Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1481 and Pf1N1B4_1482 are separated by 230 nucleotides Pf1N1B4_1482 and Pf1N1B4_1483 are separated by 365 nucleotides
Pf1N1B4_1481 - Protein involved in catabolism of external DNA, at 1,702,617 to 1,703,453
_1481
Pf1N1B4_1482 - hypothetical protein, at 1,703,684 to 1,704,007
_1482
Pf1N1B4_1483 - hypothetical protein, at 1,704,373 to 1,704,534
_1483
Position (kb)
1703
1704
1705 Strain fitness (log2 ratio)
-2
-1
0
1 at 1702.757 kb on + strand, within Pf1N1B4_1481 at 1702.834 kb on + strand, within Pf1N1B4_1481 at 1703.314 kb on + strand, within Pf1N1B4_1481 at 1703.314 kb on + strand, within Pf1N1B4_1481 at 1703.314 kb on + strand, within Pf1N1B4_1481 at 1703.314 kb on + strand, within Pf1N1B4_1481 at 1703.315 kb on - strand at 1703.345 kb on - strand, within Pf1N1B4_1481 at 1703.345 kb on - strand, within Pf1N1B4_1481 at 1703.446 kb on + strand at 1703.446 kb on + strand at 1703.447 kb on - strand at 1703.481 kb on + strand at 1703.481 kb on + strand at 1703.481 kb on + strand at 1703.482 kb on - strand at 1703.482 kb on - strand at 1703.482 kb on - strand at 1703.488 kb on + strand at 1703.489 kb on - strand at 1703.526 kb on - strand at 1703.686 kb on - strand at 1703.873 kb on + strand, within Pf1N1B4_1482 at 1703.873 kb on + strand, within Pf1N1B4_1482 at 1703.874 kb on - strand, within Pf1N1B4_1482 at 1703.874 kb on - strand, within Pf1N1B4_1482 at 1703.874 kb on - strand, within Pf1N1B4_1482 at 1703.917 kb on + strand, within Pf1N1B4_1482 at 1703.918 kb on - strand, within Pf1N1B4_1482 at 1703.970 kb on - strand, within Pf1N1B4_1482 at 1703.980 kb on - strand at 1704.022 kb on + strand at 1704.022 kb on + strand at 1704.022 kb on + strand at 1704.023 kb on - strand at 1704.027 kb on + strand at 1704.028 kb on - strand at 1704.028 kb on - strand at 1704.100 kb on - strand at 1704.165 kb on - strand at 1704.167 kb on + strand at 1704.168 kb on - strand at 1704.168 kb on - strand at 1704.168 kb on - strand at 1704.168 kb on - strand at 1704.219 kb on + strand at 1704.220 kb on - strand at 1704.353 kb on + strand at 1704.444 kb on - strand, within Pf1N1B4_1483 at 1704.482 kb on + strand, within Pf1N1B4_1483 at 1704.598 kb on - strand at 1704.604 kb on - strand at 1704.633 kb on - strand at 1704.816 kb on - strand at 1704.816 kb on - strand at 1704.875 kb on - strand at 1704.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,702,757 + Pf1N1B4_1481 0.17 -0.9 1,702,834 + Pf1N1B4_1481 0.26 -0.1 1,703,314 + Pf1N1B4_1481 0.83 +0.1 1,703,314 + Pf1N1B4_1481 0.83 -0.3 1,703,314 + Pf1N1B4_1481 0.83 -0.8 1,703,314 + Pf1N1B4_1481 0.83 +0.3 1,703,315 - +1.3 1,703,345 - Pf1N1B4_1481 0.87 +0.3 1,703,345 - Pf1N1B4_1481 0.87 -0.3 1,703,446 + +0.1 1,703,446 + +0.2 1,703,447 - -1.5 1,703,481 + -0.3 1,703,481 + +0.7 1,703,481 + +0.4 1,703,482 - -0.0 1,703,482 - -1.0 1,703,482 - -0.5 1,703,488 + -0.3 1,703,489 - -0.5 1,703,526 - +0.6 1,703,686 - -0.2 1,703,873 + Pf1N1B4_1482 0.58 +1.3 1,703,873 + Pf1N1B4_1482 0.58 +0.2 1,703,874 - Pf1N1B4_1482 0.59 +0.8 1,703,874 - Pf1N1B4_1482 0.59 +1.3 1,703,874 - Pf1N1B4_1482 0.59 -0.3 1,703,917 + Pf1N1B4_1482 0.72 -0.1 1,703,918 - Pf1N1B4_1482 0.72 +0.6 1,703,970 - Pf1N1B4_1482 0.88 +0.2 1,703,980 - -1.7 1,704,022 + +0.8 1,704,022 + -0.3 1,704,022 + +0.3 1,704,023 - +0.2 1,704,027 + +0.5 1,704,028 - -0.9 1,704,028 - -0.0 1,704,100 - -1.2 1,704,165 - +0.8 1,704,167 + +1.1 1,704,168 - +0.4 1,704,168 - +1.0 1,704,168 - +1.0 1,704,168 - +0.4 1,704,219 + +0.4 1,704,220 - -0.3 1,704,353 + +1.3 1,704,444 - Pf1N1B4_1483 0.44 +0.2 1,704,482 + Pf1N1B4_1483 0.67 -1.9 1,704,598 - +1.6 1,704,604 - +1.5 1,704,633 - +0.4 1,704,816 - +0.7 1,704,816 - +0.3 1,704,875 - +0.6 1,704,901 - +0.9
Or see this region's nucleotide sequence