Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03660 and IAI47_03665 are separated by 170 nucleotides IAI47_03665 and IAI47_03670 are separated by 192 nucleotides IAI47_03670 and IAI47_03675 are separated by 64 nucleotides
IAI47_03660: IAI47_03660 - biosynthetic arginine decarboxylase, at 762,124 to 764,100
_03660
IAI47_03665: IAI47_03665 - agmatinase, at 764,271 to 765,191
_03665
IAI47_03670: IAI47_03670 - DUF937 domain-containing protein, at 765,384 to 765,794
_03670
IAI47_03675: IAI47_03675 - M48 family metallopeptidase, at 765,859 to 766,617
_03675
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 763.413 kb on + strand, within IAI47_03660 at 763.437 kb on + strand, within IAI47_03660 at 763.437 kb on + strand, within IAI47_03660 at 763.437 kb on + strand, within IAI47_03660 at 763.437 kb on + strand, within IAI47_03660 at 763.438 kb on - strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.441 kb on + strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.442 kb on - strand, within IAI47_03660 at 763.477 kb on + strand, within IAI47_03660 at 763.477 kb on + strand, within IAI47_03660 at 763.495 kb on + strand, within IAI47_03660 at 763.495 kb on + strand, within IAI47_03660 at 763.495 kb on + strand, within IAI47_03660 at 763.495 kb on + strand, within IAI47_03660 at 763.495 kb on + strand, within IAI47_03660 at 763.496 kb on - strand, within IAI47_03660 at 763.496 kb on - strand, within IAI47_03660 at 763.496 kb on - strand, within IAI47_03660 at 763.496 kb on - strand, within IAI47_03660 at 763.496 kb on - strand, within IAI47_03660 at 763.497 kb on + strand, within IAI47_03660 at 763.497 kb on + strand, within IAI47_03660 at 763.497 kb on + strand, within IAI47_03660 at 763.497 kb on + strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.498 kb on - strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.572 kb on + strand, within IAI47_03660 at 763.573 kb on - strand, within IAI47_03660 at 763.573 kb on - strand, within IAI47_03660 at 763.573 kb on - strand, within IAI47_03660 at 763.573 kb on - strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.579 kb on + strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.580 kb on - strand, within IAI47_03660 at 763.584 kb on + strand, within IAI47_03660 at 763.584 kb on + strand, within IAI47_03660 at 763.732 kb on + strand, within IAI47_03660 at 763.732 kb on + strand, within IAI47_03660 at 763.733 kb on - strand, within IAI47_03660 at 763.733 kb on - strand, within IAI47_03660 at 763.733 kb on - strand, within IAI47_03660 at 763.733 kb on - strand, within IAI47_03660 at 763.733 kb on - strand, within IAI47_03660 at 763.777 kb on + strand, within IAI47_03660 at 763.778 kb on - strand, within IAI47_03660 at 763.788 kb on + strand, within IAI47_03660 at 763.789 kb on - strand, within IAI47_03660 at 763.789 kb on - strand, within IAI47_03660 at 763.825 kb on + strand, within IAI47_03660 at 763.826 kb on - strand, within IAI47_03660 at 763.826 kb on - strand, within IAI47_03660 at 763.885 kb on + strand, within IAI47_03660 at 763.885 kb on + strand, within IAI47_03660 at 763.885 kb on + strand, within IAI47_03660 at 763.885 kb on + strand, within IAI47_03660 at 763.885 kb on + strand, within IAI47_03660 at 763.886 kb on - strand, within IAI47_03660 at 763.886 kb on - strand, within IAI47_03660 at 763.886 kb on - strand, within IAI47_03660 at 763.886 kb on - strand, within IAI47_03660 at 763.886 kb on - strand, within IAI47_03660 at 763.936 kb on - strand at 763.957 kb on + strand at 763.958 kb on - strand at 763.958 kb on - strand at 763.958 kb on - strand at 763.958 kb on - strand at 763.958 kb on - strand at 764.077 kb on + strand at 764.077 kb on + strand at 764.077 kb on + strand at 764.078 kb on - strand at 764.078 kb on - strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.084 kb on - strand at 764.084 kb on - strand at 764.084 kb on - strand at 764.084 kb on - strand at 764.087 kb on + strand at 764.087 kb on + strand at 764.087 kb on + strand at 764.087 kb on + strand at 764.088 kb on - strand at 764.088 kb on - strand at 764.088 kb on - strand at 764.088 kb on - strand at 764.088 kb on - strand at 764.126 kb on + strand at 764.126 kb on + strand at 764.127 kb on - strand at 764.127 kb on - strand at 764.127 kb on - strand at 764.141 kb on + strand at 764.145 kb on + strand at 764.145 kb on + strand at 764.145 kb on + strand at 764.146 kb on - strand at 764.146 kb on - strand at 764.146 kb on - strand at 764.188 kb on + strand at 764.189 kb on - strand at 764.190 kb on - strand at 764.223 kb on + strand at 764.223 kb on + strand at 764.224 kb on - strand at 764.224 kb on - strand at 764.248 kb on + strand at 764.248 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.257 kb on + strand at 764.258 kb on - strand at 764.258 kb on - strand at 764.258 kb on - strand at 764.258 kb on - strand at 764.258 kb on - strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.270 kb on + strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.271 kb on - strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.274 kb on + strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.275 kb on - strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.276 kb on + strand at 764.277 kb on - strand at 764.277 kb on - strand at 764.277 kb on - strand at 764.295 kb on + strand at 764.295 kb on + strand at 764.295 kb on + strand at 764.296 kb on - strand at 764.296 kb on - strand at 764.296 kb on - strand at 764.359 kb on - strand at 764.359 kb on - strand at 764.359 kb on - strand at 764.551 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.697 kb on - strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.727 kb on - strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.777 kb on + strand, within IAI47_03665 at 764.792 kb on - strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 765.032 kb on + strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.108 kb on + strand at 765.108 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.159 kb on - strand at 765.159 kb on - strand at 765.189 kb on + strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.242 kb on - strand at 765.242 kb on - strand at 765.346 kb on + strand at 765.356 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.415 kb on + strand at 765.416 kb on - strand at 765.492 kb on - strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.636 kb on - strand, within IAI47_03670 at 765.653 kb on + strand, within IAI47_03670 at 765.681 kb on - strand, within IAI47_03670 at 765.722 kb on + strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.749 kb on + strand, within IAI47_03670 at 765.750 kb on - strand, within IAI47_03670 at 765.760 kb on + strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.793 kb on - strand at 765.793 kb on - strand at 765.818 kb on + strand at 765.819 kb on - strand at 765.851 kb on - strand at 765.851 kb on - strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 766.003 kb on - strand, within IAI47_03675 at 766.003 kb on - strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.029 kb on - strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 763,413 + IAI47_03660 0.65 -0.9 763,437 + IAI47_03660 0.66 -0.6 763,437 + IAI47_03660 0.66 -2.5 763,437 + IAI47_03660 0.66 -0.7 763,437 + IAI47_03660 0.66 -2.3 763,438 - IAI47_03660 0.66 +0.7 763,441 + IAI47_03660 0.67 -2.7 763,441 + IAI47_03660 0.67 -1.0 763,441 + IAI47_03660 0.67 -0.3 763,441 + IAI47_03660 0.67 +2.7 763,441 + IAI47_03660 0.67 -1.5 763,441 + IAI47_03660 0.67 +0.0 763,441 + IAI47_03660 0.67 +2.1 763,441 + IAI47_03660 0.67 +1.2 763,441 + IAI47_03660 0.67 -0.1 763,441 + IAI47_03660 0.67 +2.4 763,442 - IAI47_03660 0.67 -0.6 763,442 - IAI47_03660 0.67 +0.9 763,442 - IAI47_03660 0.67 +0.9 763,442 - IAI47_03660 0.67 +0.3 763,442 - IAI47_03660 0.67 -1.5 763,442 - IAI47_03660 0.67 -2.5 763,477 + IAI47_03660 0.68 -2.8 763,477 + IAI47_03660 0.68 -2.1 763,495 + IAI47_03660 0.69 +2.4 763,495 + IAI47_03660 0.69 -1.0 763,495 + IAI47_03660 0.69 +0.3 763,495 + IAI47_03660 0.69 -2.1 763,495 + IAI47_03660 0.69 -2.3 763,496 - IAI47_03660 0.69 +0.6 763,496 - IAI47_03660 0.69 -1.3 763,496 - IAI47_03660 0.69 -1.6 763,496 - IAI47_03660 0.69 -3.0 763,496 - IAI47_03660 0.69 +0.7 763,497 + IAI47_03660 0.69 -1.3 763,497 + IAI47_03660 0.69 +0.0 763,497 + IAI47_03660 0.69 -0.9 763,497 + IAI47_03660 0.69 +1.0 763,498 - IAI47_03660 0.69 +1.0 763,498 - IAI47_03660 0.69 -0.1 763,498 - IAI47_03660 0.69 -1.7 763,498 - IAI47_03660 0.69 +0.0 763,498 - IAI47_03660 0.69 +0.0 763,498 - IAI47_03660 0.69 -3.1 763,572 + IAI47_03660 0.73 -1.4 763,572 + IAI47_03660 0.73 -0.0 763,572 + IAI47_03660 0.73 +2.5 763,572 + IAI47_03660 0.73 -0.0 763,572 + IAI47_03660 0.73 +0.0 763,572 + IAI47_03660 0.73 +1.7 763,572 + IAI47_03660 0.73 +0.7 763,572 + IAI47_03660 0.73 -1.3 763,573 - IAI47_03660 0.73 -1.6 763,573 - IAI47_03660 0.73 -1.2 763,573 - IAI47_03660 0.73 -0.4 763,573 - IAI47_03660 0.73 -1.1 763,579 + IAI47_03660 0.74 +1.4 763,579 + IAI47_03660 0.74 +0.6 763,579 + IAI47_03660 0.74 +1.0 763,579 + IAI47_03660 0.74 -1.0 763,579 + IAI47_03660 0.74 -0.0 763,579 + IAI47_03660 0.74 +0.9 763,579 + IAI47_03660 0.74 -1.6 763,580 - IAI47_03660 0.74 +0.9 763,580 - IAI47_03660 0.74 +3.7 763,580 - IAI47_03660 0.74 -1.3 763,580 - IAI47_03660 0.74 -1.9 763,580 - IAI47_03660 0.74 -1.0 763,580 - IAI47_03660 0.74 -0.2 763,580 - IAI47_03660 0.74 +2.0 763,584 + IAI47_03660 0.74 -2.1 763,584 + IAI47_03660 0.74 -0.6 763,732 + IAI47_03660 0.81 +0.8 763,732 + IAI47_03660 0.81 +1.6 763,733 - IAI47_03660 0.81 -1.8 763,733 - IAI47_03660 0.81 -2.8 763,733 - IAI47_03660 0.81 +1.0 763,733 - IAI47_03660 0.81 +0.8 763,733 - IAI47_03660 0.81 +1.0 763,777 + IAI47_03660 0.84 +2.0 763,778 - IAI47_03660 0.84 -0.7 763,788 + IAI47_03660 0.84 +0.8 763,789 - IAI47_03660 0.84 +0.1 763,789 - IAI47_03660 0.84 -0.1 763,825 + IAI47_03660 0.86 -0.6 763,826 - IAI47_03660 0.86 +2.3 763,826 - IAI47_03660 0.86 +1.7 763,885 + IAI47_03660 0.89 +1.2 763,885 + IAI47_03660 0.89 +0.3 763,885 + IAI47_03660 0.89 +0.0 763,885 + IAI47_03660 0.89 +1.5 763,885 + IAI47_03660 0.89 -0.6 763,886 - IAI47_03660 0.89 -2.5 763,886 - IAI47_03660 0.89 -0.3 763,886 - IAI47_03660 0.89 +0.8 763,886 - IAI47_03660 0.89 +1.6 763,886 - IAI47_03660 0.89 -0.2 763,936 - -0.8 763,957 + -1.0 763,958 - -2.3 763,958 - -3.2 763,958 - +0.1 763,958 - -2.1 763,958 - -1.9 764,077 + +0.3 764,077 + +0.9 764,077 + -0.7 764,078 - +1.3 764,078 - +0.9 764,083 + +1.0 764,083 + +1.2 764,083 + -2.5 764,084 - +1.2 764,084 - -1.0 764,084 - -0.6 764,084 - -1.5 764,087 + -0.4 764,087 + -0.4 764,087 + -1.6 764,087 + +0.7 764,088 - -2.2 764,088 - -0.5 764,088 - +1.1 764,088 - -1.4 764,088 - +0.9 764,126 + -0.6 764,126 + +1.0 764,127 - -2.0 764,127 - +1.0 764,127 - +0.5 764,141 + +0.1 764,145 + +0.4 764,145 + -0.1 764,145 + +5.3 764,146 - -2.3 764,146 - -2.5 764,146 - -1.9 764,188 + +1.0 764,189 - +1.0 764,190 - -1.5 764,223 + -3.1 764,223 + +0.4 764,224 - -2.6 764,224 - +0.6 764,248 + +0.2 764,248 + -0.5 764,257 + -2.5 764,257 + +0.2 764,257 + +0.8 764,257 + +1.8 764,257 + -1.4 764,257 + -0.7 764,257 + -2.5 764,257 + -1.9 764,258 - +0.4 764,258 - -2.2 764,258 - -0.2 764,258 - -0.3 764,258 - +1.5 764,270 + +0.1 764,270 + -1.6 764,270 + +0.5 764,270 + +3.0 764,270 + +0.1 764,270 + +1.3 764,270 + +0.4 764,270 + -0.0 764,270 + +0.6 764,270 + -3.3 764,270 + +2.5 764,271 - +0.4 764,271 - -1.8 764,271 - -1.2 764,271 - -1.7 764,271 - -1.9 764,271 - +0.9 764,271 - -1.7 764,271 - -0.1 764,271 - -1.3 764,271 - -1.2 764,271 - +0.0 764,274 + -3.5 764,274 + +1.3 764,274 + -3.3 764,274 + +0.2 764,274 + -2.0 764,274 + -0.6 764,274 + -3.0 764,274 + -1.3 764,274 + -1.2 764,275 - -2.3 764,275 - +1.3 764,275 - -0.6 764,275 - -1.9 764,275 - +0.0 764,275 - -0.1 764,275 - +0.8 764,275 - -0.6 764,276 + -0.3 764,276 + +2.0 764,276 + +0.6 764,276 + +1.3 764,276 + +0.3 764,276 + -0.4 764,276 + -1.3 764,277 - -0.4 764,277 - +3.0 764,277 - -1.2 764,295 + +1.3 764,295 + -2.5 764,295 + -1.3 764,296 - +0.6 764,296 - -1.5 764,296 - -0.2 764,359 - +2.3 764,359 - -0.4 764,359 - +0.7 764,551 - IAI47_03665 0.30 -1.7 764,653 - IAI47_03665 0.41 -1.3 764,653 - IAI47_03665 0.41 -1.1 764,653 - IAI47_03665 0.41 +0.0 764,657 + IAI47_03665 0.42 +2.4 764,657 + IAI47_03665 0.42 -0.6 764,657 + IAI47_03665 0.42 +2.7 764,657 + IAI47_03665 0.42 -1.2 764,658 - IAI47_03665 0.42 -1.5 764,658 - IAI47_03665 0.42 -3.7 764,658 - 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Or see this region's nucleotide sequence