Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1418 and Pf1N1B4_1419 are separated by 101 nucleotides Pf1N1B4_1419 and Pf1N1B4_1420 are separated by 182 nucleotides Pf1N1B4_1420 and Pf1N1B4_1421 are separated by 107 nucleotides
Pf1N1B4_1418 - Epoxyqueuosine (oQ) reductase QueG, at 1,627,385 to 1,628,449
_1418
Pf1N1B4_1419 - putative membrane protein, at 1,628,551 to 1,629,162
_1419
Pf1N1B4_1420 - 3'-to-5' oligoribonuclease (orn), at 1,629,345 to 1,629,887
_1420
Pf1N1B4_1421 - Ribosome small subunit-stimulated GTPase EngC, at 1,629,995 to 1,631,026
_1421
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.632 kb on - strand, within Pf1N1B4_1418 at 1627.685 kb on + strand at 1627.685 kb on + strand, within Pf1N1B4_1418 at 1627.686 kb on - strand, within Pf1N1B4_1418 at 1627.686 kb on - strand, within Pf1N1B4_1418 at 1627.686 kb on - strand, within Pf1N1B4_1418 at 1627.686 kb on - strand, within Pf1N1B4_1418 at 1627.726 kb on - strand, within Pf1N1B4_1418 at 1627.726 kb on - strand, within Pf1N1B4_1418 at 1627.726 kb on - strand, within Pf1N1B4_1418 at 1627.898 kb on + strand, within Pf1N1B4_1418 at 1627.898 kb on + strand, within Pf1N1B4_1418 at 1627.898 kb on + strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1627.899 kb on - strand, within Pf1N1B4_1418 at 1628.024 kb on + strand, within Pf1N1B4_1418 at 1628.024 kb on + strand, within Pf1N1B4_1418 at 1628.024 kb on + strand, within Pf1N1B4_1418 at 1628.024 kb on + strand, within Pf1N1B4_1418 at 1628.025 kb on - strand, within Pf1N1B4_1418 at 1628.025 kb on - strand, within Pf1N1B4_1418 at 1628.025 kb on - strand, within Pf1N1B4_1418 at 1628.025 kb on - strand, within Pf1N1B4_1418 at 1628.025 kb on - strand, within Pf1N1B4_1418 at 1628.028 kb on + strand, within Pf1N1B4_1418 at 1628.028 kb on + strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.029 kb on - strand, within Pf1N1B4_1418 at 1628.055 kb on - strand, within Pf1N1B4_1418 at 1628.298 kb on - strand, within Pf1N1B4_1418 at 1628.388 kb on - strand at 1628.447 kb on + strand at 1628.448 kb on - strand at 1628.539 kb on - strand at 1628.567 kb on + strand at 1628.568 kb on - strand at 1628.568 kb on - strand at 1628.568 kb on - strand at 1628.663 kb on - strand, within Pf1N1B4_1419 at 1628.672 kb on + strand, within Pf1N1B4_1419 at 1628.672 kb on + strand, within Pf1N1B4_1419 at 1628.672 kb on + strand, within Pf1N1B4_1419 at 1628.673 kb on - strand, within Pf1N1B4_1419 at 1628.673 kb on - strand, within Pf1N1B4_1419 at 1628.673 kb on - strand, within Pf1N1B4_1419 at 1628.673 kb on - strand, within Pf1N1B4_1419 at 1628.673 kb on - strand, within Pf1N1B4_1419 at 1628.687 kb on + strand, within Pf1N1B4_1419 at 1628.721 kb on - strand, within Pf1N1B4_1419 at 1628.737 kb on + strand, within Pf1N1B4_1419 at 1628.737 kb on + strand, within Pf1N1B4_1419 at 1628.738 kb on - strand, within Pf1N1B4_1419 at 1628.819 kb on - strand, within Pf1N1B4_1419 at 1628.975 kb on + strand, within Pf1N1B4_1419 at 1628.976 kb on - strand, within Pf1N1B4_1419 at 1628.976 kb on - strand, within Pf1N1B4_1419 at 1628.976 kb on - strand, within Pf1N1B4_1419 at 1628.976 kb on - strand, within Pf1N1B4_1419 at 1629.146 kb on + strand at 1629.146 kb on + strand at 1629.146 kb on + strand at 1629.147 kb on - strand at 1629.195 kb on - strand at 1629.202 kb on + strand at 1629.203 kb on - strand at 1629.237 kb on - strand at 1629.237 kb on - strand at 1629.274 kb on + strand at 1629.274 kb on + strand at 1629.274 kb on + strand at 1629.280 kb on + strand at 1629.280 kb on + strand at 1629.280 kb on + strand at 1629.280 kb on + strand at 1629.280 kb on + strand at 1629.281 kb on - strand at 1629.281 kb on - strand at 1629.281 kb on - strand at 1629.906 kb on - strand at 1629.906 kb on - strand at 1629.918 kb on + strand at 1629.944 kb on + strand at 1629.944 kb on + strand at 1629.965 kb on + strand at 1629.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,627,632 - Pf1N1B4_1418 0.23 -1.0 1,627,632 - Pf1N1B4_1418 0.23 -1.8 1,627,632 - Pf1N1B4_1418 0.23 -0.7 1,627,632 - Pf1N1B4_1418 0.23 -0.3 1,627,632 - Pf1N1B4_1418 0.23 -0.8 1,627,632 - Pf1N1B4_1418 0.23 +0.1 1,627,685 + +0.3 1,627,685 + Pf1N1B4_1418 0.28 +0.4 1,627,686 - Pf1N1B4_1418 0.28 +0.3 1,627,686 - Pf1N1B4_1418 0.28 -0.5 1,627,686 - Pf1N1B4_1418 0.28 -0.8 1,627,686 - Pf1N1B4_1418 0.28 +1.4 1,627,726 - Pf1N1B4_1418 0.32 -0.5 1,627,726 - Pf1N1B4_1418 0.32 -1.7 1,627,726 - Pf1N1B4_1418 0.32 -1.9 1,627,898 + Pf1N1B4_1418 0.48 -0.0 1,627,898 + Pf1N1B4_1418 0.48 +0.8 1,627,898 + Pf1N1B4_1418 0.48 +0.8 1,627,899 - Pf1N1B4_1418 0.48 -0.3 1,627,899 - Pf1N1B4_1418 0.48 -0.3 1,627,899 - Pf1N1B4_1418 0.48 -0.5 1,627,899 - Pf1N1B4_1418 0.48 -0.5 1,627,899 - Pf1N1B4_1418 0.48 +0.1 1,627,899 - Pf1N1B4_1418 0.48 +0.9 1,627,899 - Pf1N1B4_1418 0.48 +0.3 1,628,024 + Pf1N1B4_1418 0.60 +0.1 1,628,024 + Pf1N1B4_1418 0.60 +0.4 1,628,024 + Pf1N1B4_1418 0.60 -0.3 1,628,024 + Pf1N1B4_1418 0.60 -0.9 1,628,025 - Pf1N1B4_1418 0.60 +0.6 1,628,025 - Pf1N1B4_1418 0.60 -0.6 1,628,025 - Pf1N1B4_1418 0.60 -0.4 1,628,025 - Pf1N1B4_1418 0.60 -0.4 1,628,025 - Pf1N1B4_1418 0.60 +0.9 1,628,028 + Pf1N1B4_1418 0.60 -0.8 1,628,028 + Pf1N1B4_1418 0.60 +1.8 1,628,029 - Pf1N1B4_1418 0.60 -0.1 1,628,029 - Pf1N1B4_1418 0.60 +0.3 1,628,029 - Pf1N1B4_1418 0.60 +0.1 1,628,029 - Pf1N1B4_1418 0.60 -0.7 1,628,029 - Pf1N1B4_1418 0.60 -0.1 1,628,029 - Pf1N1B4_1418 0.60 +0.9 1,628,029 - Pf1N1B4_1418 0.60 +0.3 1,628,029 - Pf1N1B4_1418 0.60 -0.3 1,628,029 - Pf1N1B4_1418 0.60 -0.6 1,628,029 - Pf1N1B4_1418 0.60 -1.8 1,628,029 - Pf1N1B4_1418 0.60 -0.4 1,628,055 - Pf1N1B4_1418 0.63 -0.1 1,628,298 - Pf1N1B4_1418 0.86 -0.5 1,628,388 - -1.7 1,628,447 + +0.4 1,628,448 - -1.5 1,628,539 - -2.8 1,628,567 + +0.3 1,628,568 - +0.1 1,628,568 - +1.3 1,628,568 - +0.0 1,628,663 - Pf1N1B4_1419 0.18 +0.3 1,628,672 + Pf1N1B4_1419 0.20 +0.8 1,628,672 + Pf1N1B4_1419 0.20 -1.2 1,628,672 + Pf1N1B4_1419 0.20 -0.3 1,628,673 - Pf1N1B4_1419 0.20 +1.3 1,628,673 - Pf1N1B4_1419 0.20 +0.6 1,628,673 - Pf1N1B4_1419 0.20 -1.6 1,628,673 - Pf1N1B4_1419 0.20 +0.3 1,628,673 - Pf1N1B4_1419 0.20 +1.1 1,628,687 + Pf1N1B4_1419 0.22 +0.4 1,628,721 - Pf1N1B4_1419 0.28 -0.2 1,628,737 + Pf1N1B4_1419 0.30 +0.7 1,628,737 + Pf1N1B4_1419 0.30 +0.2 1,628,738 - Pf1N1B4_1419 0.31 -0.2 1,628,819 - Pf1N1B4_1419 0.44 -0.7 1,628,975 + Pf1N1B4_1419 0.69 +0.9 1,628,976 - Pf1N1B4_1419 0.69 +0.8 1,628,976 - Pf1N1B4_1419 0.69 -1.0 1,628,976 - Pf1N1B4_1419 0.69 +0.8 1,628,976 - Pf1N1B4_1419 0.69 +0.5 1,629,146 + +0.5 1,629,146 + +0.3 1,629,146 + -0.2 1,629,147 - -0.1 1,629,195 - -0.6 1,629,202 + -0.1 1,629,203 - -0.3 1,629,237 - -0.2 1,629,237 - +0.3 1,629,274 + +0.4 1,629,274 + +0.0 1,629,274 + -0.7 1,629,280 + +0.6 1,629,280 + +0.1 1,629,280 + +0.1 1,629,280 + -0.0 1,629,280 + +0.0 1,629,281 - +0.4 1,629,281 - +1.5 1,629,281 - -0.5 1,629,906 - -0.3 1,629,906 - -0.4 1,629,918 + +0.4 1,629,944 + +0.7 1,629,944 + -0.9 1,629,965 + +0.0 1,629,965 + -0.8
Or see this region's nucleotide sequence