Strain Fitness in Pantoea sp. MT58 around IAI47_08475

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,792,687	+		IAI47_08470	0.37	-0.5
1,792,687	+		IAI47_08470	0.37	-1.7
1,792,687	+		IAI47_08470	0.37	+1.2
1,792,688	-		IAI47_08470	0.37	+2.8
1,792,688	-		IAI47_08470	0.37	-2.4
1,792,688	-		IAI47_08470	0.37	-1.0
1,792,688	-		IAI47_08470	0.37	+0.6
1,792,688	-		IAI47_08470	0.37	-1.5
1,792,714	-		IAI47_08470	0.39	-0.0
1,792,714	-		IAI47_08470	0.39	-0.5
1,792,757	+		IAI47_08470	0.43	+0.4
1,792,757	+		IAI47_08470	0.43	-1.4
1,792,757	+		IAI47_08470	0.43	+0.3
1,792,758	-		IAI47_08470	0.43	-0.8
1,792,758	-		IAI47_08470	0.43	-1.7
1,792,758	-		IAI47_08470	0.43	-1.7
1,792,926	+		IAI47_08470	0.55	-0.3
1,792,927	-		IAI47_08470	0.55	+0.3
1,792,927	-		IAI47_08470	0.55	+0.2
1,792,927	-		IAI47_08470	0.55	-0.3
1,792,965	+		IAI47_08470	0.58	+1.2
1,792,966	-		IAI47_08470	0.58	-0.8
1,792,981	+		IAI47_08470	0.59	-0.8
1,792,981	+		IAI47_08470	0.59	-1.1
1,792,981	+		IAI47_08470	0.59	-0.2
1,792,982	-		IAI47_08470	0.60	-0.8
1,792,982	-		IAI47_08470	0.60	-2.1
1,792,984	+		IAI47_08470	0.60	-1.0
1,792,984	+		IAI47_08470	0.60	-0.2
1,792,984	+		IAI47_08470	0.60	-2.1
1,792,985	-		IAI47_08470	0.60	-1.3
1,793,014	+		IAI47_08470	0.62	-1.7
1,793,014	+		IAI47_08470	0.62	+0.6
1,793,049	+		IAI47_08470	0.65	+1.8
1,793,067	+		IAI47_08470	0.66	-1.9
1,793,067	+		IAI47_08470	0.66	+0.6
1,793,095	-		IAI47_08470	0.68	-0.2
1,793,109	+		IAI47_08470	0.69	-2.1
1,793,109	+		IAI47_08470	0.69	+0.8
1,793,109	+		IAI47_08470	0.69	+0.7
1,793,140	-		IAI47_08470	0.71	+0.6
1,793,169	+		IAI47_08470	0.74	+1.2
1,793,236	+		IAI47_08470	0.79	-0.9
1,793,236	+		IAI47_08470	0.79	+0.6
1,793,236	+		IAI47_08470	0.79	+0.7
1,793,236	+		IAI47_08470	0.79	+0.2
1,793,236	+		IAI47_08470	0.79	+2.9
1,793,236	+		IAI47_08470	0.79	+0.7
1,793,236	+		IAI47_08470	0.79	-1.2
1,793,236	+		IAI47_08470	0.79	-0.4
1,793,236	+		IAI47_08470	0.79	-2.4
1,793,236	+		IAI47_08470	0.79	+0.5
1,793,236	+		IAI47_08470	0.79	+1.0
1,793,236	+		IAI47_08470	0.79	-0.2
1,793,236	+		IAI47_08470	0.79	+0.8
1,793,236	+		IAI47_08470	0.79	-2.4
1,793,236	+		IAI47_08470	0.79	+4.6
1,793,236	+		IAI47_08470	0.79	-0.2
1,793,236	+		IAI47_08470	0.79	-0.6
1,793,236	+		IAI47_08470	0.79	-1.5
1,793,236	+		IAI47_08470	0.79	-2.6
1,793,236	+		IAI47_08470	0.79	-0.7
1,793,237	-		IAI47_08470	0.79	+0.2
1,793,237	-		IAI47_08470	0.79	+0.5
1,793,237	-		IAI47_08470	0.79	+0.2
1,793,237	-		IAI47_08470	0.79	-1.4
1,793,237	-		IAI47_08470	0.79	-0.8
1,793,237	-		IAI47_08470	0.79	-1.2
1,793,237	-		IAI47_08470	0.79	+0.6
1,793,237	-		IAI47_08470	0.79	-1.5
1,793,237	-		IAI47_08470	0.79	+0.7
1,793,240	+		IAI47_08470	0.79	-1.0
1,793,240	+		IAI47_08470	0.79	+1.7
1,793,240	+		IAI47_08470	0.79	-0.3
1,793,240	+		IAI47_08470	0.79	+0.9
1,793,240	+		IAI47_08470	0.79	-1.0
1,793,240	+		IAI47_08470	0.79	+0.8
1,793,240	+		IAI47_08470	0.79	-1.5
1,793,241	-		IAI47_08470	0.79	+1.1
1,793,241	-		IAI47_08470	0.79	-1.3
1,793,241	-		IAI47_08470	0.79	-1.4
1,793,241	-		IAI47_08470	0.79	-0.2
1,793,241	-		IAI47_08470	0.79	-0.4
1,793,241	-		IAI47_08470	0.79	-0.1
1,793,241	-		IAI47_08470	0.79	-2.8
1,793,241	-		IAI47_08470	0.79	+0.0
1,793,241	-		IAI47_08470	0.79	-2.1
1,793,241	-		IAI47_08470	0.79	-1.5
1,793,241	-		IAI47_08470	0.79	-2.6
1,793,241	-		IAI47_08470	0.79	+0.0
1,793,241	-		IAI47_08470	0.79	+0.8
1,793,244	+		IAI47_08470	0.79	+0.6
1,793,245	-		IAI47_08470	0.79	-0.6
1,793,263	+		IAI47_08470	0.81	-0.1
1,793,263	+		IAI47_08470	0.81	-1.2
1,793,263	+		IAI47_08470	0.81	-1.5
1,793,263	+		IAI47_08470	0.81	-1.4
1,793,263	+		IAI47_08470	0.81	+2.7
1,793,264	-		IAI47_08470	0.81	-0.0
1,793,264	-		IAI47_08470	0.81	+1.8
1,793,264	-		IAI47_08470	0.81	-0.1
1,793,264	-		IAI47_08470	0.81	+1.2
1,793,264	-		IAI47_08470	0.81	-0.4
1,793,265	+		IAI47_08470	0.81	+0.7
1,793,265	+		IAI47_08470	0.81	-2.2
1,793,265	+		IAI47_08470	0.81	-1.3
1,793,265	+		IAI47_08470	0.81	+0.7
1,793,266	-		IAI47_08470	0.81	+0.3
1,793,266	-		IAI47_08470	0.81	-0.8
1,793,266	-		IAI47_08470	0.81	+0.6
1,793,266	-		IAI47_08470	0.81	-0.7
1,793,266	-		IAI47_08470	0.81	-1.7
1,793,275	+		IAI47_08470	0.82	+0.2
1,793,275	+		IAI47_08470	0.82	-0.0
1,793,276	-		IAI47_08470	0.82	+2.2
1,793,276	-		IAI47_08470	0.82	+1.3
1,793,276	-		IAI47_08470	0.82	+1.1
1,793,276	-		IAI47_08470	0.82	-1.9
1,793,276	-		IAI47_08470	0.82	+0.8
1,793,276	-		IAI47_08470	0.82	+0.5
1,793,277	+		IAI47_08470	0.82	-1.4
1,793,277	+		IAI47_08470	0.82	+2.1
1,793,277	+		IAI47_08470	0.82	+2.4
1,793,277	+		IAI47_08470	0.82	-0.0
1,793,278	-		IAI47_08470	0.82	+2.5
1,793,278	-		IAI47_08470	0.82	+1.3
1,793,278	-		IAI47_08470	0.82	-2.7
1,793,278	-		IAI47_08470	0.82	-0.1
1,793,278	-		IAI47_08470	0.82	-1.2
1,793,278	-		IAI47_08470	0.82	-1.0
1,793,278	-		IAI47_08470	0.82	+0.1
1,793,334	+		IAI47_08470	0.86	+0.7
1,793,350	-		IAI47_08470	0.87	+0.8
1,793,473	+				-2.2
1,793,473	+				-0.5
1,793,473	+				+0.6
1,793,473	+				-0.3
1,793,473	+				-0.2
1,793,473	+				+0.2
1,793,473	+				+0.4
1,793,474	-				+1.9
1,793,474	-				+1.7
1,793,474	-				+1.1
1,793,474	-				+2.6
1,793,474	-				-1.7
1,793,475	+				+0.8
1,793,475	+				+0.8
1,793,475	+				+1.0
1,793,475	+				+2.2
1,793,475	+				-1.4
1,793,475	+				-0.1
1,793,476	-				-1.9
1,793,575	-				-1.4
1,793,613	+				+1.4
1,793,618	+				+1.5
1,793,618	+				+1.1
1,793,618	+				+1.1
1,794,618	+				+0.7
1,794,618	+				-2.4
1,794,684	+				+1.6
1,794,684	+				+1.3
1,794,685	-				+0.3
1,794,690	+				+2.0
1,794,690	+				-0.4
1,794,690	+				-0.5
1,794,690	+				-0.8
1,794,690	+				-1.1
1,794,690	+				-0.2
1,794,690	+				+2.0
1,794,690	+				-0.2
1,794,691	-				-2.3
1,794,691	-				+2.8
1,794,747	+				+0.8
1,794,747	+				+1.8
1,794,747	+				-0.2
1,794,747	+				-0.8
1,794,747	+				-1.4
1,794,747	+				+0.8
1,794,747	+				-2.4
1,794,748	-				-0.5
1,794,748	-				+2.3
1,794,748	-				+0.7
1,794,749	+				-0.6
1,794,749	+				+0.1
1,794,750	-				-0.2
1,794,775	+				+1.9
1,794,776	-				+1.2
1,794,776	-				+0.6
1,794,787	+				+1.8
1,794,788	-				-2.2
1,794,788	-				-2.7
1,794,797	-				-1.9
1,794,826	+				-2.4
1,794,833	-				-3.3
1,794,867	+				+1.2
1,794,910	+		IAI47_08480	0.13	-0.7
1,794,910	+		IAI47_08480	0.13	+0.1
1,794,910	+		IAI47_08480	0.13	-0.0
1,794,911	-		IAI47_08480	0.13	+1.8
1,794,920	-		IAI47_08480	0.14	-2.0
1,794,940	+		IAI47_08480	0.16	+0.5
1,794,941	-		IAI47_08480	0.16	-0.1
1,794,946	+		IAI47_08480	0.16	-1.0
1,794,946	+		IAI47_08480	0.16	+3.4
1,794,947	-		IAI47_08480	0.16	-1.4
1,794,947	-		IAI47_08480	0.16	+0.1
1,794,955	+		IAI47_08480	0.17	-0.8
1,794,956	-		IAI47_08480	0.17	+2.1
1,794,963	+		IAI47_08480	0.18	-1.8
1,794,979	-		IAI47_08480	0.19	-0.2
1,794,992	+		IAI47_08480	0.20	-1.4
1,794,993	-		IAI47_08480	0.20	+2.0
1,794,993	-		IAI47_08480	0.20	-0.7
1,794,993	-		IAI47_08480	0.20	-0.7
1,794,993	-		IAI47_08480	0.20	+1.4
1,795,014	+		IAI47_08480	0.22	-0.9
1,795,044	+		IAI47_08480	0.24	+1.5
1,795,044	+		IAI47_08480	0.24	-0.5
1,795,044	+		IAI47_08480	0.24	+1.8
1,795,045	-		IAI47_08480	0.24	+0.6
1,795,045	-		IAI47_08480	0.24	+0.4
1,795,045	-		IAI47_08480	0.24	+1.1
1,795,048	+		IAI47_08480	0.24	+0.8
1,795,048	+		IAI47_08480	0.24	+2.9
1,795,048	+		IAI47_08480	0.24	+2.5
1,795,048	+		IAI47_08480	0.24	+1.8
1,795,048	+		IAI47_08480	0.24	+1.4
1,795,048	+		IAI47_08480	0.24	-2.4
1,795,048	+		IAI47_08480	0.24	+0.7
1,795,048	+		IAI47_08480	0.24	-0.5
1,795,049	-		IAI47_08480	0.25	+0.5
1,795,049	-		IAI47_08480	0.25	+0.8
1,795,049	-		IAI47_08480	0.25	-1.5
1,795,049	-		IAI47_08480	0.25	+0.1
1,795,049	-		IAI47_08480	0.25	-0.8
1,795,049	-		IAI47_08480	0.25	+1.0
1,795,049	-		IAI47_08480	0.25	-1.5
1,795,049	-		IAI47_08480	0.25	+1.5
1,795,049	-		IAI47_08480	0.25	+0.6
1,795,049	-		IAI47_08480	0.25	+0.8
1,795,153	+		IAI47_08480	0.33	+0.6
1,795,154	-		IAI47_08480	0.33	-1.2
1,795,154	-		IAI47_08480	0.33	+0.2
1,795,154	-		IAI47_08480	0.33	-0.7
1,795,212	+		IAI47_08480	0.38	+2.3
1,795,213	-		IAI47_08480	0.38	-0.5
1,795,213	-		IAI47_08480	0.38	-1.4
1,795,213	-		IAI47_08480	0.38	-0.4
1,795,285	+		IAI47_08480	0.44	-2.5
1,795,285	+		IAI47_08480	0.44	-3.1
1,795,347	+		IAI47_08480	0.49	-1.7
1,795,347	+		IAI47_08480	0.49	+0.4
1,795,348	-		IAI47_08480	0.49	-1.4
1,795,348	-		IAI47_08480	0.49	-0.8
1,795,348	-		IAI47_08480	0.49	-0.0
1,795,376	-		IAI47_08480	0.51	-2.7
1,795,376	-		IAI47_08480	0.51	-1.9
1,795,535	+		IAI47_08480	0.64	-2.2
1,795,536	-		IAI47_08480	0.64	-0.8
1,795,536	-		IAI47_08480	0.64	-0.5
1,795,536	-		IAI47_08480	0.64	-1.2
1,795,602	+		IAI47_08480	0.69	-2.4
1,795,602	+		IAI47_08480	0.69	-0.7