Strain Fitness in Pantoea sp. MT58 around IAI47_12535

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,639,505	-		IAI47_12525	0.61	+0.2
2,639,817	+				-1.9
2,639,817	+				-0.1
2,639,838	+				-0.8
2,639,838	+				-0.8
2,639,838	+				-1.6
2,639,838	+				+0.4
2,639,838	+				+2.1
2,639,839	-				-1.1
2,639,839	-				+0.9
2,639,839	-				-1.5
2,639,839	-				-1.4
2,639,856	+				-0.5
2,639,922	+		IAI47_12530	0.16	-0.7
2,639,922	+		IAI47_12530	0.16	-2.5
2,639,922	+		IAI47_12530	0.16	-1.8
2,639,922	+		IAI47_12530	0.16	+0.5
2,639,922	+		IAI47_12530	0.16	-1.4
2,639,922	+		IAI47_12530	0.16	-0.5
2,639,922	+		IAI47_12530	0.16	-1.2
2,639,923	-		IAI47_12530	0.16	-1.9
2,639,923	-		IAI47_12530	0.16	-0.9
2,639,923	-		IAI47_12530	0.16	-0.4
2,639,923	-		IAI47_12530	0.16	+1.7
2,639,925	+		IAI47_12530	0.17	-2.1
2,639,925	+		IAI47_12530	0.17	+0.1
2,639,925	+		IAI47_12530	0.17	+1.3
2,639,925	+		IAI47_12530	0.17	+1.4
2,639,925	+		IAI47_12530	0.17	-2.3
2,639,925	+		IAI47_12530	0.17	+1.7
2,639,925	+		IAI47_12530	0.17	-0.9
2,639,925	+		IAI47_12530	0.17	-0.1
2,639,925	+		IAI47_12530	0.17	+1.2
2,639,925	+		IAI47_12530	0.17	+2.6
2,639,926	-		IAI47_12530	0.17	-1.3
2,639,926	-		IAI47_12530	0.17	-0.9
2,639,926	-		IAI47_12530	0.17	+0.8
2,639,958	+		IAI47_12530	0.23	-1.5
2,640,035	-		IAI47_12530	0.38	+2.1
2,640,041	+		IAI47_12530	0.39	-0.7
2,640,041	+		IAI47_12530	0.39	-0.4
2,640,041	+		IAI47_12530	0.39	-0.2
2,640,041	+		IAI47_12530	0.39	-1.6
2,640,042	-		IAI47_12530	0.39	+1.5
2,640,042	-		IAI47_12530	0.39	+0.7
2,640,216	+		IAI47_12530	0.73	-1.1
2,640,216	+		IAI47_12530	0.73	+2.2
2,640,216	+		IAI47_12530	0.73	-2.4
2,640,217	-		IAI47_12530	0.73	+2.2
2,640,241	-		IAI47_12530	0.78	+0.9
2,640,241	-		IAI47_12530	0.78	+2.6
2,640,282	+		IAI47_12530	0.86	+0.1
2,640,282	+		IAI47_12530	0.86	-1.5
2,640,283	-		IAI47_12530	0.86	-0.2
2,640,291	+		IAI47_12530	0.88	-0.9
2,640,323	-				+1.8
2,640,353	-				-1.5
2,640,366	-				+1.2
2,640,395	+				+1.9
2,640,445	-				-1.1
2,640,457	+				+0.2
2,640,457	+				-2.0
2,640,458	-				+0.2
2,640,458	-				+2.3
2,640,458	-				+0.7
2,640,460	+				+1.3
2,640,461	-				+1.7
2,640,461	-				+1.9
2,640,510	+				-1.1
2,640,510	+				+1.1
2,640,510	+				+0.9
2,640,511	-				-0.3
2,640,622	+		IAI47_12535	0.17	+0.9
2,640,622	+		IAI47_12535	0.17	+1.6
2,640,625	+		IAI47_12535	0.17	+0.8
2,640,626	-		IAI47_12535	0.17	+1.5
2,640,647	+		IAI47_12535	0.19	-1.8
2,640,647	+		IAI47_12535	0.19	+0.6
2,640,647	+		IAI47_12535	0.19	-0.1
2,640,647	+		IAI47_12535	0.19	+0.4
2,640,647	+		IAI47_12535	0.19	+2.5
2,640,648	-		IAI47_12535	0.19	+0.4
2,640,648	-		IAI47_12535	0.19	-1.8
2,640,648	-		IAI47_12535	0.19	+0.5
2,640,648	-		IAI47_12535	0.19	+0.5
2,640,648	-		IAI47_12535	0.19	+1.9
2,640,767	+		IAI47_12535	0.28	+3.2
2,640,789	+		IAI47_12535	0.29	-2.3
2,640,790	-		IAI47_12535	0.29	+0.8
2,640,946	+		IAI47_12535	0.41	+0.3
2,640,967	+		IAI47_12535	0.43	-1.9
2,641,028	+		IAI47_12535	0.47	+3.3
2,641,028	+		IAI47_12535	0.47	+1.1
2,641,028	+		IAI47_12535	0.47	-0.3
2,641,029	-		IAI47_12535	0.47	-1.8
2,641,029	-		IAI47_12535	0.47	+0.6
2,641,029	-		IAI47_12535	0.47	-0.0
2,641,076	-		IAI47_12535	0.51	+4.2
2,641,076	-		IAI47_12535	0.51	-1.4
2,641,241	+		IAI47_12535	0.63	+1.9
2,641,241	+		IAI47_12535	0.63	+0.7
2,641,241	+		IAI47_12535	0.63	+1.1
2,641,241	+		IAI47_12535	0.63	+0.1
2,641,241	+		IAI47_12535	0.63	-0.2
2,641,242	-		IAI47_12535	0.63	-2.4
2,641,242	-		IAI47_12535	0.63	+2.4
2,641,242	-		IAI47_12535	0.63	+0.9
2,641,242	-		IAI47_12535	0.63	-1.4
2,641,242	-		IAI47_12535	0.63	-2.2
2,641,242	-		IAI47_12535	0.63	-1.1
2,641,242	-		IAI47_12535	0.63	-1.8
2,641,242	-		IAI47_12535	0.63	-0.1
2,641,242	-		IAI47_12535	0.63	-1.8
2,641,320	-		IAI47_12535	0.69	-1.0
2,641,320	-		IAI47_12535	0.69	+1.3
2,641,320	-		IAI47_12535	0.69	+0.9
2,641,320	-		IAI47_12535	0.69	+2.6
2,641,320	-		IAI47_12535	0.69	+1.2
2,641,320	-		IAI47_12535	0.69	+0.1
2,641,320	-		IAI47_12535	0.69	-0.6
2,641,320	-		IAI47_12535	0.69	+1.0
2,641,330	+		IAI47_12535	0.70	-1.8
2,641,351	+		IAI47_12535	0.71	+3.5
2,641,351	+		IAI47_12535	0.71	-1.2
2,641,351	+		IAI47_12535	0.71	+1.2
2,641,351	+		IAI47_12535	0.71	+0.5
2,641,455	+		IAI47_12535	0.79	-1.5
2,641,455	+		IAI47_12535	0.79	+0.4
2,641,455	+		IAI47_12535	0.79	+0.4
2,641,455	+		IAI47_12535	0.79	-0.2
2,641,456	-		IAI47_12535	0.79	-1.6
2,641,537	-		IAI47_12535	0.85	+0.9
2,641,537	-		IAI47_12535	0.85	+1.2
2,641,559	-		IAI47_12535	0.87	+0.8
2,641,559	-		IAI47_12535	0.87	-1.3
2,641,567	+		IAI47_12535	0.88	-1.0
2,641,728	-				-1.5
2,641,731	+				-2.0
2,641,731	+				-1.2
2,641,731	+				-1.4
2,641,732	-				+3.2
2,641,732	-				-0.4
2,641,732	-				+0.3
2,641,748	+				-1.4
2,641,749	-				-1.2
2,641,858	+		IAI47_12540	0.14	-0.0
2,641,858	+		IAI47_12540	0.14	+0.1
2,641,858	+		IAI47_12540	0.14	-1.0
2,641,858	+		IAI47_12540	0.14	+1.2
2,641,859	-		IAI47_12540	0.14	+0.2
2,641,859	-		IAI47_12540	0.14	-1.4
2,641,859	-		IAI47_12540	0.14	-2.0
2,641,859	-		IAI47_12540	0.14	+1.0
2,641,865	+		IAI47_12540	0.15	+0.9
2,641,865	+		IAI47_12540	0.15	+0.2
2,641,865	+		IAI47_12540	0.15	-2.4
2,641,865	+		IAI47_12540	0.15	-0.4
2,641,865	+		IAI47_12540	0.15	-3.2
2,641,866	-		IAI47_12540	0.15	+0.7
2,641,866	-		IAI47_12540	0.15	-0.0
2,641,866	-		IAI47_12540	0.15	-2.0
2,641,866	-		IAI47_12540	0.15	-1.5
2,641,868	+		IAI47_12540	0.15	-0.4
2,641,868	+		IAI47_12540	0.15	-1.0
2,641,869	-		IAI47_12540	0.15	-0.1
2,641,896	+		IAI47_12540	0.18	-2.1
2,641,896	+		IAI47_12540	0.18	+2.3
2,641,897	-		IAI47_12540	0.18	-0.5
2,641,901	+		IAI47_12540	0.19	+0.9
2,641,901	+		IAI47_12540	0.19	+1.2
2,641,902	-		IAI47_12540	0.19	+0.7
2,642,009	+		IAI47_12540	0.30	-1.5
2,642,009	+		IAI47_12540	0.30	+1.4
2,642,010	-		IAI47_12540	0.31	-2.9
2,642,115	+		IAI47_12540	0.42	+1.1
2,642,171	+		IAI47_12540	0.48	+4.7
2,642,172	-		IAI47_12540	0.48	+2.1
2,642,192	-		IAI47_12540	0.50	-0.9
2,642,194	+		IAI47_12540	0.51	+0.0
2,642,195	-		IAI47_12540	0.51	-0.2
2,642,195	-		IAI47_12540	0.51	-0.0
2,642,195	-		IAI47_12540	0.51	-0.9
2,642,195	-		IAI47_12540	0.51	-0.2
2,642,195	-		IAI47_12540	0.51	-1.4
2,642,216	+		IAI47_12540	0.53	-1.4
2,642,225	+		IAI47_12540	0.54	+1.0
2,642,225	+		IAI47_12540	0.54	+0.8
2,642,226	-		IAI47_12540	0.54	-1.4
2,642,226	-		IAI47_12540	0.54	-1.7
2,642,282	+		IAI47_12540	0.60	-2.4
2,642,282	+		IAI47_12540	0.60	+0.4
2,642,297	+		IAI47_12540	0.62	+0.7
2,642,297	+		IAI47_12540	0.62	-0.9
2,642,297	+		IAI47_12540	0.62	+2.2
2,642,298	-		IAI47_12540	0.62	-0.0
2,642,298	-		IAI47_12540	0.62	-1.0
2,642,298	-		IAI47_12540	0.62	+2.1
2,642,319	+		IAI47_12540	0.64	-2.2
2,642,319	+		IAI47_12540	0.64	+1.3
2,642,320	-		IAI47_12540	0.64	-1.2
2,642,320	-		IAI47_12540	0.64	+1.0
2,642,408	+		IAI47_12540	0.74	-1.0
2,642,409	-		IAI47_12540	0.74	-0.9
2,642,409	-		IAI47_12540	0.74	-0.4
2,642,480	+		IAI47_12540	0.82	+1.0
2,642,581	+				+1.6
2,642,582	-				+3.0
2,642,582	-				+0.1
2,642,588	+				-1.2
2,642,588	+				-0.2
2,642,589	-				+2.0
2,642,591	+				-1.2
2,642,592	-				+0.4
2,642,592	-				-1.2
2,642,592	-				-0.6
2,642,622	-				+0.6
2,642,622	-				-0.9
2,642,644	+				-0.3
2,642,644	+				-1.0
2,642,644	+				+0.6
2,642,645	-				+0.8
2,642,645	-				-2.5
2,642,672	+				-0.9
2,642,672	+				+0.1
2,642,673	-				+1.5
2,642,673	-				-0.3
2,642,673	-				-2.3