Strain Fitness in Pantoea sp. MT58 around IAI47_16035

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,386,584	+				-1.2
3,386,585	-				+1.1
3,386,610	+				-0.5
3,386,611	-				+0.8
3,386,611	-				-2.2
3,386,637	+				-1.6
3,386,638	-				-0.5
3,386,662	+				+0.6
3,386,682	-				+4.2
3,386,682	-				+3.5
3,386,687	+				-1.4
3,386,687	+				+0.2
3,386,687	+				+0.6
3,386,687	+				+1.6
3,386,688	-				-1.3
3,386,688	-				-3.4
3,386,688	-				-0.3
3,386,688	-				+1.5
3,386,688	-				+2.2
3,386,688	-				+0.3
3,386,830	+		IAI47_16030	0.23	+1.0
3,386,831	-		IAI47_16030	0.23	-0.8
3,386,831	-		IAI47_16030	0.23	-1.9
3,386,925	+		IAI47_16030	0.32	-0.3
3,386,926	-		IAI47_16030	0.32	-1.7
3,386,926	-		IAI47_16030	0.32	+0.9
3,386,926	-		IAI47_16030	0.32	-0.3
3,386,926	-		IAI47_16030	0.32	-0.7
3,386,926	-		IAI47_16030	0.32	-1.1
3,386,973	-		IAI47_16030	0.37	+0.5
3,386,978	+		IAI47_16030	0.38	+0.2
3,386,978	+		IAI47_16030	0.38	-0.2
3,386,979	-		IAI47_16030	0.38	-0.3
3,386,993	+		IAI47_16030	0.39	-1.1
3,386,994	-		IAI47_16030	0.39	+1.3
3,386,994	-		IAI47_16030	0.39	+2.5
3,387,071	+		IAI47_16030	0.47	-0.7
3,387,072	-		IAI47_16030	0.47	+0.2
3,387,072	-		IAI47_16030	0.47	-2.7
3,387,072	-		IAI47_16030	0.47	+0.8
3,387,103	-		IAI47_16030	0.50	+0.9
3,387,131	+		IAI47_16030	0.53	+2.1
3,387,132	-		IAI47_16030	0.53	-0.4
3,387,132	-		IAI47_16030	0.53	+0.0
3,387,209	+		IAI47_16030	0.61	-1.1
3,387,209	+		IAI47_16030	0.61	+1.5
3,387,209	+		IAI47_16030	0.61	-0.3
3,387,209	+		IAI47_16030	0.61	-0.9
3,387,210	-		IAI47_16030	0.61	+1.5
3,387,210	-		IAI47_16030	0.61	+0.4
3,387,251	+		IAI47_16030	0.65	-2.4
3,387,251	+		IAI47_16030	0.65	+1.5
3,387,251	+		IAI47_16030	0.65	-0.7
3,387,251	+		IAI47_16030	0.65	+1.1
3,387,251	+		IAI47_16030	0.65	-2.4
3,387,251	+		IAI47_16030	0.65	-1.7
3,387,252	-		IAI47_16030	0.65	-0.5
3,387,252	-		IAI47_16030	0.65	-1.4
3,387,252	-		IAI47_16030	0.65	+0.7
3,387,252	-		IAI47_16030	0.65	+0.9
3,387,269	+		IAI47_16030	0.67	+0.8
3,387,269	+		IAI47_16030	0.67	+1.3
3,387,270	-		IAI47_16030	0.67	+0.7
3,387,270	-		IAI47_16030	0.67	+1.4
3,387,299	+		IAI47_16030	0.70	+0.7
3,387,299	+		IAI47_16030	0.70	+2.0
3,387,300	-		IAI47_16030	0.70	-0.1
3,387,329	+		IAI47_16030	0.73	-0.5
3,387,329	+		IAI47_16030	0.73	+1.3
3,387,329	+		IAI47_16030	0.73	-2.0
3,387,329	+		IAI47_16030	0.73	-1.7
3,387,329	+		IAI47_16030	0.73	-0.3
3,387,330	-		IAI47_16030	0.73	-1.7
3,387,330	-		IAI47_16030	0.73	+0.3
3,387,357	+		IAI47_16030	0.76	-2.1
3,387,358	-		IAI47_16030	0.76	+0.5
3,387,394	+		IAI47_16030	0.80	-1.5
3,387,394	+		IAI47_16030	0.80	+0.5
3,387,403	+		IAI47_16030	0.81	-0.3
3,387,403	+		IAI47_16030	0.81	-1.9
3,387,404	-		IAI47_16030	0.81	+1.0
3,387,404	-		IAI47_16030	0.81	+1.8
3,387,452	+		IAI47_16030	0.86	+0.5
3,387,453	-		IAI47_16030	0.86	-1.1
3,387,453	-		IAI47_16030	0.86	-1.5
3,387,563	-				+0.5
3,387,629	+				-0.9
3,387,630	-				-0.2
3,387,651	+				+2.3
3,387,651	+				-2.2
3,387,652	-				+0.5
3,387,652	-				-1.9
3,387,695	+				+1.2
3,387,695	+				+1.6
3,387,695	+				+1.5
3,387,695	+				+2.7
3,387,696	-				-3.3
3,387,696	-				+0.4
3,387,699	+				+2.1
3,387,699	+				-1.7
3,387,699	+				+1.3
3,387,699	+				-0.3
3,387,700	-				+0.1
3,387,718	+				+1.2
3,387,718	+				-1.0
3,387,718	+				+0.3
3,387,719	-				+0.2
3,387,719	-				-2.8
3,387,719	-				+1.1
3,387,719	-				+0.1
3,387,719	-				+1.3
3,387,719	-				+1.6
3,387,719	-				-0.3
3,387,812	-		IAI47_16035	0.15	-1.1
3,387,812	-		IAI47_16035	0.15	+1.1
3,387,910	+		IAI47_16035	0.21	+2.4
3,387,910	+		IAI47_16035	0.21	-2.4
3,387,962	-		IAI47_16035	0.25	-1.3
3,387,962	-		IAI47_16035	0.25	-2.6
3,387,976	+		IAI47_16035	0.25	+1.3
3,388,059	+		IAI47_16035	0.31	-1.4
3,388,060	-		IAI47_16035	0.31	+0.1
3,388,208	+		IAI47_16035	0.40	+0.9
3,388,208	+		IAI47_16035	0.40	+1.9
3,388,208	+		IAI47_16035	0.40	-1.3
3,388,208	+		IAI47_16035	0.40	+0.4
3,388,208	+		IAI47_16035	0.40	-1.8
3,388,209	-		IAI47_16035	0.40	+1.2
3,388,209	-		IAI47_16035	0.40	-0.9
3,388,209	-		IAI47_16035	0.40	-0.9
3,388,273	+		IAI47_16035	0.44	+1.4
3,388,273	+		IAI47_16035	0.44	+0.1
3,388,273	+		IAI47_16035	0.44	-0.5
3,388,273	+		IAI47_16035	0.44	-2.1
3,388,273	+		IAI47_16035	0.44	-3.1
3,388,273	+		IAI47_16035	0.44	+3.7
3,388,274	-		IAI47_16035	0.44	+0.1
3,388,274	-		IAI47_16035	0.44	+0.1
3,388,279	+		IAI47_16035	0.44	-1.6
3,388,279	+		IAI47_16035	0.44	-1.1
3,388,279	+		IAI47_16035	0.44	+1.6
3,388,280	-		IAI47_16035	0.44	-1.6
3,388,280	-		IAI47_16035	0.44	-1.7
3,388,280	-		IAI47_16035	0.44	-0.4
3,388,301	+		IAI47_16035	0.46	-0.5
3,388,575	+		IAI47_16035	0.63	-1.5
3,388,576	-		IAI47_16035	0.63	+1.1
3,388,758	+		IAI47_16035	0.74	-1.4
3,388,758	+		IAI47_16035	0.74	-0.0
3,388,758	+		IAI47_16035	0.74	+1.4
3,388,758	+		IAI47_16035	0.74	-0.9
3,388,759	-		IAI47_16035	0.74	+1.2
3,388,797	+		IAI47_16035	0.76	-0.9
3,388,798	-		IAI47_16035	0.76	+1.2
3,388,798	-		IAI47_16035	0.76	+1.2
3,388,821	+		IAI47_16035	0.78	-1.8
3,388,823	-		IAI47_16035	0.78	-0.8
3,388,979	+		IAI47_16035	0.88	-1.4
3,388,979	+		IAI47_16035	0.88	-1.3
3,388,979	+		IAI47_16035	0.88	-1.0
3,389,048	-				-1.0
3,389,071	+				+0.5
3,389,072	-				-0.3
3,389,105	+				+0.7
3,389,105	+				+1.2
3,389,105	+				-1.2
3,389,105	+				+2.0
3,389,106	-				+1.2
3,389,106	-				-1.0
3,389,106	-				+1.7
3,389,106	-				+0.4
3,389,108	+				-0.2
3,389,108	+				-0.3
3,389,108	+				+0.2
3,389,123	+				+0.5
3,389,123	+				-1.5
3,389,124	-				-1.4
3,389,124	-				+1.5
3,389,124	-				+1.8
3,389,177	-				-1.4
3,389,186	+				-1.8
3,389,186	+				+0.1
3,389,186	+				+0.2
3,389,186	+				-1.5
3,389,187	-				-2.1
3,389,192	+				-0.1
3,389,193	-				-0.1
3,389,425	-		IAI47_16040	0.37	+0.4
3,389,425	-		IAI47_16040	0.37	-0.4
3,389,517	+		IAI47_16040	0.51	-2.2
3,389,517	+		IAI47_16040	0.51	+1.7
3,389,518	-		IAI47_16040	0.51	+0.8
3,389,704	+		IAI47_16040	0.77	+1.9
3,389,704	+		IAI47_16040	0.77	+0.8
3,389,704	+		IAI47_16040	0.77	+0.8
3,389,704	+		IAI47_16040	0.77	-0.3
3,389,704	+		IAI47_16040	0.77	-0.0
3,389,704	+		IAI47_16040	0.77	+0.1
3,389,704	+		IAI47_16040	0.77	-0.9
3,389,704	+		IAI47_16040	0.77	+0.5
3,389,704	+		IAI47_16040	0.77	-1.0
3,389,704	+		IAI47_16040	0.77	-0.5
3,389,704	+		IAI47_16040	0.77	-1.8
3,389,705	-		IAI47_16040	0.77	-3.0
3,389,705	-		IAI47_16040	0.77	-2.1
3,389,705	-		IAI47_16040	0.77	-0.6
3,389,763	+		IAI47_16040	0.86	-1.8
3,389,763	+		IAI47_16040	0.86	+0.5
3,389,764	-		IAI47_16040	0.86	+0.1
3,389,764	-		IAI47_16040	0.86	-0.5
3,389,787	-		IAI47_16040	0.89	-1.2
3,389,787	-		IAI47_16040	0.89	-1.5
3,389,861	+				-0.9
3,389,869	-				+1.3
3,390,050	+		IAI47_16045	0.24	-0.9
3,390,050	+		IAI47_16045	0.24	+0.9
3,390,050	+		IAI47_16045	0.24	+0.2
3,390,068	+		IAI47_16045	0.26	-0.8
3,390,069	-		IAI47_16045	0.26	+2.4
3,390,069	-		IAI47_16045	0.26	-2.6
3,390,089	+		IAI47_16045	0.29	-2.1
3,390,089	+		IAI47_16045	0.29	+0.5
3,390,089	+		IAI47_16045	0.29	-0.9
3,390,090	-		IAI47_16045	0.29	-1.1
3,390,090	-		IAI47_16045	0.29	+1.2
3,390,101	-		IAI47_16045	0.31	+0.2
3,390,101	-		IAI47_16045	0.31	+1.5
3,390,154	+		IAI47_16045	0.38	+0.2
3,390,154	+		IAI47_16045	0.38	-0.8
3,390,154	+		IAI47_16045	0.38	-2.8
3,390,155	-		IAI47_16045	0.38	+1.5
3,390,169	+		IAI47_16045	0.39	-1.7
3,390,169	-		IAI47_16045	0.39	+0.1