -2.6 1,774,932 + -2.3 1,774,933 - +0.1 1,774,990 + +0.9 1,775,018 + -0.5 1,775,018 + -0.7 1,775,018 + -1.0 1,775,018 + -1.8 1,775,018 + -0.8 1,775,018 + -1.0 1,775,018 + -2.2 1,775,018 + -0.5 1,775,018 + -2.0 1,775,018 + -0.7 1,775,018 + +0.8 1,775,018 + +0.6 1,775,019 - +0.3 1,775,022 + -1.3 1,775,022 + -3.3 1,775,022 + -0.9 1,775,022 + +0.6 1,775,022 + +0.6 1,775,022 + -0.7 1,775,039 + -1.1 1,775,039 + -1.6 1,775,039 + -0.7 1,775,039 + -1.7 1,775,040 - -0.2
Or see this region's nucleotide sequence