Strain Fitness in Pantoea sp. MT58 around IAI47_04585

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04575 and IAI47_04580 are separated by 255 nucleotidesIAI47_04580 and IAI47_04585 overlap by 8 nucleotidesIAI47_04585 and IAI47_04590 overlap by 11 nucleotidesIAI47_04590 and IAI47_04595 overlap by 4 nucleotides IAI47_04575: IAI47_04575 - spermidine N1-acetyltransferase, at 962,590 to 963,135 _04575 IAI47_04580: IAI47_04580 - ABC transporter ATP-binding protein, at 963,391 to 964,068 _04580 IAI47_04585: IAI47_04585 - ABC transporter ATP-binding protein, at 964,061 to 964,891 _04585 IAI47_04590: IAI47_04590 - ABC transporter permease, at 964,881 to 965,738 _04590 IAI47_04595: IAI47_04595 - ABC transporter permease, at 965,735 to 966,787 _04595 Position (kb) 964 965Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 963.075 kb on + strand, within IAI47_04575at 963.128 kb on - strandat 963.128 kb on - strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.157 kb on - strandat 963.157 kb on - strandat 963.157 kb on - strandat 963.171 kb on + strandat 963.172 kb on - strandat 963.207 kb on + strandat 963.207 kb on + strandat 963.207 kb on + strandat 963.208 kb on - strandat 963.209 kb on + strandat 963.209 kb on + strandat 963.209 kb on + strandat 963.210 kb on - strandat 963.210 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.229 kb on - strandat 963.240 kb on + strandat 963.241 kb on - strandat 963.246 kb on - strandat 963.309 kb on - strandat 963.309 kb on - strandat 963.319 kb on - strandat 963.319 kb on - strandat 963.319 kb on - strandat 963.450 kb on + strandat 963.450 kb on + strandat 963.450 kb on + strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.459 kb on + strand, within IAI47_04580at 963.552 kb on + strand, within IAI47_04580at 963.552 kb on + strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580at 963.712 kb on - strand, within IAI47_04580at 963.712 kb on - strand, within IAI47_04580at 963.723 kb on + strand, within IAI47_04580at 963.724 kb on - strand, within IAI47_04580at 963.724 kb on - strand, within IAI47_04580at 963.724 kb on - strand, within IAI47_04580at 963.724 kb on - strand, within IAI47_04580at 963.797 kb on + strand, within IAI47_04580at 963.797 kb on + strand, within IAI47_04580at 963.797 kb on + strand, within IAI47_04580at 963.798 kb on - strand, within IAI47_04580at 963.798 kb on - strand, within IAI47_04580at 963.798 kb on - strand, within IAI47_04580at 963.867 kb on + strand, within IAI47_04580at 963.868 kb on - strand, within IAI47_04580at 963.868 kb on - strand, within IAI47_04580at 963.868 kb on - strand, within IAI47_04580at 963.868 kb on - strand, within IAI47_04580at 963.996 kb on + strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 964.025 kb on + strandat 964.026 kb on - strandat 964.026 kb on - strandat 964.026 kb on - strandat 964.057 kb on + strandat 964.057 kb on + strandat 964.057 kb on + strandat 964.058 kb on - strandat 964.058 kb on - strandat 964.069 kb on - strandat 964.069 kb on - strandat 964.103 kb on + strandat 964.104 kb on - strandat 964.104 kb on - strandat 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.198 kb on + strand, within IAI47_04585at 964.218 kb on + strand, within IAI47_04585at 964.218 kb on + strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.594 kb on + strand, within IAI47_04585at 964.594 kb on + strand, within IAI47_04585at 964.595 kb on - strand, within IAI47_04585at 964.595 kb on - strand, within IAI47_04585at 964.602 kb on + strand, within IAI47_04585at 964.602 kb on + strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.882 kb on + strandat 964.883 kb on - strandat 964.934 kb on + strandat 965.093 kb on + strand, within IAI47_04590at 965.154 kb on - strand, within IAI47_04590at 965.154 kb on - strand, within IAI47_04590at 965.165 kb on + strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.210 kb on - strand, within IAI47_04590at 965.469 kb on + strand, within IAI47_04590at 965.470 kb on - strand, within IAI47_04590at 965.707 kb on - strandat 965.765 kb on + strandat 965.765 kb on + strandat 965.785 kb on + strandat 965.786 kb on - strandat 965.866 kb on + strand, within IAI47_04595at 965.866 kb on + strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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963,075 + IAI47_04575 0.89 +1.0
963,128 - -0.7
963,128 - +0.4
963,156 + -0.3
963,156 + -1.7
963,156 + -0.4
963,156 + +0.9
963,157 - -0.9
963,157 - -0.0
963,157 - +2.0
963,171 + +1.6
963,172 - +1.0
963,207 + -0.0
963,207 + -0.3
963,207 + -0.1
963,208 - -0.8
963,209 + -3.3
963,209 + -1.0
963,209 + -0.8
963,210 - -1.2
963,210 - +1.6
963,224 - -1.0
963,224 - -2.1
963,228 + +1.7
963,228 + -2.3
963,228 + +0.9
963,228 + +1.5
963,229 - -1.0
963,240 + +0.6
963,241 - -1.2
963,246 - -1.2
963,309 - +3.6
963,309 - +2.0
963,319 - -1.7
963,319 - +0.1
963,319 - -1.3
963,450 + +0.3
963,450 + -0.5
963,450 + -0.6
963,451 - -0.3
963,451 - -2.9
963,451 - -0.8
963,451 - -1.1
963,451 - +0.0
963,459 + IAI47_04580 0.10 -1.1
963,552 + IAI47_04580 0.24 -2.0
963,552 + IAI47_04580 0.24 -0.8
963,553 - IAI47_04580 0.24 -0.3
963,553 - IAI47_04580 0.24 +2.0
963,553 - IAI47_04580 0.24 +0.6
963,712 - IAI47_04580 0.47 -0.8
963,712 - IAI47_04580 0.47 +1.1
963,723 + IAI47_04580 0.49 -1.5
963,724 - IAI47_04580 0.49 +1.3
963,724 - IAI47_04580 0.49 +1.0
963,724 - IAI47_04580 0.49 +1.2
963,724 - IAI47_04580 0.49 +0.5
963,797 + IAI47_04580 0.60 -2.1
963,797 + IAI47_04580 0.60 +3.7
963,797 + IAI47_04580 0.60 -1.0
963,798 - IAI47_04580 0.60 -2.3
963,798 - IAI47_04580 0.60 +0.3
963,798 - IAI47_04580 0.60 -2.2
963,867 + IAI47_04580 0.70 +3.0
963,868 - IAI47_04580 0.70 +1.8
963,868 - IAI47_04580 0.70 +0.1
963,868 - IAI47_04580 0.70 -0.0
963,868 - IAI47_04580 0.70 +1.3
963,996 + IAI47_04580 0.89 -1.5
963,997 - IAI47_04580 0.89 -0.7
963,997 - IAI47_04580 0.89 -1.1
963,997 - IAI47_04580 0.89 +0.8
964,025 + +1.0
964,026 - -2.1
964,026 - -0.4
964,026 - +2.1
964,057 + -1.8
964,057 + +0.7
964,057 + +1.2
964,058 - -2.9
964,058 - -0.1
964,069 - -2.3
964,069 - +0.9
964,103 + +2.8
964,104 - -0.0
964,104 - -1.9
964,158 + IAI47_04585 0.12 -0.8
964,158 + IAI47_04585 0.12 -1.0
964,158 + IAI47_04585 0.12 -3.1
964,158 + IAI47_04585 0.12 -0.7
964,158 + IAI47_04585 0.12 -0.7
964,158 + IAI47_04585 0.12 +1.4
964,159 - IAI47_04585 0.12 -0.2
964,159 - IAI47_04585 0.12 -2.8
964,159 - IAI47_04585 0.12 -1.9
964,159 - IAI47_04585 0.12 -1.7
964,159 - IAI47_04585 0.12 +0.3
964,198 + IAI47_04585 0.16 -0.3
964,218 + IAI47_04585 0.19 -2.3
964,218 + IAI47_04585 0.19 +1.0
964,219 - IAI47_04585 0.19 -2.1
964,219 - IAI47_04585 0.19 +0.5
964,219 - IAI47_04585 0.19 -0.3
964,219 - IAI47_04585 0.19 -0.1
964,219 - IAI47_04585 0.19 -0.3
964,219 - IAI47_04585 0.19 -0.0
964,219 - IAI47_04585 0.19 -0.3
964,219 - IAI47_04585 0.19 -2.5
964,219 - IAI47_04585 0.19 -3.4
964,219 - IAI47_04585 0.19 -3.0
964,291 + IAI47_04585 0.28 +0.2
964,291 + IAI47_04585 0.28 +0.3
964,291 + IAI47_04585 0.28 +1.5
964,291 + IAI47_04585 0.28 -0.8
964,291 + IAI47_04585 0.28 +0.6
964,594 + IAI47_04585 0.64 +1.2
964,594 + IAI47_04585 0.64 +0.2
964,595 - IAI47_04585 0.64 +0.5
964,595 - IAI47_04585 0.64 -0.6
964,602 + IAI47_04585 0.65 -0.0
964,602 + IAI47_04585 0.65 -1.3
964,603 - IAI47_04585 0.65 -0.9
964,603 - IAI47_04585 0.65 -0.5
964,603 - IAI47_04585 0.65 -0.8
964,603 - IAI47_04585 0.65 -2.5
964,603 - IAI47_04585 0.65 +2.9
964,603 - IAI47_04585 0.65 -1.6
964,603 - IAI47_04585 0.65 +2.3
964,603 - IAI47_04585 0.65 -1.9
964,882 + -0.6
964,883 - -0.8
964,934 + -2.1
965,093 + IAI47_04590 0.25 +2.8
965,154 - IAI47_04590 0.32 +1.1
965,154 - IAI47_04590 0.32 +0.2
965,165 + IAI47_04590 0.33 +0.6
965,166 - IAI47_04590 0.33 -0.5
965,166 - IAI47_04590 0.33 -0.0
965,166 - IAI47_04590 0.33 +1.6
965,166 - IAI47_04590 0.33 -0.1
965,180 + IAI47_04590 0.35 -1.6
965,180 + IAI47_04590 0.35 -0.1
965,180 + IAI47_04590 0.35 -1.2
965,210 - IAI47_04590 0.38 -0.6
965,469 + IAI47_04590 0.69 -1.6
965,470 - IAI47_04590 0.69 -0.5
965,707 - -1.3
965,765 + -1.8
965,765 + -0.3
965,785 + -2.3
965,786 - -0.0
965,866 + IAI47_04595 0.12 -0.7
965,866 + IAI47_04595 0.12 +0.2
965,867 - IAI47_04595 0.13 -4.1
965,867 - IAI47_04595 0.13 -0.0
965,867 - IAI47_04595 0.13 -1.7
965,867 - IAI47_04595 0.13 -2.5
965,867 - IAI47_04595 0.13 +0.9
965,867 - IAI47_04595 0.13 +3.3
965,867 - IAI47_04595 0.13 +0.6
965,867 - IAI47_04595 0.13 -0.1
965,868 + IAI47_04595 0.13 -0.6
965,868 + IAI47_04595 0.13 -0.0
965,868 + IAI47_04595 0.13 -0.6
965,868 + IAI47_04595 0.13 +2.6
965,868 + IAI47_04595 0.13 +1.4
965,868 + IAI47_04595 0.13 -2.5
965,868 + IAI47_04595 0.13 -1.8
965,868 + IAI47_04595 0.13 -0.5
965,868 + IAI47_04595 0.13 +0.4
965,868 + IAI47_04595 0.13 +0.6
965,869 - IAI47_04595 0.13 -0.6
965,869 - IAI47_04595 0.13 -0.0
965,869 - IAI47_04595 0.13 +1.5

Or see this region's nucleotide sequence