Strain Fitness in Pantoea sp. MT58 around IAI47_21345

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,856	+		IAI47_21340	0.37	+2.3
2,857	-		IAI47_21340	0.37	+0.8
2,857	-		IAI47_21340	0.37	-1.0
2,880	+		IAI47_21340	0.39	+0.8
2,880	+		IAI47_21340	0.39	-2.0
2,880	+		IAI47_21340	0.39	-1.4
2,880	+		IAI47_21340	0.39	+0.9
2,880	+		IAI47_21340	0.39	+1.0
2,880	+		IAI47_21340	0.39	+0.5
2,880	+		IAI47_21340	0.39	-0.8
2,881	-		IAI47_21340	0.39	-0.7
2,881	-		IAI47_21340	0.39	-0.1
2,881	-		IAI47_21340	0.39	+1.2
2,901	+		IAI47_21340	0.41	+0.0
2,902	-		IAI47_21340	0.41	-0.5
2,914	+		IAI47_21340	0.42	+0.5
2,914	+		IAI47_21340	0.42	-1.5
2,924	+		IAI47_21340	0.43	-0.5
2,924	+		IAI47_21340	0.43	-0.2
2,925	-		IAI47_21340	0.43	-0.8
2,966	+		IAI47_21340	0.47	+2.1
2,966	+		IAI47_21340	0.47	-0.5
2,985	-		IAI47_21340	0.48	-1.0
2,989	+		IAI47_21340	0.49	-0.8
2,989	+		IAI47_21340	0.49	+0.8
2,989	+		IAI47_21340	0.49	-1.0
2,989	+		IAI47_21340	0.49	-0.8
2,989	+		IAI47_21340	0.49	+1.9
2,990	-		IAI47_21340	0.49	+2.5
2,990	-		IAI47_21340	0.49	+0.8
2,990	-		IAI47_21340	0.49	+1.3
2,990	-		IAI47_21340	0.49	+1.5
3,123	+		IAI47_21340	0.60	-1.5
3,123	+		IAI47_21340	0.60	-2.4
3,123	+		IAI47_21340	0.60	-0.8
3,123	+		IAI47_21340	0.60	-1.5
3,124	-		IAI47_21340	0.60	-1.6
3,124	-		IAI47_21340	0.60	+1.2
3,124	-		IAI47_21340	0.60	+1.4
3,124	-		IAI47_21340	0.60	-0.8
3,124	-		IAI47_21340	0.60	+2.0
3,124	-		IAI47_21340	0.60	+0.2
3,124	-		IAI47_21340	0.60	+1.9
3,144	-		IAI47_21340	0.62	+0.2
3,154	+		IAI47_21340	0.62	-0.3
3,175	+		IAI47_21340	0.64	+1.1
3,175	+		IAI47_21340	0.64	-0.5
3,176	-		IAI47_21340	0.64	-0.0
3,176	-		IAI47_21340	0.64	+0.0
3,178	+		IAI47_21340	0.64	+1.2
3,178	+		IAI47_21340	0.64	-2.2
3,179	-		IAI47_21340	0.65	+2.1
3,179	-		IAI47_21340	0.65	+1.5
3,179	-		IAI47_21340	0.65	-0.5
3,201	+		IAI47_21340	0.66	+4.4
3,238	+		IAI47_21340	0.70	+1.2
3,238	+		IAI47_21340	0.70	+0.8
3,238	+		IAI47_21340	0.70	-3.3
3,238	+		IAI47_21340	0.70	-1.4
3,238	+		IAI47_21340	0.70	+1.8
3,238	+		IAI47_21340	0.70	-2.1
3,238	+		IAI47_21340	0.70	-1.2
3,238	+		IAI47_21340	0.70	+2.6
3,239	-		IAI47_21340	0.70	+0.0
3,239	-		IAI47_21340	0.70	-1.4
3,239	-		IAI47_21340	0.70	-0.6
3,239	-		IAI47_21340	0.70	-0.8
3,239	-		IAI47_21340	0.70	+2.0
3,239	-		IAI47_21340	0.70	+1.9
3,251	-		IAI47_21340	0.71	+3.7
3,266	+		IAI47_21340	0.72	+0.5
3,327	-		IAI47_21340	0.77	-0.5
3,358	+		IAI47_21340	0.80	-2.0
3,359	-		IAI47_21340	0.80	+0.2
3,359	-		IAI47_21340	0.80	+0.9
3,378	+		IAI47_21340	0.81	+0.6
3,378	+		IAI47_21340	0.81	+1.6
3,378	+		IAI47_21340	0.81	-1.4
3,379	-		IAI47_21340	0.81	+1.9
3,379	-		IAI47_21340	0.81	+2.8
3,379	-		IAI47_21340	0.81	-3.1
3,383	+		IAI47_21340	0.82	+1.5
3,383	+		IAI47_21340	0.82	+0.5
3,383	+		IAI47_21340	0.82	+1.0
3,383	+		IAI47_21340	0.82	+2.0
3,383	+		IAI47_21340	0.82	-0.8
3,383	+		IAI47_21340	0.82	-0.0
3,383	+		IAI47_21340	0.82	+1.0
3,383	+		IAI47_21340	0.82	-1.0
3,383	+		IAI47_21340	0.82	-0.8
3,383	+		IAI47_21340	0.82	-1.8
3,383	+		IAI47_21340	0.82	-1.0
3,384	-		IAI47_21340	0.82	-1.7
3,384	-		IAI47_21340	0.82	+1.3
3,384	-		IAI47_21340	0.82	-0.2
3,384	-		IAI47_21340	0.82	-0.2
3,384	-		IAI47_21340	0.82	-0.2
3,384	-		IAI47_21340	0.82	-0.5
3,384	-		IAI47_21340	0.82	+1.4
3,384	-		IAI47_21340	0.82	+4.6
3,384	-		IAI47_21340	0.82	-1.7
3,415	+		IAI47_21340	0.84	-0.8
3,415	+		IAI47_21340	0.84	-1.2
3,416	-		IAI47_21340	0.85	-1.7
3,474	-		IAI47_21340	0.89	-0.4
3,474	-		IAI47_21340	0.89	+0.5
3,474	-		IAI47_21340	0.89	+0.2
3,477	+		IAI47_21340	0.90	+0.6
3,478	-		IAI47_21340	0.90	+0.8
3,480	+		IAI47_21340	0.90	+1.1
3,481	-				-0.5
3,481	-				-0.1
3,507	-				+0.2
3,507	-				-0.5
3,510	+				-0.5
3,510	+				-1.9
3,510	+				-0.6
3,511	-				-1.4
3,569	+				-2.0
3,569	+				-0.5
3,570	-				+0.3
3,570	-				-1.9
3,570	-				-0.5
3,570	-				+0.5
3,570	-				-0.2
3,585	+				-0.5
3,585	+				+0.6
3,585	+				+0.8
3,585	+				+1.5
3,585	+				-0.5
3,586	-				-0.8
3,586	-				-0.5
3,590	+				-0.8
3,591	-				-1.5
3,614	+				-1.2
3,614	+				+1.4
3,614	+				+1.3
3,614	+				-0.9
3,614	+				+0.5
3,614	+				+1.9
3,614	+				-1.3
3,614	+				+1.7
3,614	+				+0.5
3,614	+				+0.3
3,614	+				+2.2
3,615	-				+0.9
3,615	-				+1.4
3,615	-				+0.5
3,615	-				-1.1
3,615	-				-1.0
3,616	+				+0.5
3,616	+				-0.8
3,616	+				-1.9
3,617	-				-1.7
3,617	-				+1.1
3,617	-				-1.0
3,617	-				+0.8
3,617	-				-1.7
3,617	-				+0.5
3,629	+				-1.4
3,636	+				+1.1
3,636	+				-1.8
3,637	-				+1.1
3,649	+				+3.8
3,649	+				-0.7
3,649	+				+1.8
3,649	+				-0.5
3,650	-				-0.0
3,650	-				+0.2
3,664	+				-1.4
3,665	-				-0.8
3,665	-				-1.2
3,665	-				+1.3
3,668	+				+0.8
3,668	+				+1.8
3,669	-				-0.2
3,669	-				-2.1
3,669	-				-2.1
3,669	-				-1.7
3,669	-				+1.5
3,707	+				-2.7
3,707	+				-0.5
3,707	+				+2.8
3,707	+				+2.3
3,713	+				+0.2
3,741	+				-1.8
3,754	+				+0.9
3,754	+				-2.6
3,755	-				+1.2
3,755	-				-0.4
3,755	-				-0.7
3,757	+				-0.8
3,795	+				-0.5
3,795	+				+1.8
3,795	+				-0.4
3,796	-				+1.0
3,796	-				+1.9
3,796	-				-0.4
3,796	-				-0.2
3,796	-				+0.2
3,796	-				-0.8
3,796	-				-1.8
3,796	-				-0.8
3,796	-				-3.0
3,799	+				+1.0
3,799	+				-1.0
3,799	+				+0.2
3,799	+				-0.1
3,799	+				-1.9
3,799	+				+1.0
3,800	-				+1.3
3,800	-				-1.2
3,800	-				-2.6
3,800	-				+0.1
3,800	-				-0.8
3,800	-				-0.7
3,800	-				-1.9
3,800	-				+2.5
3,800	-				-1.0
3,802	+				-0.5
3,802	+				-0.2
3,817	+				+0.8
3,817	+				-2.2
3,817	+				+0.0
3,834	+				+1.1
3,835	-				+1.5
3,835	-				-2.2
3,837	+				-2.4
3,838	-				-0.5
3,838	-				-0.9
3,846	-				-1.6
3,853	-				+0.2
3,853	-				-1.0
3,856	+				+0.2
3,856	+				+0.3
3,856	+				-0.6
3,856	+				+0.2
3,857	-				-1.1
3,857	-				+0.3
3,876	+		IAI47_21345	0.12	+1.4
3,876	+		IAI47_21345	0.12	+1.2
3,877	-		IAI47_21345	0.13	-1.4
3,877	-		IAI47_21345	0.13	+0.1
3,910	+		IAI47_21345	0.29	+0.6
3,910	+		IAI47_21345	0.29	-0.5
3,911	-		IAI47_21345	0.29	+1.1
3,912	+		IAI47_21345	0.29	-0.5
3,913	-		IAI47_21345	0.30	-2.3
3,913	-		IAI47_21345	0.30	-2.5
3,913	-		IAI47_21345	0.30	-0.3
3,988	+		IAI47_21345	0.66	+1.0
3,988	+		IAI47_21345	0.66	-1.6
3,988	+		IAI47_21345	0.66	-2.9
3,988	+		IAI47_21345	0.66	-0.3
3,988	+		IAI47_21345	0.66	-1.0
3,988	+		IAI47_21345	0.66	-0.7
3,989	-		IAI47_21345	0.67	-2.0
3,989	-		IAI47_21345	0.67	-0.9
3,989	-		IAI47_21345	0.67	+1.8
3,989	-		IAI47_21345	0.67	+0.6
3,989	-		IAI47_21345	0.67	-2.2
3,989	-		IAI47_21345	0.67	-1.7
3,989	-		IAI47_21345	0.67	-2.0
3,989	-		IAI47_21345	0.67	+0.6
3,989	-		IAI47_21345	0.67	-0.4
3,989	-		IAI47_21345	0.67	+0.0
4,006	+		IAI47_21345	0.75	+1.2
4,109	-				-2.2
4,256	+				-0.9
4,256	+				+1.3
4,256	+				+0.9
4,257	-				-0.4
4,273	+				+2.4
4,273	+				-0.3
4,273	+				-3.0
4,273	+				-0.5
4,274	-				+1.3
4,274	-				-1.0
4,274	-				-1.6
4,325	+				-1.0
4,325	+				+1.2
4,325	+				-1.4
4,325	+				+0.1
4,326	-				-0.1
4,326	-				+0.2
4,332	-				+1.2
4,332	-				-1.4
4,355	+				-0.3
4,355	+				-2.5
4,355	+				+1.8
4,390	+				-0.2
4,390	+				-0.9
4,390	+				-0.0
4,390	+				-1.8
4,390	+				+0.2
4,391	-				-0.2
4,391	-				-1.5
4,410	+				-1.0
4,410	+				-0.8
4,411	-				+1.1
4,411	-				-0.5
4,412	+				-0.1
4,413	-				-1.8
4,413	-				+1.6
4,443	+		IAI47_21350	0.11	+0.4
4,443	+		IAI47_21350	0.11	-0.2
4,468	-		IAI47_21350	0.12	-1.4
4,506	+		IAI47_21350	0.14	-1.2
4,506	+		IAI47_21350	0.14	-0.2
4,506	+		IAI47_21350	0.14	-0.2
4,506	+		IAI47_21350	0.14	+1.6
4,506	+		IAI47_21350	0.14	+1.1
4,506	+		IAI47_21350	0.14	-1.7
4,507	-		IAI47_21350	0.14	-2.7
4,507	-		IAI47_21350	0.14	+0.5
4,507	-		IAI47_21350	0.14	-1.2
4,535	+		IAI47_21350	0.16	+1.0
4,535	+		IAI47_21350	0.16	-2.6
4,535	+		IAI47_21350	0.16	-0.2
4,536	-		IAI47_21350	0.16	-1.9
4,536	-		IAI47_21350	0.16	-1.0
4,545	+		IAI47_21350	0.16	-1.0
4,545	+		IAI47_21350	0.16	-0.5
4,546	-		IAI47_21350	0.16	-1.2
4,546	-		IAI47_21350	0.16	+3.5
4,546	-		IAI47_21350	0.16	-1.5
4,597	+		IAI47_21350	0.19	-2.4
4,598	-		IAI47_21350	0.19	+1.2
4,638	+		IAI47_21350	0.21	-0.0
4,639	-		IAI47_21350	0.22	-0.8
4,639	-		IAI47_21350	0.22	+1.8
4,639	-		IAI47_21350	0.22	+0.6
4,639	-		IAI47_21350	0.22	-0.3
4,749	+		IAI47_21350	0.28	-1.4
4,750	-		IAI47_21350	0.28	-1.5
4,756	+		IAI47_21350	0.28	-0.2
4,756	+		IAI47_21350	0.28	-1.0
4,757	-		IAI47_21350	0.28	+1.1
4,757	-		IAI47_21350	0.28	-0.2
4,777	-		IAI47_21350	0.29	-2.3
4,777	-		IAI47_21350	0.29	+1.6
4,782	+		IAI47_21350	0.30	+0.2
4,782	+		IAI47_21350	0.30	+0.2
4,782	+		IAI47_21350	0.30	-1.0
4,782	+		IAI47_21350	0.30	+1.8
4,783	-		IAI47_21350	0.30	-0.1
4,785	+		IAI47_21350	0.30	+1.6
4,786	-		IAI47_21350	0.30	-1.7
4,786	-		IAI47_21350	0.30	-0.5
4,837	+		IAI47_21350	0.33	+1.9
4,838	-		IAI47_21350	0.33	+0.2
4,838	-		IAI47_21350	0.33	-0.0
4,846	+		IAI47_21350	0.33	-2.5
4,846	+		IAI47_21350	0.33	-1.0
4,846	+		IAI47_21350	0.33	+1.8
4,846	+		IAI47_21350	0.33	+0.9
4,847	-		IAI47_21350	0.33	+2.8
4,847	-		IAI47_21350	0.33	+2.5
4,847	-		IAI47_21350	0.33	+0.5
4,847	-		IAI47_21350	0.33	-1.0
4,921	-		IAI47_21350	0.37	+0.3
4,921	-		IAI47_21350	0.37	-2.5
4,945	-		IAI47_21350	0.39	+2.0
4,973	+		IAI47_21350	0.40	-0.5
4,973	+		IAI47_21350	0.40	+0.7
4,973	+		IAI47_21350	0.40	-0.8
4,974	-		IAI47_21350	0.40	-2.4
4,974	-		IAI47_21350	0.40	-0.5
4,974	-		IAI47_21350	0.40	-0.2
4,974	-		IAI47_21350	0.40	+0.1
4,974	-		IAI47_21350	0.40	+0.2
4,974	-		IAI47_21350	0.40	-2.0
4,974	-		IAI47_21350	0.40	+1.5
4,982	+		IAI47_21350	0.41	+2.0
4,982	+		IAI47_21350	0.41	-0.8
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	+0.2
4,982	+		IAI47_21350	0.41	-1.2
4,982	+		IAI47_21350	0.41	+0.1
4,982	+		IAI47_21350	0.41	-0.8
4,982	+		IAI47_21350	0.41	+0.2
4,982	+		IAI47_21350	0.41	-1.9
4,982	+		IAI47_21350	0.41	-2.9
4,982	+		IAI47_21350	0.41	-1.0
4,982	+		IAI47_21350	0.41	+0.6
4,982	+		IAI47_21350	0.41	-0.3
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	-1.0
4,982	+		IAI47_21350	0.41	-1.0
4,982	+		IAI47_21350	0.41	-0.1
4,983	-		IAI47_21350	0.41	+1.8
4,983	-		IAI47_21350	0.41	-1.8
4,983	-		IAI47_21350	0.41	-1.7
4,983	-		IAI47_21350	0.41	-1.8
4,983	-		IAI47_21350	0.41	-0.0
4,983	-		IAI47_21350	0.41	-2.3
4,983	-		IAI47_21350	0.41	-0.7
4,983	-		IAI47_21350	0.41	-1.9
4,983	-		IAI47_21350	0.41	+0.2
4,983	-		IAI47_21350	0.41	+0.3
4,983	-		IAI47_21350	0.41	+2.2
4,983	-		IAI47_21350	0.41	-2.5
4,983	-		IAI47_21350	0.41	+0.2
4,993	-		IAI47_21350	0.41	+3.0
5,002	+		IAI47_21350	0.42	+0.2
5,002	+		IAI47_21350	0.42	-1.8
5,003	-		IAI47_21350	0.42	-1.2
5,014	-		IAI47_21350	0.43	+0.4