Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04735

Experiment: H2 McCas- cells grown in liquid medium with neomycin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04725 and MMP_RS04730 are separated by 43 nucleotidesMMP_RS04730 and MMP_RS04735 are separated by 75 nucleotidesMMP_RS04735 and MMP_RS04740 are separated by 41 nucleotidesMMP_RS04740 and MMP_RS04745 are separated by 18 nucleotides MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855 _RS04725 MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480 _RS04730 MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750 _RS04735 MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169 _RS04740 MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895 _RS04745 Position (kb) 903 904Strain fitness (log2 ratio) -2 -1 0 1 2 3at 902.557 kb on + strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.643 kb on - strand, within MMP_RS04725at 902.669 kb on - strand, within MMP_RS04725at 902.691 kb on - strand, within MMP_RS04725at 902.692 kb on + strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.742 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.817 kb on - strandat 902.873 kb on - strandat 902.873 kb on - strandat 902.897 kb on - strandat 902.897 kb on - strandat 902.897 kb on - strandat 902.898 kb on + strandat 902.898 kb on + strandat 902.900 kb on - strandat 902.902 kb on - strandat 902.903 kb on + strandat 902.903 kb on + strandat 902.943 kb on - strandat 903.018 kb on + strand, within MMP_RS04730at 903.088 kb on - strand, within MMP_RS04730at 903.094 kb on + strand, within MMP_RS04730at 903.160 kb on + strand, within MMP_RS04730at 903.171 kb on - strand, within MMP_RS04730at 903.171 kb on - strand, within MMP_RS04730at 903.228 kb on + strand, within MMP_RS04730at 903.243 kb on - strand, within MMP_RS04730at 903.244 kb on + strand, within MMP_RS04730at 903.247 kb on - strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.250 kb on + strand, within MMP_RS04730at 903.295 kb on - strand, within MMP_RS04730at 903.301 kb on + strand, within MMP_RS04730at 903.422 kb on + strandat 903.501 kb on - strandat 903.501 kb on - strandat 903.501 kb on - strandat 903.502 kb on + strandat 903.502 kb on + strandat 903.502 kb on + strandat 903.542 kb on - strandat 903.542 kb on - strandat 903.578 kb on + strand, within MMP_RS04735at 903.632 kb on + strand, within MMP_RS04735at 903.661 kb on - strand, within MMP_RS04735at 903.661 kb on - strand, within MMP_RS04735at 903.662 kb on + strand, within MMP_RS04735at 903.793 kb on - strandat 903.794 kb on + strandat 903.804 kb on - strandat 903.909 kb on - strand, within MMP_RS04740at 903.919 kb on + strand, within MMP_RS04740at 903.954 kb on + strand, within MMP_RS04740at 903.958 kb on + strand, within MMP_RS04740at 903.960 kb on + strand, within MMP_RS04740at 904.189 kb on - strandat 904.189 kb on - strandat 904.194 kb on + strandat 904.194 kb on + strandat 904.194 kb on + strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.195 kb on - strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.196 kb on + strandat 904.199 kb on - strandat 904.200 kb on + strandat 904.392 kb on - strand, within MMP_RS04745at 904.633 kb on + strand, within MMP_RS04745at 904.635 kb on - strand, within MMP_RS04745at 904.635 kb on - strand, within MMP_RS04745at 904.636 kb on + strand, within MMP_RS04745at 904.653 kb on - strand, within MMP_RS04745at 904.653 kb on - strand, within MMP_RS04745at 904.653 kb on - strand, within MMP_RS04745at 904.654 kb on + strand, within MMP_RS04745at 904.671 kb on - strand, within MMP_RS04745at 904.672 kb on + strand, within MMP_RS04745at 904.674 kb on - strand, within MMP_RS04745at 904.691 kb on + strand, within MMP_RS04745at 904.734 kb on - strand, within MMP_RS04745at 904.734 kb on - strand, within MMP_RS04745at 904.735 kb on + strand, within MMP_RS04745

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas- cells grown in liquid medium with neomycin
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902,557 + MMP_RS04725 0.30 -0.3
902,575 - MMP_RS04725 0.34 -1.1
902,575 - MMP_RS04725 0.34 +0.6
902,575 - MMP_RS04725 0.34 +0.2
902,643 - MMP_RS04725 0.50 +0.6
902,669 - MMP_RS04725 0.56 -0.0
902,691 - MMP_RS04725 0.62 -0.6
902,692 + MMP_RS04725 0.62 -0.2
902,696 - MMP_RS04725 0.63 +0.1
902,696 - MMP_RS04725 0.63 -0.0
902,696 - MMP_RS04725 0.63 -1.2
902,742 + MMP_RS04725 0.73 +0.6
902,758 + MMP_RS04725 0.77 +1.1
902,758 + MMP_RS04725 0.77 +0.0
902,817 - +0.3
902,873 - -0.9
902,873 - +0.5
902,897 - +0.0
902,897 - +3.5
902,897 - +0.1
902,898 + +0.8
902,898 + +0.9
902,900 - -0.5
902,902 - +0.4
902,903 + +0.3
902,903 + +0.5
902,943 - -0.3
903,018 + MMP_RS04730 0.20 -0.7
903,088 - MMP_RS04730 0.32 -0.2
903,094 + MMP_RS04730 0.34 +1.0
903,160 + MMP_RS04730 0.45 -1.2
903,171 - MMP_RS04730 0.47 -0.5
903,171 - MMP_RS04730 0.47 +1.6
903,228 + MMP_RS04730 0.57 -0.2
903,243 - MMP_RS04730 0.59 -0.3
903,244 + MMP_RS04730 0.59 +1.4
903,247 - MMP_RS04730 0.60 +0.7
903,248 + MMP_RS04730 0.60 -0.8
903,248 + MMP_RS04730 0.60 +0.0
903,248 + MMP_RS04730 0.60 -2.3
903,248 + MMP_RS04730 0.60 -0.5
903,250 + MMP_RS04730 0.60 +1.1
903,295 - MMP_RS04730 0.68 -0.4
903,301 + MMP_RS04730 0.69 +0.3
903,422 + +0.7
903,501 - -0.1
903,501 - -0.4
903,501 - -0.5
903,502 + -0.4
903,502 + +0.2
903,502 + +0.7
903,542 - +0.3
903,542 - +0.4
903,578 + MMP_RS04735 0.11 +0.1
903,632 + MMP_RS04735 0.39 +0.2
903,661 - MMP_RS04735 0.54 -0.5
903,661 - MMP_RS04735 0.54 -0.2
903,662 + MMP_RS04735 0.54 -0.8
903,793 - +0.3
903,794 + +0.5
903,804 - -0.2
903,909 - MMP_RS04740 0.31 +2.0
903,919 + MMP_RS04740 0.34 +0.1
903,954 + MMP_RS04740 0.43 +0.2
903,958 + MMP_RS04740 0.44 +0.3
903,960 + MMP_RS04740 0.44 +1.6
904,189 - +0.3
904,189 - +0.1
904,194 + +0.9
904,194 + +0.3
904,194 + +0.6
904,195 - -1.7
904,195 - +0.1
904,195 - +0.2
904,195 - -0.0
904,195 - +0.6
904,195 - -1.0
904,195 - -0.2
904,195 - +0.1
904,195 - -0.7
904,195 - +1.1
904,195 - +1.6
904,196 + +0.6
904,196 + +1.5
904,196 + +0.4
904,196 + +0.8
904,196 + -1.1
904,196 + -0.9
904,196 + +0.3
904,196 + -0.6
904,196 + +0.3
904,199 - +0.4
904,200 + -0.3
904,392 - MMP_RS04745 0.29 -1.8
904,633 + MMP_RS04745 0.63 +0.3
904,635 - MMP_RS04745 0.63 -0.2
904,635 - MMP_RS04745 0.63 +0.2
904,636 + MMP_RS04745 0.63 +0.2
904,653 - MMP_RS04745 0.66 -0.0
904,653 - MMP_RS04745 0.66 -0.4
904,653 - MMP_RS04745 0.66 +0.5
904,654 + MMP_RS04745 0.66 +0.8
904,671 - MMP_RS04745 0.68 +1.1
904,672 + MMP_RS04745 0.68 -0.5
904,674 - MMP_RS04745 0.69 +0.7
904,691 + MMP_RS04745 0.71 +0.4
904,734 - MMP_RS04745 0.77 -0.6
904,734 - MMP_RS04745 0.77 -0.0
904,735 + MMP_RS04745 0.77 +1.3

Or see this region's nucleotide sequence