Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03460 and IAI47_03465 are separated by 97 nucleotides IAI47_03465 and IAI47_03470 are separated by 780 nucleotides
IAI47_03460: IAI47_03460 - SDR family oxidoreductase, at 722,966 to 723,823
_03460
IAI47_03465: IAI47_03465 - helix-turn-helix transcriptional regulator, at 723,921 to 724,301
_03465
IAI47_03470: IAI47_03470 - cytochrome ubiquinol oxidase subunit I, at 725,082 to 726,494
_03470
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 722.930 kb on + strand at 722.930 kb on + strand at 722.930 kb on + strand at 722.930 kb on + strand at 722.931 kb on - strand at 722.931 kb on - strand at 722.931 kb on - strand at 723.054 kb on + strand, within IAI47_03460 at 723.054 kb on + strand, within IAI47_03460 at 723.055 kb on - strand, within IAI47_03460 at 723.055 kb on - strand, within IAI47_03460 at 723.055 kb on - strand, within IAI47_03460 at 723.130 kb on + strand, within IAI47_03460 at 723.168 kb on + strand, within IAI47_03460 at 723.168 kb on + strand, within IAI47_03460 at 723.168 kb on + strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.169 kb on - strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.225 kb on + strand, within IAI47_03460 at 723.226 kb on - strand, within IAI47_03460 at 723.226 kb on - strand, within IAI47_03460 at 723.226 kb on - strand, within IAI47_03460 at 723.249 kb on + strand, within IAI47_03460 at 723.249 kb on + strand, within IAI47_03460 at 723.250 kb on - strand, within IAI47_03460 at 723.250 kb on - strand, within IAI47_03460 at 723.303 kb on + strand, within IAI47_03460 at 723.304 kb on - strand, within IAI47_03460 at 723.304 kb on - strand, within IAI47_03460 at 723.304 kb on - strand, within IAI47_03460 at 723.353 kb on - strand, within IAI47_03460 at 723.394 kb on - strand, within IAI47_03460 at 723.405 kb on + strand, within IAI47_03460 at 723.405 kb on + strand, within IAI47_03460 at 723.406 kb on - strand, within IAI47_03460 at 723.416 kb on - strand, within IAI47_03460 at 723.482 kb on + strand, within IAI47_03460 at 723.482 kb on + strand, within IAI47_03460 at 723.482 kb on + strand, within IAI47_03460 at 723.483 kb on - strand, within IAI47_03460 at 723.520 kb on + strand, within IAI47_03460 at 723.521 kb on - strand, within IAI47_03460 at 723.521 kb on - strand, within IAI47_03460 at 723.521 kb on - strand, within IAI47_03460 at 723.521 kb on - strand, within IAI47_03460 at 723.522 kb on + strand, within IAI47_03460 at 723.523 kb on - strand, within IAI47_03460 at 723.536 kb on + strand, within IAI47_03460 at 723.537 kb on - strand, within IAI47_03460 at 723.571 kb on + strand, within IAI47_03460 at 723.571 kb on + strand, within IAI47_03460 at 723.571 kb on + strand, within IAI47_03460 at 723.571 kb on + strand, within IAI47_03460 at 723.572 kb on - strand, within IAI47_03460 at 723.572 kb on - strand, within IAI47_03460 at 723.572 kb on - strand, within IAI47_03460 at 723.615 kb on - strand, within IAI47_03460 at 723.615 kb on - strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.666 kb on + strand, within IAI47_03460 at 723.667 kb on - strand, within IAI47_03460 at 723.725 kb on - strand, within IAI47_03460 at 723.725 kb on - strand, within IAI47_03460 at 723.767 kb on + strand at 723.767 kb on + strand at 723.767 kb on + strand at 723.813 kb on - strand at 723.813 kb on - strand at 723.826 kb on + strand at 723.826 kb on + strand at 723.827 kb on - strand at 723.827 kb on - strand at 723.827 kb on - strand at 723.859 kb on + strand at 723.860 kb on - strand at 723.860 kb on - strand at 723.864 kb on + strand at 723.867 kb on - strand at 723.881 kb on + strand at 723.885 kb on + strand at 723.901 kb on - strand at 723.918 kb on + strand at 723.919 kb on - strand at 723.930 kb on - strand at 723.930 kb on - strand at 723.930 kb on - strand at 723.961 kb on + strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.962 kb on - strand, within IAI47_03465 at 723.971 kb on + strand, within IAI47_03465 at 723.971 kb on + strand, within IAI47_03465 at 723.972 kb on - strand, within IAI47_03465 at 723.972 kb on - strand, within IAI47_03465 at 724.021 kb on + strand, within IAI47_03465 at 724.021 kb on + strand, within IAI47_03465 at 724.021 kb on + strand, within IAI47_03465 at 724.022 kb on - strand, within IAI47_03465 at 724.022 kb on - strand, within IAI47_03465 at 724.022 kb on - strand, within IAI47_03465 at 724.122 kb on + strand, within IAI47_03465 at 724.122 kb on + strand, within IAI47_03465 at 724.122 kb on + strand, within IAI47_03465 at 724.158 kb on + strand, within IAI47_03465 at 724.158 kb on + strand, within IAI47_03465 at 724.158 kb on + strand, within IAI47_03465 at 724.158 kb on + strand, within IAI47_03465 at 724.159 kb on - strand, within IAI47_03465 at 724.159 kb on - strand, within IAI47_03465 at 724.185 kb on + strand, within IAI47_03465 at 724.185 kb on + strand, within IAI47_03465 at 724.186 kb on - strand, within IAI47_03465 at 724.253 kb on - strand, within IAI47_03465 at 724.253 kb on - strand, within IAI47_03465 at 724.299 kb on + strand at 724.300 kb on - strand at 724.300 kb on - strand at 724.300 kb on - strand at 724.377 kb on + strand at 724.377 kb on + strand at 724.377 kb on + strand at 724.407 kb on + strand at 724.407 kb on + strand at 724.408 kb on - strand at 724.419 kb on + strand at 724.419 kb on + strand at 724.419 kb on + strand at 724.420 kb on - strand at 724.420 kb on - strand at 724.453 kb on - strand at 724.455 kb on + strand at 724.456 kb on - strand at 724.466 kb on - strand at 724.486 kb on - strand at 724.487 kb on + strand at 724.487 kb on + strand at 724.487 kb on + strand at 724.488 kb on - strand at 724.488 kb on - strand at 724.510 kb on + strand at 724.514 kb on - strand at 724.542 kb on - strand at 724.550 kb on - strand at 724.550 kb on - strand at 724.550 kb on - strand at 724.550 kb on - strand at 724.561 kb on - strand at 724.561 kb on - strand at 724.576 kb on - strand at 724.580 kb on + strand at 724.581 kb on - strand at 724.592 kb on - strand at 724.606 kb on + strand at 724.607 kb on - strand at 724.610 kb on - strand at 724.610 kb on - strand at 724.675 kb on + strand at 724.677 kb on + strand at 724.687 kb on + strand at 724.688 kb on - strand at 724.718 kb on + strand at 724.719 kb on - strand at 724.719 kb on - strand at 724.773 kb on + strand at 724.824 kb on + strand at 724.824 kb on + strand at 724.840 kb on + strand at 724.840 kb on + strand at 724.840 kb on + strand at 724.841 kb on - strand at 724.969 kb on + strand at 724.969 kb on + strand at 724.969 kb on + strand at 724.969 kb on + strand at 724.970 kb on - strand at 724.970 kb on - strand at 724.975 kb on + strand at 725.039 kb on + strand at 725.039 kb on + strand at 725.040 kb on - strand at 725.045 kb on + strand at 725.049 kb on + strand at 725.062 kb on - strand at 725.062 kb on - strand at 725.062 kb on - strand at 725.076 kb on + strand at 725.077 kb on - strand at 725.077 kb on - strand at 725.092 kb on + strand at 725.092 kb on + strand at 725.092 kb on + strand at 725.092 kb on + strand at 725.093 kb on - strand at 725.129 kb on + strand at 725.129 kb on + strand at 725.129 kb on + strand at 725.130 kb on - strand at 725.130 kb on - strand at 725.130 kb on - strand at 725.134 kb on + strand at 725.134 kb on + strand at 725.135 kb on - strand at 725.135 kb on - strand at 725.135 kb on - strand at 725.144 kb on + strand at 725.144 kb on + strand at 725.144 kb on + strand at 725.144 kb on + strand at 725.144 kb on + strand at 725.144 kb on + strand at 725.145 kb on - strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.147 kb on + strand at 725.148 kb on - strand at 725.148 kb on - strand at 725.148 kb on - strand at 725.148 kb on - strand at 725.148 kb on - strand at 725.148 kb on - strand at 725.191 kb on + strand at 725.191 kb on + strand at 725.192 kb on - strand at 725.192 kb on - strand at 725.192 kb on - strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.201 kb on + strand at 725.202 kb on - strand at 725.202 kb on - strand at 725.202 kb on - strand at 725.202 kb on - strand at 725.202 kb on - strand at 725.211 kb on - strand at 725.230 kb on - strand, within IAI47_03470 at 725.241 kb on + strand, within IAI47_03470 at 725.241 kb on + strand, within IAI47_03470 at 725.242 kb on - strand, within IAI47_03470 at 725.270 kb on + strand, within IAI47_03470 at 725.271 kb on - strand, within IAI47_03470 at 725.279 kb on + strand, within IAI47_03470 at 725.280 kb on - strand, within IAI47_03470 at 725.290 kb on + strand, within IAI47_03470 at 725.290 kb on + strand, within IAI47_03470 at 725.290 kb on + strand, within IAI47_03470
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 722,930 + -1.4 722,930 + +1.5 722,930 + -1.3 722,930 + -1.4 722,931 - -1.4 722,931 - +2.8 722,931 - -0.3 723,054 + IAI47_03460 0.10 -0.5 723,054 + IAI47_03460 0.10 -0.6 723,055 - IAI47_03460 0.10 +1.9 723,055 - IAI47_03460 0.10 -0.6 723,055 - IAI47_03460 0.10 +1.1 723,130 + IAI47_03460 0.19 -1.3 723,168 + IAI47_03460 0.24 -0.8 723,168 + IAI47_03460 0.24 +0.5 723,168 + IAI47_03460 0.24 -1.7 723,169 - IAI47_03460 0.24 +2.2 723,169 - IAI47_03460 0.24 +0.4 723,169 - IAI47_03460 0.24 +1.0 723,169 - IAI47_03460 0.24 -1.0 723,169 - IAI47_03460 0.24 +0.3 723,169 - IAI47_03460 0.24 -0.8 723,225 + IAI47_03460 0.30 +0.8 723,225 + IAI47_03460 0.30 +0.2 723,225 + IAI47_03460 0.30 +1.4 723,225 + IAI47_03460 0.30 +0.5 723,225 + IAI47_03460 0.30 +0.7 723,225 + IAI47_03460 0.30 -1.1 723,225 + IAI47_03460 0.30 -1.6 723,226 - IAI47_03460 0.30 -0.5 723,226 - IAI47_03460 0.30 +1.0 723,226 - IAI47_03460 0.30 -0.0 723,249 + IAI47_03460 0.33 +2.5 723,249 + IAI47_03460 0.33 -2.0 723,250 - IAI47_03460 0.33 +0.5 723,250 - IAI47_03460 0.33 +1.7 723,303 + IAI47_03460 0.39 -1.0 723,304 - IAI47_03460 0.39 -0.1 723,304 - IAI47_03460 0.39 +1.0 723,304 - IAI47_03460 0.39 -2.4 723,353 - IAI47_03460 0.45 +0.7 723,394 - IAI47_03460 0.50 +0.8 723,405 + IAI47_03460 0.51 +0.4 723,405 + IAI47_03460 0.51 -0.5 723,406 - IAI47_03460 0.51 -0.2 723,416 - IAI47_03460 0.52 -0.1 723,482 + IAI47_03460 0.60 +2.2 723,482 + IAI47_03460 0.60 +1.8 723,482 + IAI47_03460 0.60 +0.3 723,483 - IAI47_03460 0.60 -0.6 723,520 + IAI47_03460 0.65 -1.4 723,521 - IAI47_03460 0.65 -0.0 723,521 - IAI47_03460 0.65 -1.6 723,521 - IAI47_03460 0.65 -1.6 723,521 - IAI47_03460 0.65 -2.6 723,522 + IAI47_03460 0.65 -1.0 723,523 - IAI47_03460 0.65 -0.9 723,536 + IAI47_03460 0.66 +1.3 723,537 - IAI47_03460 0.67 +0.6 723,571 + IAI47_03460 0.71 +1.0 723,571 + IAI47_03460 0.71 +2.0 723,571 + IAI47_03460 0.71 +1.4 723,571 + IAI47_03460 0.71 -1.7 723,572 - IAI47_03460 0.71 +0.7 723,572 - IAI47_03460 0.71 +1.8 723,572 - IAI47_03460 0.71 +1.9 723,615 - IAI47_03460 0.76 +0.8 723,615 - IAI47_03460 0.76 -2.0 723,666 + IAI47_03460 0.82 -0.6 723,666 + IAI47_03460 0.82 +1.0 723,666 + IAI47_03460 0.82 -0.4 723,666 + IAI47_03460 0.82 +0.2 723,666 + IAI47_03460 0.82 -1.9 723,666 + IAI47_03460 0.82 +0.4 723,667 - IAI47_03460 0.82 -1.7 723,725 - IAI47_03460 0.88 -1.9 723,725 - IAI47_03460 0.88 -2.2 723,767 + -1.5 723,767 + -0.3 723,767 + -1.3 723,813 - +0.6 723,813 - +0.5 723,826 + +0.6 723,826 + -1.4 723,827 - +1.5 723,827 - +0.4 723,827 - -0.3 723,859 + +0.2 723,860 - -0.5 723,860 - +0.6 723,864 + -0.3 723,867 - -1.7 723,881 + +1.9 723,885 + -1.3 723,901 - +0.7 723,918 + +0.8 723,919 - +2.1 723,930 - -1.6 723,930 - +1.2 723,930 - +2.0 723,961 + IAI47_03465 0.10 -1.9 723,962 - IAI47_03465 0.11 -1.1 723,962 - IAI47_03465 0.11 -0.1 723,962 - IAI47_03465 0.11 +0.1 723,962 - IAI47_03465 0.11 -0.7 723,962 - IAI47_03465 0.11 +0.4 723,962 - IAI47_03465 0.11 +0.3 723,971 + IAI47_03465 0.13 -1.6 723,971 + IAI47_03465 0.13 -0.7 723,972 - IAI47_03465 0.13 -2.3 723,972 - IAI47_03465 0.13 -2.4 724,021 + IAI47_03465 0.26 +0.9 724,021 + IAI47_03465 0.26 +1.5 724,021 + IAI47_03465 0.26 -3.6 724,022 - IAI47_03465 0.27 +1.3 724,022 - IAI47_03465 0.27 -2.1 724,022 - IAI47_03465 0.27 -1.4 724,122 + IAI47_03465 0.53 -2.0 724,122 + IAI47_03465 0.53 -0.6 724,122 + IAI47_03465 0.53 -1.1 724,158 + IAI47_03465 0.62 +0.6 724,158 + IAI47_03465 0.62 +2.0 724,158 + IAI47_03465 0.62 +0.4 724,158 + IAI47_03465 0.62 -1.5 724,159 - IAI47_03465 0.62 -0.2 724,159 - IAI47_03465 0.62 -0.8 724,185 + IAI47_03465 0.69 +0.2 724,185 + IAI47_03465 0.69 -1.9 724,186 - IAI47_03465 0.70 -1.8 724,253 - IAI47_03465 0.87 +0.3 724,253 - IAI47_03465 0.87 -2.4 724,299 + -0.7 724,300 - -1.6 724,300 - +1.7 724,300 - -1.7 724,377 + +1.5 724,377 + +1.5 724,377 + +0.7 724,407 + +0.6 724,407 + +1.1 724,408 - -0.8 724,419 + -0.1 724,419 + +0.7 724,419 + -1.8 724,420 - +1.6 724,420 - +0.0 724,453 - +0.8 724,455 + +0.7 724,456 - -2.7 724,466 - -2.9 724,486 - +0.3 724,487 + -2.7 724,487 + -1.3 724,487 + -1.3 724,488 - -1.1 724,488 - +2.7 724,510 + +0.4 724,514 - -0.3 724,542 - -0.1 724,550 - +2.2 724,550 - -1.3 724,550 - +0.2 724,550 - +1.3 724,561 - +0.4 724,561 - -1.6 724,576 - -3.6 724,580 + +1.4 724,581 - -1.6 724,592 - -0.3 724,606 + -1.8 724,607 - -0.2 724,610 - -0.8 724,610 - -1.6 724,675 + -1.4 724,677 + +1.0 724,687 + +0.6 724,688 - +1.7 724,718 + -0.2 724,719 - -1.1 724,719 - -1.0 724,773 + -0.5 724,824 + -0.3 724,824 + -0.8 724,840 + +0.3 724,840 + +1.9 724,840 + -2.2 724,841 - -0.2 724,969 + -1.6 724,969 + -0.6 724,969 + -0.7 724,969 + -0.8 724,970 - -1.8 724,970 - +2.2 724,975 + +3.5 725,039 + +1.1 725,039 + -0.7 725,040 - +1.7 725,045 + +1.5 725,049 + -1.0 725,062 - -0.2 725,062 - +0.8 725,062 - -0.8 725,076 + +0.8 725,077 - -2.6 725,077 - +0.3 725,092 + -0.8 725,092 + -0.6 725,092 + +1.7 725,092 + +1.2 725,093 - +0.0 725,129 + -2.1 725,129 + -0.6 725,129 + +1.8 725,130 - -1.2 725,130 - -2.5 725,130 - -0.0 725,134 + -1.7 725,134 + +2.3 725,135 - -1.7 725,135 - -1.8 725,135 - -0.9 725,144 + -1.0 725,144 + +0.9 725,144 + +1.2 725,144 + +1.7 725,144 + -1.6 725,144 + -1.0 725,145 - -2.7 725,147 + -2.1 725,147 + +1.4 725,147 + -2.2 725,147 + +0.5 725,147 + +1.0 725,147 + +0.8 725,147 + +0.4 725,148 - +0.8 725,148 - -1.1 725,148 - +0.8 725,148 - +0.9 725,148 - +2.0 725,148 - -1.7 725,191 + +1.2 725,191 + +2.7 725,192 - -1.0 725,192 - -3.2 725,192 - +0.7 725,201 + -0.0 725,201 + +0.5 725,201 + +0.2 725,201 + -2.7 725,201 + +0.1 725,201 + +0.4 725,201 + +1.8 725,201 + -0.4 725,202 - +2.5 725,202 - +2.0 725,202 - -0.9 725,202 - -0.9 725,202 - +0.4 725,211 - -0.6 725,230 - IAI47_03470 0.10 -0.1 725,241 + IAI47_03470 0.11 +2.3 725,241 + IAI47_03470 0.11 +1.8 725,242 - IAI47_03470 0.11 +0.5 725,270 + IAI47_03470 0.13 -1.1 725,271 - IAI47_03470 0.13 +0.4 725,279 + IAI47_03470 0.14 -2.5 725,280 - IAI47_03470 0.14 +0.5 725,290 + IAI47_03470 0.15 -1.0 725,290 + IAI47_03470 0.15 -0.8 725,290 + IAI47_03470 0.15 +1.3
Or see this region's nucleotide sequence