Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1482

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1481 and Pf1N1B4_1482 are separated by 230 nucleotidesPf1N1B4_1482 and Pf1N1B4_1483 are separated by 365 nucleotides Pf1N1B4_1481 - Protein involved in catabolism of external DNA, at 1,702,617 to 1,703,453 _1481 Pf1N1B4_1482 - hypothetical protein, at 1,703,684 to 1,704,007 _1482 Pf1N1B4_1483 - hypothetical protein, at 1,704,373 to 1,704,534 _1483 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -2 -1 0 1at 1702.757 kb on + strand, within Pf1N1B4_1481at 1702.834 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.315 kb on - strandat 1703.345 kb on - strand, within Pf1N1B4_1481at 1703.345 kb on - strand, within Pf1N1B4_1481at 1703.446 kb on + strandat 1703.446 kb on + strandat 1703.447 kb on - strandat 1703.481 kb on + strandat 1703.481 kb on + strandat 1703.481 kb on + strandat 1703.482 kb on - strandat 1703.482 kb on - strandat 1703.482 kb on - strandat 1703.488 kb on + strandat 1703.489 kb on - strandat 1703.526 kb on - strandat 1703.686 kb on - strandat 1703.873 kb on + strand, within Pf1N1B4_1482at 1703.873 kb on + strand, within Pf1N1B4_1482at 1703.874 kb on - strand, within Pf1N1B4_1482at 1703.874 kb on - strand, within Pf1N1B4_1482at 1703.874 kb on - strand, within Pf1N1B4_1482at 1703.917 kb on + strand, within Pf1N1B4_1482at 1703.918 kb on - strand, within Pf1N1B4_1482at 1703.970 kb on - strand, within Pf1N1B4_1482at 1703.980 kb on - strandat 1704.022 kb on + strandat 1704.022 kb on + strandat 1704.022 kb on + strandat 1704.023 kb on - strandat 1704.027 kb on + strandat 1704.028 kb on - strandat 1704.028 kb on - strandat 1704.100 kb on - strandat 1704.165 kb on - strandat 1704.167 kb on + strandat 1704.168 kb on - strandat 1704.168 kb on - strandat 1704.168 kb on - strandat 1704.168 kb on - strandat 1704.219 kb on + strandat 1704.220 kb on - strandat 1704.353 kb on + strandat 1704.444 kb on - strand, within Pf1N1B4_1483at 1704.482 kb on + strand, within Pf1N1B4_1483at 1704.598 kb on - strandat 1704.604 kb on - strandat 1704.633 kb on - strandat 1704.816 kb on - strandat 1704.816 kb on - strandat 1704.875 kb on - strandat 1704.901 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,702,757 + Pf1N1B4_1481 0.17 -0.9
1,702,834 + Pf1N1B4_1481 0.26 -0.1
1,703,314 + Pf1N1B4_1481 0.83 +0.1
1,703,314 + Pf1N1B4_1481 0.83 -0.3
1,703,314 + Pf1N1B4_1481 0.83 -0.8
1,703,314 + Pf1N1B4_1481 0.83 +0.3
1,703,315 - +1.3
1,703,345 - Pf1N1B4_1481 0.87 +0.3
1,703,345 - Pf1N1B4_1481 0.87 -0.3
1,703,446 + +0.1
1,703,446 + +0.2
1,703,447 - -1.5
1,703,481 + -0.3
1,703,481 + +0.7
1,703,481 + +0.4
1,703,482 - -0.0
1,703,482 - -1.0
1,703,482 - -0.5
1,703,488 + -0.3
1,703,489 - -0.5
1,703,526 - +0.6
1,703,686 - -0.2
1,703,873 + Pf1N1B4_1482 0.58 +1.3
1,703,873 + Pf1N1B4_1482 0.58 +0.2
1,703,874 - Pf1N1B4_1482 0.59 +0.8
1,703,874 - Pf1N1B4_1482 0.59 +1.3
1,703,874 - Pf1N1B4_1482 0.59 -0.3
1,703,917 + Pf1N1B4_1482 0.72 -0.1
1,703,918 - Pf1N1B4_1482 0.72 +0.6
1,703,970 - Pf1N1B4_1482 0.88 +0.2
1,703,980 - -1.7
1,704,022 + +0.8
1,704,022 + -0.3
1,704,022 + +0.3
1,704,023 - +0.2
1,704,027 + +0.5
1,704,028 - -0.9
1,704,028 - -0.0
1,704,100 - -1.2
1,704,165 - +0.8
1,704,167 + +1.1
1,704,168 - +0.4
1,704,168 - +1.0
1,704,168 - +1.0
1,704,168 - +0.4
1,704,219 + +0.4
1,704,220 - -0.3
1,704,353 + +1.3
1,704,444 - Pf1N1B4_1483 0.44 +0.2
1,704,482 + Pf1N1B4_1483 0.67 -1.9
1,704,598 - +1.6
1,704,604 - +1.5
1,704,633 - +0.4
1,704,816 - +0.7
1,704,816 - +0.3
1,704,875 - +0.6
1,704,901 - +0.9

Or see this region's nucleotide sequence