Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03840

Experiment: H2 McCas- cells grown in liquid medium with neomycin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03835 and MMP_RS03840 are separated by 136 nucleotidesMMP_RS03840 and MMP_RS03845 are separated by 74 nucleotides MMP_RS03835: MMP_RS03835 - MATE family efflux transporter, at 725,998 to 727,350 _RS03835 MMP_RS03840: MMP_RS03840 - hypothetical protein, at 727,487 to 727,804 _RS03840 MMP_RS03845: MMP_RS03845 - DNA adenine methylase, at 727,879 to 728,799 _RS03845 Position (kb) 727 728Strain fitness (log2 ratio) -2 -1 0 1 2 3at 726.494 kb on - strand, within MMP_RS03835at 726.513 kb on + strand, within MMP_RS03835at 726.719 kb on + strand, within MMP_RS03835at 726.725 kb on + strand, within MMP_RS03835at 726.956 kb on - strand, within MMP_RS03835at 726.957 kb on + strand, within MMP_RS03835at 726.985 kb on + strand, within MMP_RS03835at 727.027 kb on + strand, within MMP_RS03835at 727.045 kb on - strand, within MMP_RS03835at 727.045 kb on - strand, within MMP_RS03835at 727.052 kb on - strand, within MMP_RS03835at 727.052 kb on - strand, within MMP_RS03835at 727.052 kb on - strand, within MMP_RS03835at 727.053 kb on + strand, within MMP_RS03835at 727.053 kb on + strand, within MMP_RS03835at 727.058 kb on + strand, within MMP_RS03835at 727.070 kb on + strand, within MMP_RS03835at 727.120 kb on - strand, within MMP_RS03835at 727.147 kb on + strand, within MMP_RS03835at 727.161 kb on - strand, within MMP_RS03835at 727.234 kb on - strandat 727.263 kb on - strandat 727.266 kb on - strandat 727.314 kb on - strandat 727.314 kb on - strandat 727.315 kb on + strandat 727.350 kb on - strandat 727.382 kb on + strandat 727.391 kb on - strandat 727.429 kb on - strandat 727.429 kb on - strandat 727.429 kb on - strandat 727.430 kb on + strandat 727.431 kb on - strandat 727.431 kb on - strandat 727.431 kb on - strandat 727.431 kb on - strandat 727.431 kb on - strandat 727.432 kb on + strandat 727.432 kb on + strandat 727.432 kb on + strandat 727.433 kb on - strandat 727.433 kb on - strandat 727.433 kb on - strandat 727.433 kb on - strandat 727.433 kb on - strandat 727.434 kb on + strandat 727.434 kb on + strandat 727.434 kb on + strandat 727.434 kb on + strandat 727.468 kb on - strandat 727.469 kb on + strandat 727.469 kb on + strandat 727.469 kb on + strandat 727.484 kb on - strandat 727.485 kb on + strandat 727.485 kb on + strandat 727.485 kb on + strandat 727.485 kb on + strandat 727.486 kb on - strandat 727.486 kb on - strandat 727.486 kb on - strandat 727.497 kb on + strandat 727.528 kb on + strand, within MMP_RS03840at 727.564 kb on - strand, within MMP_RS03840at 727.656 kb on - strand, within MMP_RS03840at 727.781 kb on + strandat 727.782 kb on - strandat 727.810 kb on - strandat 727.848 kb on + strandat 727.873 kb on - strandat 727.878 kb on - strandat 727.879 kb on + strandat 728.024 kb on + strand, within MMP_RS03845at 728.075 kb on - strand, within MMP_RS03845at 728.198 kb on + strand, within MMP_RS03845at 728.219 kb on + strand, within MMP_RS03845at 728.323 kb on + strand, within MMP_RS03845at 728.382 kb on + strand, within MMP_RS03845at 728.472 kb on + strand, within MMP_RS03845at 728.583 kb on + strand, within MMP_RS03845at 728.602 kb on + strand, within MMP_RS03845at 728.626 kb on - strand, within MMP_RS03845at 728.627 kb on + strand, within MMP_RS03845at 728.627 kb on + strand, within MMP_RS03845at 728.640 kb on - strand, within MMP_RS03845at 728.641 kb on + strand, within MMP_RS03845at 728.658 kb on - strand, within MMP_RS03845at 728.704 kb on + strand, within MMP_RS03845at 728.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas- cells grown in liquid medium with neomycin
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726,494 - MMP_RS03835 0.37 -1.9
726,513 + MMP_RS03835 0.38 +0.7
726,719 + MMP_RS03835 0.53 -0.8
726,725 + MMP_RS03835 0.54 +0.5
726,956 - MMP_RS03835 0.71 +0.4
726,957 + MMP_RS03835 0.71 +0.5
726,985 + MMP_RS03835 0.73 +0.9
727,027 + MMP_RS03835 0.76 +0.2
727,045 - MMP_RS03835 0.77 +0.7
727,045 - MMP_RS03835 0.77 +0.3
727,052 - MMP_RS03835 0.78 +3.5
727,052 - MMP_RS03835 0.78 -0.2
727,052 - MMP_RS03835 0.78 +0.6
727,053 + MMP_RS03835 0.78 -1.0
727,053 + MMP_RS03835 0.78 -0.9
727,058 + MMP_RS03835 0.78 -0.9
727,070 + MMP_RS03835 0.79 +0.2
727,120 - MMP_RS03835 0.83 -0.8
727,147 + MMP_RS03835 0.85 -0.5
727,161 - MMP_RS03835 0.86 -2.1
727,234 - -1.1
727,263 - +0.2
727,266 - +0.1
727,314 - -2.0
727,314 - +0.7
727,315 + +1.7
727,350 - +2.8
727,382 + -0.6
727,391 - -1.1
727,429 - +0.3
727,429 - +1.0
727,429 - -0.1
727,430 + -0.1
727,431 - +1.0
727,431 - +0.0
727,431 - -1.5
727,431 - +0.5
727,431 - +0.2
727,432 + +0.7
727,432 + +0.2
727,432 + +0.1
727,433 - +0.1
727,433 - -1.1
727,433 - -0.5
727,433 - +0.0
727,433 - -0.2
727,434 + -1.2
727,434 + +1.0
727,434 + +1.6
727,434 + -0.6
727,468 - -1.0
727,469 + -0.1
727,469 + +0.2
727,469 + -0.2
727,484 - +1.5
727,485 + -1.2
727,485 + -0.6
727,485 + -1.3
727,485 + +0.8
727,486 - +0.3
727,486 - +0.3
727,486 - +0.3
727,497 + -0.4
727,528 + MMP_RS03840 0.13 +0.2
727,564 - MMP_RS03840 0.24 -0.9
727,656 - MMP_RS03840 0.53 -1.0
727,781 + +0.4
727,782 - +0.5
727,810 - +0.6
727,848 + -0.6
727,873 - +0.1
727,878 - +0.1
727,879 + -1.1
728,024 + MMP_RS03845 0.16 -1.0
728,075 - MMP_RS03845 0.21 -1.0
728,198 + MMP_RS03845 0.35 -0.3
728,219 + MMP_RS03845 0.37 +0.9
728,323 + MMP_RS03845 0.48 +0.0
728,382 + MMP_RS03845 0.55 -0.5
728,472 + MMP_RS03845 0.64 -0.5
728,583 + MMP_RS03845 0.76 +0.4
728,602 + MMP_RS03845 0.79 +0.0
728,626 - MMP_RS03845 0.81 +0.7
728,627 + MMP_RS03845 0.81 +0.3
728,627 + MMP_RS03845 0.81 +0.2
728,640 - MMP_RS03845 0.83 +1.0
728,641 + MMP_RS03845 0.83 +0.2
728,658 - MMP_RS03845 0.85 -0.7
728,704 + MMP_RS03845 0.90 +0.8
728,777 - +0.2

Or see this region's nucleotide sequence