Strain Fitness in Pantoea sp. MT58 around IAI47_15225

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,210,289	+				-2.5
3,210,289	+				+0.7
3,210,289	+				+0.6
3,210,289	+				-2.3
3,210,290	-				+0.3
3,210,290	-				-1.5
3,210,290	-				-2.1
3,210,290	-				-0.0
3,210,309	+				+2.0
3,210,309	+				+2.5
3,210,327	+				-0.7
3,210,328	-				+0.7
3,210,328	-				+0.7
3,210,380	-				+0.5
3,210,385	-				+1.6
3,210,444	+		IAI47_15220	0.17	+1.0
3,210,472	+		IAI47_15220	0.21	+0.3
3,210,496	+		IAI47_15220	0.25	-2.6
3,210,563	+		IAI47_15220	0.36	+1.0
3,210,575	+		IAI47_15220	0.38	+2.0
3,210,575	+		IAI47_15220	0.38	-2.4
3,210,575	+		IAI47_15220	0.38	+0.2
3,210,575	+		IAI47_15220	0.38	-1.7
3,210,575	+		IAI47_15220	0.38	+0.4
3,210,576	-		IAI47_15220	0.38	-0.2
3,210,576	-		IAI47_15220	0.38	+1.4
3,210,576	-		IAI47_15220	0.38	-0.2
3,210,607	+		IAI47_15220	0.43	+0.3
3,210,621	+		IAI47_15220	0.45	+1.8
3,210,622	-		IAI47_15220	0.46	-1.4
3,210,622	-		IAI47_15220	0.46	+1.5
3,210,709	+		IAI47_15220	0.60	-0.7
3,210,709	+		IAI47_15220	0.60	+2.0
3,210,709	+		IAI47_15220	0.60	-0.3
3,210,709	+		IAI47_15220	0.60	-0.1
3,210,710	-		IAI47_15220	0.60	+0.3
3,210,710	-		IAI47_15220	0.60	-1.4
3,210,710	-		IAI47_15220	0.60	+0.5
3,210,747	-		IAI47_15220	0.66	-0.8
3,210,747	-		IAI47_15220	0.66	+0.9
3,210,788	+		IAI47_15220	0.73	-0.3
3,210,789	-		IAI47_15220	0.73	+1.2
3,210,789	-		IAI47_15220	0.73	+1.6
3,210,789	-		IAI47_15220	0.73	+0.9
3,210,815	+		IAI47_15220	0.77	-1.0
3,210,816	-		IAI47_15220	0.77	-0.0
3,210,816	-		IAI47_15220	0.77	+1.9
3,210,869	+		IAI47_15220	0.86	-2.0
3,210,869	+		IAI47_15220	0.86	+0.0
3,210,870	-		IAI47_15220	0.86	+3.5
3,210,870	-		IAI47_15220	0.86	+3.0
3,210,870	-		IAI47_15220	0.86	+1.4
3,210,936	+				+1.7
3,210,936	+				+2.6
3,210,936	+				+0.5
3,210,956	+				+1.5
3,210,956	+				+3.0
3,210,956	+				+0.8
3,210,957	-				+1.0
3,210,957	-				+1.0
3,210,957	-				+2.0
3,210,957	-				+1.0
3,210,957	-				+2.0
3,210,957	-				+1.9
3,210,957	-				-0.2
3,210,957	-				+0.3
3,210,957	-				+2.3
3,210,968	-				-2.0
3,210,968	-				+0.9
3,210,979	+				-1.1
3,210,979	+				+0.9
3,210,980	-				+1.4
3,210,980	-				+1.6
3,211,033	+				+0.0
3,211,034	-				-2.0
3,211,034	-				-1.0
3,211,048	+				-3.4
3,211,048	+				-0.8
3,211,048	+				+2.5
3,211,048	+				-1.4
3,211,048	+				+1.1
3,211,049	-				-1.3
3,211,049	-				+1.8
3,211,063	-				-1.0
3,211,063	-				-1.2
3,211,107	-				+1.1
3,211,120	+				+0.9
3,211,120	+				+0.5
3,211,120	+				+1.7
3,211,120	+				+1.4
3,211,120	+				+0.2
3,211,120	+				-2.0
3,211,120	+				-0.1
3,211,120	+				+1.0
3,211,120	+				-0.3
3,211,120	+				+0.3
3,211,121	-				-2.7
3,211,121	-				+1.9
3,211,121	-				+0.2
3,211,121	-				-0.8
3,211,121	-				+0.4
3,211,121	-				+1.0
3,211,121	-				-0.1
3,211,121	-				-2.1
3,211,121	-				-0.3
3,211,121	-				+1.4
3,211,121	-				+0.6
3,211,121	-				+0.0
3,211,121	-				+1.9
3,211,121	-				-0.8
3,211,121	-				-0.4
3,211,121	-				+2.6
3,211,121	-				-3.9
3,211,121	-				+2.9
3,211,121	-				-1.1
3,211,128	+				+0.5
3,211,128	+				-0.2
3,211,128	+				+0.6
3,211,128	+				-2.9
3,211,128	+				-1.7
3,211,128	+				+2.5
3,211,128	+				-1.7
3,211,129	-				-0.6
3,211,129	-				+0.7
3,211,129	-				+0.0
3,211,129	-				-0.1
3,211,129	-				+3.9
3,211,129	-				+1.1
3,211,129	-				+0.5
3,211,129	-				-2.0
3,211,129	-				-2.3
3,211,129	-				+0.5
3,211,187	+				-2.5
3,211,187	+				+0.0
3,211,215	+				-1.0
3,211,215	+				-0.5
3,211,216	-				+0.0
3,211,216	-				-1.3
3,211,216	-				-0.7
3,211,216	-				+2.2
3,211,216	-				+1.7
3,211,218	+				+3.0
3,211,219	-				+0.9
3,211,230	+				+1.4
3,211,230	+				+0.7
3,211,231	-				-1.2
3,211,231	-				-1.3
3,211,232	+				-1.0
3,211,232	+				+0.2
3,211,232	+				-0.3
3,211,233	-				+1.0
3,211,233	-				+1.2
3,211,233	-				-0.8
3,211,275	+				-0.1
3,211,319	-				+0.1
3,211,319	-				-1.4
3,211,319	-				-2.8
3,211,319	-				+1.6
3,211,329	+				+0.4
3,211,378	+				+0.8
3,211,379	-				+2.0
3,211,379	-				-0.1
3,211,379	-				+0.3
3,211,427	+		IAI47_15225	0.12	+2.4
3,211,428	-		IAI47_15225	0.12	+1.0
3,211,428	-		IAI47_15225	0.12	+1.4
3,211,448	+		IAI47_15225	0.14	+0.5
3,211,449	-		IAI47_15225	0.14	+2.2
3,211,449	-		IAI47_15225	0.14	-0.5
3,211,475	+		IAI47_15225	0.16	+1.1
3,211,476	-		IAI47_15225	0.16	+0.7
3,211,538	+		IAI47_15225	0.21	-1.3
3,211,538	+		IAI47_15225	0.21	-2.7
3,211,538	+		IAI47_15225	0.21	+0.6
3,211,538	+		IAI47_15225	0.21	+0.9
3,211,538	+		IAI47_15225	0.21	+0.6
3,211,538	+		IAI47_15225	0.21	+2.4
3,211,539	-		IAI47_15225	0.22	+2.2
3,211,539	-		IAI47_15225	0.22	+0.0
3,211,539	-		IAI47_15225	0.22	+0.7
3,211,539	-		IAI47_15225	0.22	+0.9
3,211,539	-		IAI47_15225	0.22	+0.1
3,211,545	-		IAI47_15225	0.22	-1.3
3,211,570	+		IAI47_15225	0.24	-0.8
3,211,570	+		IAI47_15225	0.24	+0.7
3,211,571	-		IAI47_15225	0.24	-0.3
3,211,571	-		IAI47_15225	0.24	-0.2
3,211,601	+		IAI47_15225	0.27	+1.9
3,211,601	+		IAI47_15225	0.27	-1.3
3,211,602	-		IAI47_15225	0.27	-1.3
3,211,661	+		IAI47_15225	0.32	+1.5
3,211,662	-		IAI47_15225	0.32	+3.3
3,211,662	-		IAI47_15225	0.32	+0.7
3,211,670	+		IAI47_15225	0.33	+1.7
3,211,670	+		IAI47_15225	0.33	-2.0
3,211,670	+		IAI47_15225	0.33	-2.1
3,211,670	+		IAI47_15225	0.33	+0.4
3,211,670	+		IAI47_15225	0.33	-1.7
3,211,670	+		IAI47_15225	0.33	+1.5
3,211,670	+		IAI47_15225	0.33	+1.0
3,211,671	-		IAI47_15225	0.33	+2.6
3,211,671	-		IAI47_15225	0.33	-1.9
3,211,671	-		IAI47_15225	0.33	+1.0
3,211,671	-		IAI47_15225	0.33	+1.3
3,211,671	-		IAI47_15225	0.33	+1.7
3,211,714	+		IAI47_15225	0.37	-1.3
3,211,715	-		IAI47_15225	0.37	-0.2
3,211,715	-		IAI47_15225	0.37	-0.4
3,211,880	+		IAI47_15225	0.51	-2.5
3,211,880	+		IAI47_15225	0.51	-2.2
3,211,881	-		IAI47_15225	0.51	+0.5
3,211,881	-		IAI47_15225	0.51	-0.3
3,211,901	+		IAI47_15225	0.53	-1.0
3,211,902	-		IAI47_15225	0.53	-1.3
3,212,005	+		IAI47_15225	0.62	+0.3
3,212,005	+		IAI47_15225	0.62	+3.0
3,212,005	+		IAI47_15225	0.62	+0.5
3,212,005	+		IAI47_15225	0.62	+2.9
3,212,005	+		IAI47_15225	0.62	+2.2
3,212,027	+		IAI47_15225	0.64	-0.2
3,212,028	-		IAI47_15225	0.64	-0.1
3,212,078	+		IAI47_15225	0.68	+1.0
3,212,078	+		IAI47_15225	0.68	-0.9
3,212,078	+		IAI47_15225	0.68	+1.1
3,212,078	+		IAI47_15225	0.68	-2.2
3,212,079	-		IAI47_15225	0.68	-1.5
3,212,079	-		IAI47_15225	0.68	-0.0
3,212,079	-		IAI47_15225	0.68	-0.1
3,212,079	-		IAI47_15225	0.68	+1.2
3,212,150	+		IAI47_15225	0.74	+0.6
3,212,150	+		IAI47_15225	0.74	-2.8
3,212,150	+		IAI47_15225	0.74	+0.5
3,212,150	+		IAI47_15225	0.74	+2.2
3,212,151	-		IAI47_15225	0.74	+0.6
3,212,151	-		IAI47_15225	0.74	-1.0
3,212,151	-		IAI47_15225	0.74	-1.5
3,212,151	-		IAI47_15225	0.74	-1.4
3,212,151	-		IAI47_15225	0.74	-0.7
3,212,151	-		IAI47_15225	0.74	-0.3
3,212,151	-		IAI47_15225	0.74	-1.1
3,212,172	-		IAI47_15225	0.76	+0.5
3,212,172	-		IAI47_15225	0.76	-0.6
3,212,172	-		IAI47_15225	0.76	+0.6
3,212,188	+		IAI47_15225	0.77	+0.7
3,212,221	+		IAI47_15225	0.80	-1.5
3,212,222	-		IAI47_15225	0.80	-2.0
3,212,222	-		IAI47_15225	0.80	+0.2
3,212,246	+		IAI47_15225	0.82	-1.8
3,212,246	+		IAI47_15225	0.82	-1.4
3,212,253	+		IAI47_15225	0.83	+1.3
3,212,254	-		IAI47_15225	0.83	-1.5
3,212,264	+		IAI47_15225	0.84	+0.5
3,212,265	-		IAI47_15225	0.84	-2.0
3,212,265	-		IAI47_15225	0.84	-2.3
3,212,265	-		IAI47_15225	0.84	+2.3
3,212,374	+				+0.9
3,212,415	+				+0.5
3,212,416	-				+0.5
3,212,416	-				-2.7
3,212,416	-				-0.5
3,212,416	-				-1.5
3,212,416	-				+0.5
3,212,416	-				+1.9
3,212,416	-				-0.5
3,212,416	-				-2.2
3,212,416	-				+1.6
3,212,436	+				-0.9
3,212,436	+				+0.2
3,212,436	+				+2.4
3,212,436	+				-1.7
3,212,437	-				-1.3
3,212,437	-				-0.3
3,212,437	-				+0.1
3,212,437	-				-2.0
3,212,437	-				+0.6
3,212,459	+				-0.4
3,212,459	+				-1.4
3,212,460	-				-0.7
3,212,460	-				-0.7
3,212,550	+		IAI47_15230	0.15	+1.5
3,212,550	+		IAI47_15230	0.15	+2.6
3,212,568	+		IAI47_15230	0.17	+1.7
3,212,569	-		IAI47_15230	0.17	+0.0
3,212,569	-		IAI47_15230	0.17	-1.4
3,212,569	-		IAI47_15230	0.17	-3.9
3,212,705	+		IAI47_15230	0.35	+3.7
3,212,749	+		IAI47_15230	0.41	-1.5
3,212,749	+		IAI47_15230	0.41	+2.9
3,212,749	+		IAI47_15230	0.41	-1.1
3,212,750	-		IAI47_15230	0.41	+1.2
3,212,750	-		IAI47_15230	0.41	+0.6
3,212,750	-		IAI47_15230	0.41	+0.3
3,212,773	-		IAI47_15230	0.44	+0.0
3,212,795	-		IAI47_15230	0.47	+0.2
3,212,861	-		IAI47_15230	0.55	+0.4
3,212,917	+		IAI47_15230	0.62	+1.2
3,212,917	+		IAI47_15230	0.62	+0.7
3,212,917	+		IAI47_15230	0.62	-1.4
3,212,917	+		IAI47_15230	0.62	+1.5
3,212,917	+		IAI47_15230	0.62	+1.4
3,212,917	+		IAI47_15230	0.62	+1.4
3,212,917	+		IAI47_15230	0.62	+3.0
3,212,917	+		IAI47_15230	0.62	+2.3
3,212,917	+		IAI47_15230	0.62	+0.1
3,212,917	+		IAI47_15230	0.62	+0.1
3,212,918	-		IAI47_15230	0.63	-1.0
3,212,918	-		IAI47_15230	0.63	-0.3
3,212,963	+		IAI47_15230	0.68	-1.0
3,212,963	+		IAI47_15230	0.68	-0.1
3,212,964	-		IAI47_15230	0.69	-1.1
3,212,995	+		IAI47_15230	0.73	+0.0
3,212,995	+		IAI47_15230	0.73	-2.5
3,212,995	+		IAI47_15230	0.73	+2.3
3,212,995	+		IAI47_15230	0.73	-1.0
3,212,996	-		IAI47_15230	0.73	+1.3
3,212,996	-		IAI47_15230	0.73	+1.4
3,212,996	-		IAI47_15230	0.73	+1.9
3,212,996	-		IAI47_15230	0.73	+0.5
3,213,009	+		IAI47_15230	0.74	-1.8
3,213,043	+		IAI47_15230	0.79	+0.1
3,213,043	+		IAI47_15230	0.79	+2.2
3,213,043	+		IAI47_15230	0.79	-1.9
3,213,043	+		IAI47_15230	0.79	+0.0
3,213,044	-		IAI47_15230	0.79	+0.5
3,213,064	-		IAI47_15230	0.82	+2.8
3,213,064	-		IAI47_15230	0.82	-2.9
3,213,155	-				+0.0
3,213,202	+				+1.8
3,213,218	-				+0.9
3,213,320	-		IAI47_15235	0.31	+1.8
3,213,320	-		IAI47_15235	0.31	+2.3
3,213,320	-		IAI47_15235	0.31	+1.6
3,213,349	+		IAI47_15235	0.40	+1.7
3,213,350	-		IAI47_15235	0.40	-1.1
3,213,350	-		IAI47_15235	0.40	-0.1
3,213,376	+		IAI47_15235	0.48	-0.3
3,213,377	-		IAI47_15235	0.48	+3.2
3,213,377	-		IAI47_15235	0.48	-2.1