Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04675

Experiment: H2 McCas- cells grown in liquid medium with neomycin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04665 and MMP_RS04670 are separated by 301 nucleotidesMMP_RS04670 and MMP_RS04675 are separated by 9 nucleotidesMMP_RS04675 and MMP_RS04680 are separated by 29 nucleotides MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625 _RS04665 MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586 _RS04670 MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249 _RS04675 MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316 _RS04680 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.650 kb on + strandat 894.665 kb on + strandat 894.665 kb on + strandat 894.666 kb on - strandat 894.680 kb on - strandat 894.681 kb on + strandat 894.727 kb on + strandat 894.757 kb on - strandat 894.757 kb on - strandat 894.758 kb on + strandat 894.762 kb on + strandat 894.804 kb on - strandat 894.805 kb on + strandat 894.809 kb on - strandat 894.810 kb on + strandat 894.892 kb on - strandat 894.903 kb on - strandat 894.906 kb on - strandat 894.911 kb on - strandat 894.911 kb on - strandat 894.922 kb on - strandat 894.988 kb on - strandat 895.000 kb on + strand, within MMP_RS04670at 895.002 kb on + strand, within MMP_RS04670at 895.006 kb on - strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.060 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.094 kb on - strand, within MMP_RS04670at 895.130 kb on - strand, within MMP_RS04670at 895.186 kb on - strand, within MMP_RS04670at 895.232 kb on - strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.235 kb on + strand, within MMP_RS04670at 895.417 kb on + strand, within MMP_RS04670at 895.546 kb on + strandat 895.578 kb on + strandat 895.625 kb on - strandat 895.644 kb on + strandat 895.649 kb on + strandat 895.679 kb on + strand, within MMP_RS04675at 895.685 kb on + strand, within MMP_RS04675at 895.757 kb on - strand, within MMP_RS04675at 895.761 kb on + strand, within MMP_RS04675at 895.777 kb on - strand, within MMP_RS04675at 895.817 kb on - strand, within MMP_RS04675at 895.827 kb on - strand, within MMP_RS04675at 895.869 kb on + strand, within MMP_RS04675at 895.906 kb on - strand, within MMP_RS04675at 895.907 kb on + strand, within MMP_RS04675at 895.909 kb on - strand, within MMP_RS04675at 895.995 kb on - strand, within MMP_RS04675at 896.017 kb on + strand, within MMP_RS04675at 896.062 kb on - strand, within MMP_RS04675at 896.062 kb on - strand, within MMP_RS04675at 896.212 kb on - strandat 896.229 kb on - strandat 896.231 kb on - strandat 896.234 kb on - strandat 896.234 kb on - strandat 896.234 kb on - strandat 896.248 kb on + strandat 896.288 kb on - strandat 896.288 kb on - strandat 896.320 kb on - strandat 896.324 kb on - strandat 896.324 kb on - strandat 896.340 kb on + strandat 896.414 kb on + strandat 896.504 kb on + strandat 896.575 kb on + strandat 897.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas- cells grown in liquid medium with neomycin
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894,649 - -0.2
894,649 - +4.5
894,649 - +1.0
894,649 - +1.0
894,650 + -0.0
894,665 + -0.3
894,665 + -0.2
894,666 - +1.0
894,680 - +0.2
894,681 + +0.2
894,727 + +1.2
894,757 - +0.9
894,757 - +1.0
894,758 + -0.8
894,762 + -0.1
894,804 - +0.3
894,805 + +0.2
894,809 - -0.1
894,810 + +0.5
894,892 - -1.8
894,903 - -0.8
894,906 - -0.6
894,911 - -1.9
894,911 - +2.3
894,922 - +0.4
894,988 - +0.9
895,000 + MMP_RS04670 0.11 +0.9
895,002 + MMP_RS04670 0.11 -0.1
895,006 - MMP_RS04670 0.12 -0.4
895,007 + MMP_RS04670 0.12 +1.3
895,007 + MMP_RS04670 0.12 -0.4
895,060 + MMP_RS04670 0.20 +0.6
895,067 + MMP_RS04670 0.21 -0.8
895,067 + MMP_RS04670 0.21 -0.4
895,094 - MMP_RS04670 0.25 +0.4
895,130 - MMP_RS04670 0.31 -1.6
895,186 - MMP_RS04670 0.39 +0.5
895,232 - MMP_RS04670 0.46 -0.5
895,233 + MMP_RS04670 0.46 +0.1
895,233 + MMP_RS04670 0.46 -0.8
895,235 + MMP_RS04670 0.47 +0.9
895,417 + MMP_RS04670 0.74 -1.0
895,546 + +0.0
895,578 + -0.3
895,625 - -1.9
895,644 + +0.9
895,649 + -0.3
895,679 + MMP_RS04675 0.13 -0.9
895,685 + MMP_RS04675 0.14 +0.9
895,757 - MMP_RS04675 0.25 +0.3
895,761 + MMP_RS04675 0.25 -0.6
895,777 - MMP_RS04675 0.28 -1.4
895,817 - MMP_RS04675 0.34 +0.1
895,827 - MMP_RS04675 0.35 +1.5
895,869 + MMP_RS04675 0.42 -1.2
895,906 - MMP_RS04675 0.47 -0.9
895,907 + MMP_RS04675 0.48 +0.1
895,909 - MMP_RS04675 0.48 -0.3
895,995 - MMP_RS04675 0.61 -0.1
896,017 + MMP_RS04675 0.64 -2.1
896,062 - MMP_RS04675 0.71 +0.9
896,062 - MMP_RS04675 0.71 -0.3
896,212 - +0.2
896,229 - -0.2
896,231 - +0.2
896,234 - -0.4
896,234 - -0.4
896,234 - +0.7
896,248 + -0.8
896,288 - -1.9
896,288 - -0.2
896,320 - +1.2
896,324 - -0.5
896,324 - -1.2
896,340 + -1.0
896,414 + +0.5
896,504 + +0.5
896,575 + +2.5
897,237 - +2.5

Or see this region's nucleotide sequence