Strain Fitness in Pantoea sp. MT58 around IAI47_16570

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,509,739	+				-1.8
3,509,767	-				-1.2
3,509,773	+				-1.5
3,509,834	-		IAI47_16565	0.12	+3.6
3,509,884	+		IAI47_16565	0.17	-0.4
3,509,885	-		IAI47_16565	0.17	+0.7
3,509,885	-		IAI47_16565	0.17	-0.7
3,509,894	+		IAI47_16565	0.18	+0.2
3,509,894	+		IAI47_16565	0.18	+0.5
3,509,894	+		IAI47_16565	0.18	-1.8
3,509,915	+		IAI47_16565	0.20	+0.1
3,509,920	+		IAI47_16565	0.20	-1.2
3,509,920	+		IAI47_16565	0.20	-0.4
3,509,920	+		IAI47_16565	0.20	+1.4
3,509,921	-		IAI47_16565	0.21	-0.1
3,509,921	-		IAI47_16565	0.21	-0.4
3,509,921	-		IAI47_16565	0.21	+0.6
3,509,921	-		IAI47_16565	0.21	+2.4
3,509,922	+		IAI47_16565	0.21	+1.4
3,509,923	+		IAI47_16565	0.21	+0.3
3,509,923	-		IAI47_16565	0.21	-1.7
3,509,923	-		IAI47_16565	0.21	-2.5
3,509,972	+		IAI47_16565	0.26	-1.5
3,510,008	+		IAI47_16565	0.30	+2.6
3,510,008	+		IAI47_16565	0.30	+0.4
3,510,014	+		IAI47_16565	0.30	-0.4
3,510,014	+		IAI47_16565	0.30	-0.4
3,510,015	-		IAI47_16565	0.30	+0.4
3,510,017	+		IAI47_16565	0.30	+1.1
3,510,045	+		IAI47_16565	0.33	+1.3
3,510,055	+		IAI47_16565	0.34	+1.5
3,510,056	-		IAI47_16565	0.34	+0.1
3,510,056	-		IAI47_16565	0.34	+1.1
3,510,056	-		IAI47_16565	0.34	+2.1
3,510,102	-		IAI47_16565	0.39	-0.2
3,510,102	-		IAI47_16565	0.39	-1.9
3,510,138	+		IAI47_16565	0.43	-2.5
3,510,139	-		IAI47_16565	0.43	+0.8
3,510,139	-		IAI47_16565	0.43	+0.6
3,510,144	+		IAI47_16565	0.44	+1.4
3,510,144	+		IAI47_16565	0.44	-1.7
3,510,144	+		IAI47_16565	0.44	+0.5
3,510,145	-		IAI47_16565	0.44	-0.8
3,510,156	-		IAI47_16565	0.45	+0.4
3,510,156	-		IAI47_16565	0.45	+1.1
3,510,156	-		IAI47_16565	0.45	+1.1
3,510,174	-		IAI47_16565	0.47	+0.8
3,510,183	+		IAI47_16565	0.48	-1.0
3,510,183	+		IAI47_16565	0.48	-1.8
3,510,184	-		IAI47_16565	0.48	+1.7
3,510,204	+		IAI47_16565	0.50	+0.4
3,510,204	+		IAI47_16565	0.50	+0.5
3,510,204	+		IAI47_16565	0.50	+3.1
3,510,205	-		IAI47_16565	0.50	-0.3
3,510,208	+		IAI47_16565	0.50	+1.3
3,510,208	+		IAI47_16565	0.50	+0.1
3,510,208	+		IAI47_16565	0.50	-0.7
3,510,208	+		IAI47_16565	0.50	+0.6
3,510,208	+		IAI47_16565	0.50	-0.0
3,510,208	+		IAI47_16565	0.50	+2.7
3,510,209	-		IAI47_16565	0.50	+0.4
3,510,209	-		IAI47_16565	0.50	+0.6
3,510,209	-		IAI47_16565	0.50	-0.9
3,510,209	-		IAI47_16565	0.50	+1.9
3,510,209	-		IAI47_16565	0.50	+0.7
3,510,214	-		IAI47_16565	0.51	+0.9
3,510,214	-		IAI47_16565	0.51	-0.9
3,510,214	-		IAI47_16565	0.51	-1.5
3,510,272	+		IAI47_16565	0.57	+2.1
3,510,272	+		IAI47_16565	0.57	-0.7
3,510,273	-		IAI47_16565	0.57	+0.5
3,510,273	-		IAI47_16565	0.57	+0.5
3,510,273	-		IAI47_16565	0.57	-1.5
3,510,278	+		IAI47_16565	0.57	+2.0
3,510,278	+		IAI47_16565	0.57	-1.8
3,510,278	+		IAI47_16565	0.57	-1.5
3,510,278	+		IAI47_16565	0.57	-0.1
3,510,278	+		IAI47_16565	0.57	-0.2
3,510,278	+		IAI47_16565	0.57	-0.5
3,510,278	+		IAI47_16565	0.57	+1.9
3,510,279	-		IAI47_16565	0.57	-2.4
3,510,279	-		IAI47_16565	0.57	+0.9
3,510,281	+		IAI47_16565	0.58	-0.6
3,510,282	-		IAI47_16565	0.58	-0.9
3,510,282	-		IAI47_16565	0.58	-0.2
3,510,282	-		IAI47_16565	0.58	-2.1
3,510,282	-		IAI47_16565	0.58	-1.1
3,510,302	-		IAI47_16565	0.60	+1.2
3,510,302	-		IAI47_16565	0.60	-0.6
3,510,351	+		IAI47_16565	0.65	+0.5
3,510,351	+		IAI47_16565	0.65	-1.3
3,510,351	+		IAI47_16565	0.65	-0.9
3,510,351	+		IAI47_16565	0.65	+0.4
3,510,351	+		IAI47_16565	0.65	-1.4
3,510,351	+		IAI47_16565	0.65	-1.6
3,510,351	+		IAI47_16565	0.65	-0.3
3,510,351	+		IAI47_16565	0.65	+2.8
3,510,352	-		IAI47_16565	0.65	-2.9
3,510,352	-		IAI47_16565	0.65	-0.3
3,510,352	-		IAI47_16565	0.65	-2.5
3,510,352	-		IAI47_16565	0.65	-0.5
3,510,352	-		IAI47_16565	0.65	-0.1
3,510,354	+		IAI47_16565	0.65	-0.6
3,510,354	+		IAI47_16565	0.65	+0.1
3,510,354	+		IAI47_16565	0.65	+0.1
3,510,354	+		IAI47_16565	0.65	+0.4
3,510,355	-		IAI47_16565	0.65	+0.9
3,510,355	-		IAI47_16565	0.65	-1.5
3,510,355	-		IAI47_16565	0.65	+0.5
3,510,372	+		IAI47_16565	0.67	+0.1
3,510,373	-		IAI47_16565	0.67	+0.7
3,510,373	-		IAI47_16565	0.67	+0.5
3,510,373	-		IAI47_16565	0.67	+1.9
3,510,530	+		IAI47_16565	0.83	+1.2
3,510,530	+		IAI47_16565	0.83	+1.1
3,510,531	-		IAI47_16565	0.83	+1.4
3,510,531	-		IAI47_16565	0.83	+1.2
3,510,531	-		IAI47_16565	0.83	-0.1
3,510,578	+		IAI47_16565	0.88	-1.1
3,510,612	+				-1.0
3,510,629	+				-0.2
3,510,629	+				-0.3
3,510,629	+				+0.1
3,510,630	-				+1.0
3,510,630	-				-0.2
3,510,630	-				+0.9
3,510,632	+				+0.5
3,510,632	+				-0.5
3,510,632	+				+0.3
3,510,633	-				+0.4
3,510,648	+				-1.7
3,510,648	+				+0.7
3,510,648	+				+0.1
3,510,648	+				-1.2
3,510,648	+				-1.7
3,510,648	+				+0.9
3,510,649	-				-0.2
3,510,649	-				+0.5
3,510,649	-				-0.8
3,510,649	-				+1.2
3,510,649	-				+1.6
3,510,649	-				-1.4
3,510,649	-				-1.9
3,510,655	+				-0.3
3,510,655	+				+0.1
3,510,655	+				+1.4
3,510,655	+				+1.5
3,510,655	+				-2.8
3,510,656	-				+1.0
3,510,656	-				-2.0
3,510,656	-				+0.2
3,510,666	+				+0.6
3,510,667	-				-1.0
3,510,667	-				+0.3
3,510,667	-				+1.8
3,510,680	+				+0.3
3,510,680	+				-1.4
3,510,681	-				-0.4
3,510,686	+				-0.5
3,510,687	-				-1.1
3,510,694	+				-1.2
3,510,695	-				-1.1
3,510,716	+				-0.4
3,510,716	+				+2.3
3,510,716	+				+1.3
3,510,716	+				+0.5
3,510,716	+				-1.5
3,510,716	+				-0.1
3,510,716	+				-0.2
3,510,716	+				-1.8
3,510,717	-				-2.4
3,510,717	-				+1.5
3,510,717	-				+0.4
3,510,717	-				-1.8
3,510,717	-				+2.1
3,510,717	-				+1.4
3,510,720	+				+1.4
3,510,720	+				+1.5
3,510,720	+				+1.4
3,510,720	+				-1.8
3,510,720	+				+0.0
3,510,720	+				+0.2
3,510,720	+				+1.2
3,510,720	+				+0.8
3,510,720	+				+1.3
3,510,720	+				-1.6
3,510,720	+				+0.8
3,510,720	+				+0.3
3,510,720	+				+0.8
3,510,720	+				+1.1
3,510,720	+				-0.1
3,510,720	+				+0.7
3,510,720	+				-0.3
3,510,720	+				+1.6
3,510,720	+				-1.6
3,510,721	-				+0.2
3,510,721	-				+2.3
3,510,721	-				-0.8
3,510,721	-				+1.4
3,510,721	-				+1.1
3,510,721	-				-0.8
3,510,721	-				-1.0
3,510,721	-				-2.0
3,510,721	-				+0.2
3,510,721	-				-1.5
3,510,721	-				-1.0
3,510,721	-				+0.9
3,510,738	+				+0.1
3,510,739	-				+0.6
3,510,820	-				-0.9
3,510,820	-				+2.1
3,510,851	-				+0.5
3,510,861	+				+1.4
3,510,861	+				+0.5
3,510,862	-				+1.4
3,510,902	+				-1.6
3,510,902	+				+2.0
3,510,903	-				+1.5
3,510,903	-				+2.1
3,510,903	-				+0.4
3,510,903	-				+0.7
3,510,906	+				+0.3
3,510,970	-		IAI47_16570	0.13	-0.2
3,511,000	+		IAI47_16570	0.15	+1.1
3,511,001	+		IAI47_16570	0.15	+1.7
3,511,001	+		IAI47_16570	0.15	+0.4
3,511,002	-		IAI47_16570	0.15	+1.7
3,511,002	-		IAI47_16570	0.15	-0.5
3,511,002	-		IAI47_16570	0.15	+1.5
3,511,011	+		IAI47_16570	0.15	+2.6
3,511,011	+		IAI47_16570	0.15	+0.2
3,511,011	+		IAI47_16570	0.15	+1.9
3,511,024	+		IAI47_16570	0.16	-0.1
3,511,024	+		IAI47_16570	0.16	-0.2
3,511,024	+		IAI47_16570	0.16	-0.4
3,511,024	+		IAI47_16570	0.16	+1.4
3,511,024	+		IAI47_16570	0.16	+1.0
3,511,025	-		IAI47_16570	0.16	+1.0
3,511,025	-		IAI47_16570	0.16	+0.7
3,511,025	-		IAI47_16570	0.16	+0.3
3,511,025	-		IAI47_16570	0.16	-0.7
3,511,025	-		IAI47_16570	0.16	-0.1
3,511,025	-		IAI47_16570	0.16	+1.4
3,511,025	-		IAI47_16570	0.16	-1.4
3,511,025	-		IAI47_16570	0.16	-0.7
3,511,025	-		IAI47_16570	0.16	+0.1
3,511,026	+		IAI47_16570	0.16	+1.0
3,511,026	+		IAI47_16570	0.16	-3.0
3,511,027	-		IAI47_16570	0.16	+1.4
3,511,035	+		IAI47_16570	0.16	+0.7
3,511,035	+		IAI47_16570	0.16	-0.2
3,511,035	+		IAI47_16570	0.16	+3.7
3,511,035	+		IAI47_16570	0.16	+0.4
3,511,036	-		IAI47_16570	0.16	-0.6
3,511,036	-		IAI47_16570	0.16	+0.8
3,511,036	-		IAI47_16570	0.16	+2.8
3,511,062	+		IAI47_16570	0.18	+2.4
3,511,062	+		IAI47_16570	0.18	+1.9
3,511,063	-		IAI47_16570	0.18	+0.6
3,511,066	+		IAI47_16570	0.18	-2.7
3,511,066	+		IAI47_16570	0.18	-0.2
3,511,066	+		IAI47_16570	0.18	-1.9
3,511,066	+		IAI47_16570	0.18	+1.2
3,511,066	+		IAI47_16570	0.18	-2.0
3,511,066	+		IAI47_16570	0.18	-1.1
3,511,066	+		IAI47_16570	0.18	+1.8
3,511,066	+		IAI47_16570	0.18	+0.4
3,511,066	+		IAI47_16570	0.18	-0.6
3,511,067	-		IAI47_16570	0.18	-3.1
3,511,067	-		IAI47_16570	0.18	-0.9
3,511,067	-		IAI47_16570	0.18	+1.1
3,511,067	-		IAI47_16570	0.18	-1.1
3,511,067	-		IAI47_16570	0.18	-2.5
3,511,067	-		IAI47_16570	0.18	+2.1
3,511,112	+		IAI47_16570	0.20	+3.3
3,511,113	-		IAI47_16570	0.20	+0.1
3,511,157	+		IAI47_16570	0.23	-0.7
3,511,157	+		IAI47_16570	0.23	+0.6
3,511,158	-		IAI47_16570	0.23	+0.9
3,511,164	+		IAI47_16570	0.23	-1.4
3,511,239	+		IAI47_16570	0.27	-0.3
3,511,273	+		IAI47_16570	0.29	+0.1
3,511,273	+		IAI47_16570	0.29	-1.2
3,511,273	+		IAI47_16570	0.29	+1.5
3,511,274	-		IAI47_16570	0.29	-2.1
3,511,274	-		IAI47_16570	0.29	+1.3
3,511,274	-		IAI47_16570	0.29	+1.7
3,511,274	-		IAI47_16570	0.29	+0.0
3,511,274	-		IAI47_16570	0.29	-1.0
3,511,274	-		IAI47_16570	0.29	+0.9
3,511,274	-		IAI47_16570	0.29	+0.2
3,511,274	-		IAI47_16570	0.29	-1.6
3,511,276	-		IAI47_16570	0.29	+0.7
3,511,302	-		IAI47_16570	0.30	+2.4
3,511,401	+		IAI47_16570	0.36	-1.7
3,511,401	+		IAI47_16570	0.36	-0.3
3,511,401	+		IAI47_16570	0.36	-1.5
3,511,402	-		IAI47_16570	0.36	-2.0
3,511,521	+		IAI47_16570	0.42	-0.1
3,511,521	+		IAI47_16570	0.42	-0.8
3,511,521	+		IAI47_16570	0.42	-0.8
3,511,521	+		IAI47_16570	0.42	+3.1
3,511,521	+		IAI47_16570	0.42	+0.7
3,511,521	+		IAI47_16570	0.42	-1.4
3,511,521	+		IAI47_16570	0.42	-0.5
3,511,521	+		IAI47_16570	0.42	+0.1
3,511,522	-		IAI47_16570	0.42	+0.9
3,511,522	-		IAI47_16570	0.42	+0.2
3,511,522	-		IAI47_16570	0.42	+0.8
3,511,522	-		IAI47_16570	0.42	-0.5
3,511,522	-		IAI47_16570	0.42	+0.8
3,511,522	-		IAI47_16570	0.42	+0.4
3,511,529	+		IAI47_16570	0.42	+3.3
3,511,529	+		IAI47_16570	0.42	-2.8
3,511,530	-		IAI47_16570	0.42	+0.1
3,511,563	+		IAI47_16570	0.44	+0.7
3,511,563	+		IAI47_16570	0.44	+0.9
3,511,564	-		IAI47_16570	0.44	-0.1
3,511,564	-		IAI47_16570	0.44	-1.4
3,511,575	-		IAI47_16570	0.45	+1.4
3,511,575	-		IAI47_16570	0.45	+0.2
3,511,659	+		IAI47_16570	0.49	+1.1
3,511,660	-		IAI47_16570	0.49	-0.7
3,511,660	-		IAI47_16570	0.49	+1.6
3,511,667	+		IAI47_16570	0.49	+1.0
3,511,668	-		IAI47_16570	0.49	-0.4
3,511,668	-		IAI47_16570	0.49	+1.6
3,511,746	+		IAI47_16570	0.54	+2.2
3,511,746	+		IAI47_16570	0.54	+1.5
3,511,747	-		IAI47_16570	0.54	-0.0
3,511,747	-		IAI47_16570	0.54	-0.0
3,511,747	-		IAI47_16570	0.54	-0.9
3,511,747	-		IAI47_16570	0.54	+0.2
3,511,767	+		IAI47_16570	0.55	+0.2
3,511,767	+		IAI47_16570	0.55	+0.5
3,511,767	+		IAI47_16570	0.55	-3.5
3,511,767	+		IAI47_16570	0.55	+1.0
3,511,768	-		IAI47_16570	0.55	+0.1
3,511,768	-		IAI47_16570	0.55	-0.4
3,511,768	-		IAI47_16570	0.55	-2.2
3,511,772	+		IAI47_16570	0.55	-1.4
3,511,772	+		IAI47_16570	0.55	+1.6
3,511,773	-		IAI47_16570	0.55	-0.3
3,511,773	-		IAI47_16570	0.55	-0.0
3,511,784	+		IAI47_16570	0.56	+0.1
3,511,784	+		IAI47_16570	0.56	+1.4
3,511,784	+		IAI47_16570	0.56	+1.2
3,511,784	+		IAI47_16570	0.56	+0.4
3,511,785	-		IAI47_16570	0.56	+0.1
3,511,785	-		IAI47_16570	0.56	+1.0
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