Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21120 and IAI47_21125 are separated by 86 nucleotides IAI47_21125 and IAI47_21130 are separated by 487 nucleotides
IAI47_21120: IAI47_21120 - arsenic transporter, at 472,554 to 473,837
_21120
IAI47_21125: IAI47_21125 - metalloregulator ArsR/SmtB family transcription factor, at 473,924 to 474,277
_21125
IAI47_21130: IAI47_21130 - SulP family inorganic anion transporter, at 474,765 to 476,243
_21130
Position (kb) 473
474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 472.927 kb on + strand, within IAI47_21120 at 472.927 kb on + strand, within IAI47_21120 at 472.928 kb on - strand, within IAI47_21120 at 472.957 kb on + strand, within IAI47_21120 at 472.958 kb on - strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.969 kb on + strand, within IAI47_21120 at 472.970 kb on - strand, within IAI47_21120 at 472.970 kb on - strand, within IAI47_21120 at 472.970 kb on - strand, within IAI47_21120 at 472.992 kb on + strand, within IAI47_21120 at 472.992 kb on + strand, within IAI47_21120 at 472.992 kb on + strand, within IAI47_21120 at 472.993 kb on - strand, within IAI47_21120 at 472.993 kb on - strand, within IAI47_21120 at 472.993 kb on - strand, within IAI47_21120 at 473.033 kb on + strand, within IAI47_21120 at 473.034 kb on - strand, within IAI47_21120 at 473.034 kb on - strand, within IAI47_21120 at 473.066 kb on + strand, within IAI47_21120 at 473.066 kb on + strand, within IAI47_21120 at 473.066 kb on + strand, within IAI47_21120 at 473.066 kb on + strand, within IAI47_21120 at 473.067 kb on - strand, within IAI47_21120 at 473.067 kb on - strand, within IAI47_21120 at 473.067 kb on - strand, within IAI47_21120 at 473.165 kb on + strand, within IAI47_21120 at 473.166 kb on - strand, within IAI47_21120 at 473.166 kb on - strand, within IAI47_21120 at 473.186 kb on + strand, within IAI47_21120 at 473.221 kb on + strand, within IAI47_21120 at 473.221 kb on + strand, within IAI47_21120 at 473.221 kb on + strand, within IAI47_21120 at 473.222 kb on - strand, within IAI47_21120 at 473.222 kb on - strand, within IAI47_21120 at 473.222 kb on - strand, within IAI47_21120 at 473.288 kb on + strand, within IAI47_21120 at 473.314 kb on + strand, within IAI47_21120 at 473.314 kb on + strand, within IAI47_21120 at 473.315 kb on - strand, within IAI47_21120 at 473.315 kb on - strand, within IAI47_21120 at 473.315 kb on - strand, within IAI47_21120 at 473.321 kb on + strand, within IAI47_21120 at 473.321 kb on + strand, within IAI47_21120 at 473.322 kb on - strand, within IAI47_21120 at 473.322 kb on - strand, within IAI47_21120 at 473.322 kb on - strand, within IAI47_21120 at 473.322 kb on - strand, within IAI47_21120 at 473.334 kb on - strand, within IAI47_21120 at 473.375 kb on + strand, within IAI47_21120 at 473.376 kb on - strand, within IAI47_21120 at 473.416 kb on - strand, within IAI47_21120 at 473.465 kb on + strand, within IAI47_21120 at 473.465 kb on + strand, within IAI47_21120 at 473.465 kb on + strand, within IAI47_21120 at 473.465 kb on + strand, within IAI47_21120 at 473.466 kb on - strand, within IAI47_21120 at 473.489 kb on + strand, within IAI47_21120 at 473.489 kb on + strand, within IAI47_21120 at 473.489 kb on + strand, within IAI47_21120 at 473.490 kb on - strand, within IAI47_21120 at 473.490 kb on - strand, within IAI47_21120 at 473.544 kb on - strand, within IAI47_21120 at 473.544 kb on - strand, within IAI47_21120 at 473.657 kb on + strand, within IAI47_21120 at 473.657 kb on + strand, within IAI47_21120 at 473.657 kb on + strand, within IAI47_21120 at 473.658 kb on - strand, within IAI47_21120 at 473.702 kb on + strand, within IAI47_21120 at 473.702 kb on + strand, within IAI47_21120 at 473.703 kb on - strand, within IAI47_21120 at 473.703 kb on - strand, within IAI47_21120 at 473.711 kb on + strand at 473.712 kb on - strand at 473.712 kb on - strand at 473.768 kb on + strand at 473.769 kb on - strand at 473.769 kb on - strand at 473.792 kb on + strand at 473.799 kb on + strand at 473.799 kb on + strand at 473.837 kb on + strand at 473.837 kb on + strand at 473.837 kb on + strand at 473.837 kb on + strand at 473.837 kb on + strand at 473.838 kb on - strand at 473.849 kb on + strand at 473.850 kb on - strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.853 kb on - strand at 473.892 kb on + strand at 473.892 kb on + strand at 473.905 kb on - strand at 473.910 kb on + strand at 473.911 kb on - strand at 473.914 kb on + strand at 474.012 kb on + strand, within IAI47_21125 at 474.012 kb on + strand, within IAI47_21125 at 474.012 kb on + strand, within IAI47_21125 at 474.013 kb on - strand, within IAI47_21125 at 474.013 kb on - strand, within IAI47_21125 at 474.109 kb on + strand, within IAI47_21125 at 474.109 kb on + strand, within IAI47_21125 at 474.109 kb on + strand, within IAI47_21125 at 474.109 kb on + strand, within IAI47_21125 at 474.109 kb on + strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.110 kb on - strand, within IAI47_21125 at 474.120 kb on - strand, within IAI47_21125 at 474.120 kb on - strand, within IAI47_21125 at 474.138 kb on - strand, within IAI47_21125 at 474.161 kb on + strand, within IAI47_21125 at 474.162 kb on - strand, within IAI47_21125 at 474.163 kb on + strand, within IAI47_21125 at 474.163 kb on + strand, within IAI47_21125 at 474.164 kb on - strand, within IAI47_21125 at 474.280 kb on + strand at 474.281 kb on - strand at 474.322 kb on + strand at 474.322 kb on + strand at 474.359 kb on + strand at 474.359 kb on + strand at 474.360 kb on - strand at 474.361 kb on + strand at 474.361 kb on + strand at 474.361 kb on + strand at 474.361 kb on + strand at 474.361 kb on + strand at 474.362 kb on - strand at 474.362 kb on - strand at 474.362 kb on - strand at 474.363 kb on + strand at 474.363 kb on + strand at 474.363 kb on + strand at 474.364 kb on - strand at 474.364 kb on - strand at 474.364 kb on - strand at 474.384 kb on + strand at 474.384 kb on + strand at 474.384 kb on + strand at 474.385 kb on - strand at 474.385 kb on - strand at 474.385 kb on - strand at 474.385 kb on - strand at 474.387 kb on + strand at 474.388 kb on - strand at 474.395 kb on + strand at 474.395 kb on + strand at 474.395 kb on + strand at 474.395 kb on + strand at 474.396 kb on - strand at 474.396 kb on - strand at 474.396 kb on - strand at 474.396 kb on - strand at 474.491 kb on - strand at 474.491 kb on - strand at 474.492 kb on + strand at 474.492 kb on + strand at 474.493 kb on - strand at 474.493 kb on - strand at 474.559 kb on + strand at 474.574 kb on - strand at 474.574 kb on - strand at 474.574 kb on - strand at 474.574 kb on - strand at 474.591 kb on - strand at 474.619 kb on - strand at 474.658 kb on + strand at 474.658 kb on + strand at 474.658 kb on + strand at 474.659 kb on - strand at 474.659 kb on - strand at 474.710 kb on - strand at 474.742 kb on + strand at 474.742 kb on + strand at 474.742 kb on + strand at 474.742 kb on + strand at 474.743 kb on - strand at 474.743 kb on - strand at 474.743 kb on - strand at 474.743 kb on - strand at 474.743 kb on - strand at 474.762 kb on - strand at 474.786 kb on - strand at 474.827 kb on + strand at 474.827 kb on + strand at 474.827 kb on + strand at 474.828 kb on - strand at 474.828 kb on - strand at 474.828 kb on - strand at 474.872 kb on + strand at 474.873 kb on - strand at 474.873 kb on - strand at 474.873 kb on - strand at 474.875 kb on + strand at 474.876 kb on - strand at 474.886 kb on + strand at 474.886 kb on + strand at 474.887 kb on - strand at 474.887 kb on - strand at 474.887 kb on - strand at 474.906 kb on + strand at 474.906 kb on + strand at 474.907 kb on - strand at 474.907 kb on - strand at 474.907 kb on - strand at 474.921 kb on - strand, within IAI47_21130 at 475.029 kb on + strand, within IAI47_21130 at 475.030 kb on - strand, within IAI47_21130 at 475.030 kb on - strand, within IAI47_21130 at 475.030 kb on - strand, within IAI47_21130 at 475.030 kb on - strand, within IAI47_21130 at 475.048 kb on + strand, within IAI47_21130 at 475.060 kb on + strand, within IAI47_21130 at 475.060 kb on + strand, within IAI47_21130 at 475.061 kb on - strand, within IAI47_21130 at 475.153 kb on + strand, within IAI47_21130 at 475.153 kb on + strand, within IAI47_21130 at 475.154 kb on - strand, within IAI47_21130 at 475.164 kb on - strand, within IAI47_21130 at 475.207 kb on - strand, within IAI47_21130 at 475.207 kb on - strand, within IAI47_21130 at 475.207 kb on - strand, within IAI47_21130 at 475.239 kb on + strand, within IAI47_21130 at 475.239 kb on + strand, within IAI47_21130 at 475.240 kb on - strand, within IAI47_21130 at 475.260 kb on - strand, within IAI47_21130
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 472,927 + IAI47_21120 0.29 -1.2 472,927 + IAI47_21120 0.29 -1.6 472,928 - IAI47_21120 0.29 +1.8 472,957 + IAI47_21120 0.31 +1.5 472,958 - IAI47_21120 0.31 +0.3 472,969 + IAI47_21120 0.32 -1.5 472,969 + IAI47_21120 0.32 -1.7 472,969 + IAI47_21120 0.32 +2.5 472,969 + IAI47_21120 0.32 -2.1 472,969 + IAI47_21120 0.32 -1.0 472,969 + IAI47_21120 0.32 -0.5 472,970 - IAI47_21120 0.32 -1.5 472,970 - IAI47_21120 0.32 +1.5 472,970 - IAI47_21120 0.32 -1.2 472,992 + IAI47_21120 0.34 +3.8 472,992 + IAI47_21120 0.34 -0.1 472,992 + IAI47_21120 0.34 +1.6 472,993 - IAI47_21120 0.34 -0.2 472,993 - IAI47_21120 0.34 -0.5 472,993 - IAI47_21120 0.34 -3.0 473,033 + IAI47_21120 0.37 -1.7 473,034 - IAI47_21120 0.37 -1.5 473,034 - IAI47_21120 0.37 +0.8 473,066 + IAI47_21120 0.40 +0.8 473,066 + IAI47_21120 0.40 -2.4 473,066 + IAI47_21120 0.40 -0.5 473,066 + IAI47_21120 0.40 +0.9 473,067 - IAI47_21120 0.40 -0.3 473,067 - IAI47_21120 0.40 +1.8 473,067 - IAI47_21120 0.40 +0.1 473,165 + IAI47_21120 0.48 -0.0 473,166 - IAI47_21120 0.48 -0.5 473,166 - IAI47_21120 0.48 -0.9 473,186 + IAI47_21120 0.49 -1.2 473,221 + IAI47_21120 0.52 +0.1 473,221 + IAI47_21120 0.52 +0.6 473,221 + IAI47_21120 0.52 -0.5 473,222 - IAI47_21120 0.52 +1.6 473,222 - IAI47_21120 0.52 +0.0 473,222 - IAI47_21120 0.52 +1.4 473,288 + IAI47_21120 0.57 -2.1 473,314 + IAI47_21120 0.59 +1.2 473,314 + IAI47_21120 0.59 -2.3 473,315 - IAI47_21120 0.59 -1.4 473,315 - IAI47_21120 0.59 +0.2 473,315 - IAI47_21120 0.59 -1.9 473,321 + IAI47_21120 0.60 -0.5 473,321 + IAI47_21120 0.60 +1.5 473,322 - IAI47_21120 0.60 -2.4 473,322 - IAI47_21120 0.60 -0.5 473,322 - IAI47_21120 0.60 -3.1 473,322 - IAI47_21120 0.60 -1.0 473,334 - IAI47_21120 0.61 +1.2 473,375 + IAI47_21120 0.64 -1.4 473,376 - IAI47_21120 0.64 +0.8 473,416 - IAI47_21120 0.67 -0.5 473,465 + IAI47_21120 0.71 +0.8 473,465 + IAI47_21120 0.71 -2.5 473,465 + IAI47_21120 0.71 -0.2 473,465 + IAI47_21120 0.71 -1.7 473,466 - IAI47_21120 0.71 -1.2 473,489 + IAI47_21120 0.73 -2.3 473,489 + IAI47_21120 0.73 -0.6 473,489 + IAI47_21120 0.73 -1.4 473,490 - IAI47_21120 0.73 +0.4 473,490 - IAI47_21120 0.73 +1.8 473,544 - IAI47_21120 0.77 +0.2 473,544 - IAI47_21120 0.77 -0.1 473,657 + IAI47_21120 0.86 -1.7 473,657 + IAI47_21120 0.86 -0.5 473,657 + IAI47_21120 0.86 +0.8 473,658 - IAI47_21120 0.86 -0.8 473,702 + IAI47_21120 0.89 +0.1 473,702 + IAI47_21120 0.89 -0.1 473,703 - IAI47_21120 0.89 -0.3 473,703 - IAI47_21120 0.89 +0.9 473,711 + -1.3 473,712 - -1.5 473,712 - +2.4 473,768 + -0.0 473,769 - -1.2 473,769 - +0.2 473,792 + +1.2 473,799 + -1.5 473,799 + +2.3 473,837 + +0.2 473,837 + -3.2 473,837 + -1.0 473,837 + -0.5 473,837 + -0.2 473,838 - -1.7 473,849 + -0.5 473,850 - -1.5 473,852 + -0.8 473,852 + -1.2 473,852 + +0.9 473,853 - +1.6 473,892 + +2.3 473,892 + -1.4 473,905 - +1.7 473,910 + +0.3 473,911 - -1.7 473,914 + -0.2 474,012 + IAI47_21125 0.25 +1.3 474,012 + IAI47_21125 0.25 -1.8 474,012 + IAI47_21125 0.25 -1.5 474,013 - IAI47_21125 0.25 +2.1 474,013 - IAI47_21125 0.25 +1.2 474,109 + IAI47_21125 0.52 +0.2 474,109 + IAI47_21125 0.52 -1.9 474,109 + IAI47_21125 0.52 +1.2 474,109 + IAI47_21125 0.52 -0.3 474,109 + IAI47_21125 0.52 +0.7 474,110 - IAI47_21125 0.53 +2.5 474,110 - IAI47_21125 0.53 +2.4 474,110 - IAI47_21125 0.53 -0.8 474,110 - IAI47_21125 0.53 -2.1 474,110 - IAI47_21125 0.53 -1.7 474,110 - IAI47_21125 0.53 +0.7 474,110 - IAI47_21125 0.53 +2.7 474,120 - IAI47_21125 0.55 -2.1 474,120 - IAI47_21125 0.55 +1.7 474,138 - IAI47_21125 0.60 -0.7 474,161 + IAI47_21125 0.67 +1.0 474,162 - IAI47_21125 0.67 +2.4 474,163 + IAI47_21125 0.68 +1.5 474,163 + IAI47_21125 0.68 -1.2 474,164 - IAI47_21125 0.68 -0.9 474,280 + +0.7 474,281 - +0.9 474,322 + -2.4 474,322 + -0.6 474,359 + -1.0 474,359 + -0.5 474,360 - +0.6 474,361 + +1.4 474,361 + +3.1 474,361 + +1.4 474,361 + +0.1 474,361 + +0.6 474,362 - -0.8 474,362 - -0.0 474,362 - +0.2 474,363 + -0.1 474,363 + -0.3 474,363 + +1.5 474,364 - +2.1 474,364 - +0.3 474,364 - -1.0 474,384 + +0.8 474,384 + +0.6 474,384 + -2.7 474,385 - +0.6 474,385 - +0.8 474,385 - -1.0 474,385 - -0.7 474,387 + +1.2 474,388 - +6.2 474,395 + +0.5 474,395 + +1.5 474,395 + +2.2 474,395 + -0.5 474,396 - -0.6 474,396 - -1.9 474,396 - -0.5 474,396 - -1.4 474,491 - -0.8 474,491 - -1.9 474,492 + -0.1 474,492 + -1.8 474,493 - +1.4 474,493 - +1.1 474,559 + +0.3 474,574 - +1.0 474,574 - +3.2 474,574 - -1.0 474,574 - -0.8 474,591 - +1.0 474,619 - +1.2 474,658 + -3.2 474,658 + +0.4 474,658 + +1.6 474,659 - -1.7 474,659 - +0.3 474,710 - +0.9 474,742 + -1.7 474,742 + -0.5 474,742 + -1.0 474,742 + +1.6 474,743 - +0.8 474,743 - +1.7 474,743 - -1.4 474,743 - -3.3 474,743 - +2.7 474,762 - -1.8 474,786 - -1.4 474,827 + -0.2 474,827 + -3.4 474,827 + +0.0 474,828 - +0.3 474,828 - +0.4 474,828 - -0.5 474,872 + +1.1 474,873 - -2.0 474,873 - -0.2 474,873 - +0.2 474,875 + -1.5 474,876 - -1.0 474,886 + -1.7 474,886 + +0.2 474,887 - +1.8 474,887 - +0.7 474,887 - +0.4 474,906 + +1.2 474,906 + -2.1 474,907 - +0.4 474,907 - +0.5 474,907 - -0.8 474,921 - IAI47_21130 0.11 -2.1 475,029 + IAI47_21130 0.18 -2.2 475,030 - IAI47_21130 0.18 +0.5 475,030 - IAI47_21130 0.18 -2.3 475,030 - IAI47_21130 0.18 -1.1 475,030 - IAI47_21130 0.18 +0.3 475,048 + IAI47_21130 0.19 +0.2 475,060 + IAI47_21130 0.20 +0.7 475,060 + IAI47_21130 0.20 -1.4 475,061 - IAI47_21130 0.20 -1.7 475,153 + IAI47_21130 0.26 -1.6 475,153 + IAI47_21130 0.26 +0.8 475,154 - IAI47_21130 0.26 -0.4 475,164 - IAI47_21130 0.27 -0.5 475,207 - IAI47_21130 0.30 +0.6 475,207 - IAI47_21130 0.30 -2.8 475,207 - IAI47_21130 0.30 +2.9 475,239 + IAI47_21130 0.32 -0.8 475,239 + IAI47_21130 0.32 +0.8 475,240 - IAI47_21130 0.32 -0.2 475,260 - IAI47_21130 0.33 +0.2
Or see this region's nucleotide sequence