Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04360

Experiment: H2 McCas- cells grown in liquid medium with neomycin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04350 and MMP_RS04355 are separated by 14 nucleotidesMMP_RS04355 and MMP_RS04360 are separated by 130 nucleotidesMMP_RS04360 and MMP_RS04365 are separated by 28 nucleotidesMMP_RS04365 and MMP_RS04370 are separated by 11 nucleotides MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368 _RS04350 MMP_RS04355: MMP_RS04355 - ribonuclease H family protein, at 832,383 to 832,988 _RS04355 MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310 _RS04360 MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007 _RS04365 MMP_RS04370: MMP_RS04370 - hypothetical protein, at 834,019 to 834,489 _RS04370 Position (kb) 833 834Strain fitness (log2 ratio) -2 -1 0 1 2at 832.175 kb on - strand, within MMP_RS04350at 832.204 kb on - strand, within MMP_RS04350at 832.208 kb on + strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.220 kb on + strand, within MMP_RS04350at 832.234 kb on + strand, within MMP_RS04350at 832.290 kb on - strandat 832.291 kb on + strandat 832.367 kb on + strandat 832.386 kb on - strandat 832.424 kb on - strandat 832.466 kb on - strand, within MMP_RS04355at 832.483 kb on - strand, within MMP_RS04355at 832.484 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.503 kb on + strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.509 kb on - strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.511 kb on - strand, within MMP_RS04355at 832.544 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.577 kb on + strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.695 kb on + strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.938 kb on + strandat 832.940 kb on - strandat 832.945 kb on + strandat 832.945 kb on + strandat 832.975 kb on - strandat 832.975 kb on - strandat 832.977 kb on - strandat 832.977 kb on - strandat 832.978 kb on + strandat 832.983 kb on + strandat 833.004 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.019 kb on + strandat 833.020 kb on - strandat 833.021 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.027 kb on + strandat 833.055 kb on + strandat 833.103 kb on + strandat 833.178 kb on + strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.308 kb on - strandat 833.415 kb on - strand, within MMP_RS04365at 833.416 kb on + strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.448 kb on + strand, within MMP_RS04365at 833.461 kb on - strand, within MMP_RS04365at 833.540 kb on - strand, within MMP_RS04365at 833.542 kb on - strand, within MMP_RS04365at 833.557 kb on + strand, within MMP_RS04365at 833.565 kb on + strand, within MMP_RS04365at 833.568 kb on - strand, within MMP_RS04365at 833.579 kb on - strand, within MMP_RS04365at 833.582 kb on + strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.593 kb on + strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.617 kb on + strand, within MMP_RS04365at 833.645 kb on - strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.737 kb on - strand, within MMP_RS04365at 833.842 kb on + strand, within MMP_RS04365at 833.875 kb on - strand, within MMP_RS04365at 833.886 kb on - strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.910 kb on - strand, within MMP_RS04365at 834.005 kb on - strandat 834.020 kb on - strandat 834.028 kb on - strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.031 kb on + strandat 834.033 kb on - strandat 834.101 kb on - strand, within MMP_RS04370at 834.101 kb on - strand, within MMP_RS04370at 834.110 kb on + strand, within MMP_RS04370at 834.130 kb on - strand, within MMP_RS04370at 834.130 kb on - strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.132 kb on - strand, within MMP_RS04370at 834.132 kb on - strand, within MMP_RS04370at 834.133 kb on + strand, within MMP_RS04370at 834.133 kb on + strand, within MMP_RS04370at 834.150 kb on - strand, within MMP_RS04370at 834.160 kb on - strand, within MMP_RS04370at 834.160 kb on - strand, within MMP_RS04370at 834.161 kb on + strand, within MMP_RS04370at 834.161 kb on + strand, within MMP_RS04370at 834.166 kb on + strand, within MMP_RS04370at 834.166 kb on + strand, within MMP_RS04370at 834.168 kb on + strand, within MMP_RS04370at 834.186 kb on - strand, within MMP_RS04370at 834.187 kb on + strand, within MMP_RS04370at 834.212 kb on - strand, within MMP_RS04370at 834.264 kb on - strand, within MMP_RS04370at 834.264 kb on - strand, within MMP_RS04370

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas- cells grown in liquid medium with neomycin
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832,175 - MMP_RS04350 0.83 +1.1
832,204 - MMP_RS04350 0.85 +0.7
832,208 + MMP_RS04350 0.86 -0.3
832,214 - MMP_RS04350 0.86 -0.1
832,214 - MMP_RS04350 0.86 +0.4
832,220 + MMP_RS04350 0.87 -0.5
832,234 + MMP_RS04350 0.88 +0.2
832,290 - +0.3
832,291 + -0.5
832,367 + -1.5
832,386 - -1.7
832,424 - +0.2
832,466 - MMP_RS04355 0.14 +0.9
832,483 - MMP_RS04355 0.17 +0.6
832,484 + MMP_RS04355 0.17 +0.9
832,489 + MMP_RS04355 0.17 +1.1
832,489 + MMP_RS04355 0.17 -0.3
832,501 + MMP_RS04355 0.19 +0.4
832,501 + MMP_RS04355 0.19 +0.2
832,503 + MMP_RS04355 0.20 -0.2
832,504 - MMP_RS04355 0.20 +0.3
832,504 - MMP_RS04355 0.20 -0.9
832,504 - MMP_RS04355 0.20 +0.5
832,505 + MMP_RS04355 0.20 -0.2
832,505 + MMP_RS04355 0.20 +0.9
832,509 - MMP_RS04355 0.21 +0.2
832,510 + MMP_RS04355 0.21 -0.3
832,510 + MMP_RS04355 0.21 -0.5
832,511 - MMP_RS04355 0.21 +1.3
832,544 - MMP_RS04355 0.27 +1.1
832,567 - MMP_RS04355 0.30 -0.5
832,567 - MMP_RS04355 0.30 +1.8
832,568 + MMP_RS04355 0.31 -1.2
832,568 + MMP_RS04355 0.31 +0.2
832,576 - MMP_RS04355 0.32 -0.2
832,576 - MMP_RS04355 0.32 +1.1
832,576 - MMP_RS04355 0.32 -0.2
832,576 - MMP_RS04355 0.32 -0.2
832,577 + MMP_RS04355 0.32 -0.2
832,578 - MMP_RS04355 0.32 +1.8
832,578 - MMP_RS04355 0.32 +0.7
832,578 - MMP_RS04355 0.32 -0.2
832,578 - MMP_RS04355 0.32 +0.0
832,695 + MMP_RS04355 0.51 -0.7
832,788 - MMP_RS04355 0.67 -0.2
832,788 - MMP_RS04355 0.67 -0.0
832,938 + -1.0
832,940 - -0.4
832,945 + -0.2
832,945 + +1.2
832,975 - -1.0
832,975 - -0.9
832,977 - +0.6
832,977 - -0.0
832,978 + -0.5
832,983 + +0.4
833,004 - -0.3
833,018 - -0.6
833,018 - +1.1
833,018 - +0.8
833,018 - -0.1
833,019 + -2.2
833,020 - -0.1
833,021 + +0.8
833,023 + +0.5
833,023 + -0.6
833,023 + -0.3
833,027 + +0.7
833,055 + -0.4
833,103 + -0.7
833,178 + MMP_RS04360 0.31 -0.1
833,216 - MMP_RS04360 0.51 -0.8
833,216 - MMP_RS04360 0.51 -0.5
833,308 - +0.8
833,415 - MMP_RS04365 0.11 +0.6
833,416 + MMP_RS04365 0.12 +0.0
833,447 - MMP_RS04365 0.16 -0.7
833,447 - MMP_RS04365 0.16 +0.0
833,447 - MMP_RS04365 0.16 +2.1
833,448 + MMP_RS04365 0.16 -2.5
833,461 - MMP_RS04365 0.18 -0.1
833,540 - MMP_RS04365 0.30 +0.3
833,542 - MMP_RS04365 0.30 +0.1
833,557 + MMP_RS04365 0.33 +0.3
833,565 + MMP_RS04365 0.34 -0.7
833,568 - MMP_RS04365 0.34 -0.2
833,579 - MMP_RS04365 0.36 -0.5
833,582 + MMP_RS04365 0.36 +0.5
833,592 - MMP_RS04365 0.38 +0.5
833,592 - MMP_RS04365 0.38 +0.7
833,593 + MMP_RS04365 0.38 +0.5
833,616 - MMP_RS04365 0.41 +0.4
833,616 - MMP_RS04365 0.41 +1.0
833,617 + MMP_RS04365 0.42 +0.0
833,645 - MMP_RS04365 0.46 +0.2
833,646 + MMP_RS04365 0.46 -1.3
833,646 + MMP_RS04365 0.46 -0.2
833,737 - MMP_RS04365 0.59 +0.1
833,842 + MMP_RS04365 0.75 -0.4
833,875 - MMP_RS04365 0.80 -0.7
833,886 - MMP_RS04365 0.82 +0.6
833,887 + MMP_RS04365 0.82 -0.4
833,887 + MMP_RS04365 0.82 +0.7
833,887 + MMP_RS04365 0.82 +0.9
833,910 - MMP_RS04365 0.85 +0.4
834,005 - +0.2
834,020 - -0.1
834,028 - +1.3
834,029 + -0.4
834,029 + +0.8
834,029 + +0.3
834,029 + -1.7
834,029 + +0.0
834,031 + +0.8
834,033 - -0.3
834,101 - MMP_RS04370 0.17 +1.4
834,101 - MMP_RS04370 0.17 -0.3
834,110 + MMP_RS04370 0.19 -0.1
834,130 - MMP_RS04370 0.24 -0.7
834,130 - MMP_RS04370 0.24 +0.7
834,131 + MMP_RS04370 0.24 +1.1
834,131 + MMP_RS04370 0.24 -0.4
834,131 + MMP_RS04370 0.24 -0.2
834,132 - MMP_RS04370 0.24 +0.8
834,132 - MMP_RS04370 0.24 +0.0
834,133 + MMP_RS04370 0.24 -0.1
834,133 + MMP_RS04370 0.24 -0.1
834,150 - MMP_RS04370 0.28 -0.2
834,160 - MMP_RS04370 0.30 -0.1
834,160 - MMP_RS04370 0.30 -0.2
834,161 + MMP_RS04370 0.30 +0.6
834,161 + MMP_RS04370 0.30 -0.5
834,166 + MMP_RS04370 0.31 +0.2
834,166 + MMP_RS04370 0.31 -1.1
834,168 + MMP_RS04370 0.32 +0.0
834,186 - MMP_RS04370 0.35 +0.2
834,187 + MMP_RS04370 0.36 +0.9
834,212 - MMP_RS04370 0.41 +0.5
834,264 - MMP_RS04370 0.52 -0.8
834,264 - MMP_RS04370 0.52 -0.7

Or see this region's nucleotide sequence