Strain Fitness in Pantoea sp. MT58 around IAI47_00635

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00620 and IAI47_00625 are separated by 241 nucleotidesIAI47_00625 and IAI47_00630 are separated by 19 nucleotidesIAI47_00630 and IAI47_00635 are separated by 69 nucleotidesIAI47_00635 and IAI47_00640 overlap by 4 nucleotidesIAI47_00640 and IAI47_00645 overlap by 4 nucleotides IAI47_00620: IAI47_00620 - DNA repair protein RadC, at 136,134 to 136,790 _00620 IAI47_00625: IAI47_00625 - 50S ribosomal protein L28, at 137,032 to 137,268 _00625 IAI47_00630: IAI47_00630 - 50S ribosomal protein L33, at 137,288 to 137,455 _00630 IAI47_00635: IAI47_00635 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 137,525 to 138,334 _00635 IAI47_00640: IAI47_00640 - pantetheine-phosphate adenylyltransferase, at 138,331 to 138,810 _00640 IAI47_00645: IAI47_00645 - glycosyltransferase family 2 protein, at 138,807 to 139,583 _00645 Position (kb) 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 136.525 kb on + strand, within IAI47_00620at 136.525 kb on + strand, within IAI47_00620at 136.526 kb on - strand, within IAI47_00620at 136.526 kb on - strand, within IAI47_00620at 136.526 kb on - strand, within IAI47_00620at 136.538 kb on + strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.539 kb on - strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.553 kb on + strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.554 kb on - strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.556 kb on + strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.557 kb on - strand, within IAI47_00620at 136.559 kb on + strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.560 kb on - strand, within IAI47_00620at 136.634 kb on + strand, within IAI47_00620at 136.634 kb on + strand, within IAI47_00620at 136.634 kb on + strand, within IAI47_00620at 136.635 kb on - strand, within IAI47_00620at 136.711 kb on + strand, within IAI47_00620at 136.711 kb on + strand, within IAI47_00620at 136.712 kb on - strand, within IAI47_00620at 136.712 kb on - strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.720 kb on + strand, within IAI47_00620at 136.721 kb on - strand, within IAI47_00620at 136.721 kb on - strand, within IAI47_00620at 136.721 kb on - strand, within IAI47_00620at 136.721 kb on - strand, within IAI47_00620at 136.721 kb on - strand, within IAI47_00620at 136.758 kb on + strandat 136.758 kb on + strandat 136.758 kb on + strandat 136.758 kb on + strandat 136.758 kb on + strandat 136.758 kb on + strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.759 kb on - strandat 136.845 kb on + strandat 136.845 kb on + strandat 136.846 kb on - strandat 136.846 kb on - strandat 136.846 kb on - strandat 137.506 kb on - strandat 137.506 kb on - strandat 137.525 kb on - strandat 137.525 kb on - strandat 137.525 kb on - strandat 137.525 kb on - strandat 137.611 kb on + strand, within IAI47_00635at 137.611 kb on + strand, within IAI47_00635at 137.611 kb on + strand, within IAI47_00635at 137.612 kb on - strand, within IAI47_00635at 137.612 kb on - strand, within IAI47_00635at 137.612 kb on - strand, within IAI47_00635at 137.696 kb on + strand, within IAI47_00635at 137.697 kb on - strand, within IAI47_00635at 137.697 kb on - strand, within IAI47_00635at 137.728 kb on + strand, within IAI47_00635at 137.728 kb on + strand, within IAI47_00635at 137.728 kb on + strand, within IAI47_00635at 137.728 kb on + strand, within IAI47_00635at 137.729 kb on - strand, within IAI47_00635at 137.729 kb on - strand, within IAI47_00635at 137.729 kb on - strand, within IAI47_00635at 137.729 kb on - strand, within IAI47_00635at 137.729 kb on - strand, within IAI47_00635at 137.808 kb on + strand, within IAI47_00635at 137.808 kb on + strand, within IAI47_00635at 137.837 kb on + strand, within IAI47_00635at 137.837 kb on + strand, within IAI47_00635at 137.838 kb on - strand, within IAI47_00635at 137.838 kb on - strand, within IAI47_00635at 137.893 kb on + strand, within IAI47_00635at 137.893 kb on + strand, within IAI47_00635at 137.893 kb on + strand, within IAI47_00635at 137.893 kb on + strand, within IAI47_00635at 137.893 kb on + strand, within IAI47_00635at 137.893 kb on - strand, within IAI47_00635at 137.894 kb on - strand, within IAI47_00635at 137.948 kb on + strand, within IAI47_00635at 137.948 kb on + strand, within IAI47_00635at 137.948 kb on + strand, within IAI47_00635at 137.949 kb on - strand, within IAI47_00635at 137.949 kb on - strand, within IAI47_00635at 137.959 kb on + strand, within IAI47_00635at 137.959 kb on + strand, within IAI47_00635at 137.959 kb on + strand, within IAI47_00635at 137.960 kb on - strand, within IAI47_00635at 137.986 kb on + strand, within IAI47_00635at 137.986 kb on + strand, within IAI47_00635at 137.987 kb on - strand, within IAI47_00635at 137.987 kb on - strand, within IAI47_00635at 138.005 kb on - strand, within IAI47_00635at 138.005 kb on - strand, within IAI47_00635at 138.005 kb on - strand, within IAI47_00635at 138.035 kb on + strand, within IAI47_00635at 138.035 kb on + strand, within IAI47_00635at 138.035 kb on + strand, within IAI47_00635at 138.035 kb on + strand, within IAI47_00635at 138.036 kb on - strand, within IAI47_00635at 138.124 kb on + strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.125 kb on - strand, within IAI47_00635at 138.186 kb on + strand, within IAI47_00635at 138.186 kb on + strand, within IAI47_00635at 138.187 kb on - strand, within IAI47_00635at 138.199 kb on + strand, within IAI47_00635at 138.200 kb on - strand, within IAI47_00635at 138.200 kb on - strand, within IAI47_00635at 138.209 kb on + strand, within IAI47_00635at 138.209 kb on + strand, within IAI47_00635at 138.209 kb on + strand, within IAI47_00635at 138.210 kb on - strand, within IAI47_00635at 138.233 kb on + strand, within IAI47_00635at 138.233 kb on + strand, within IAI47_00635at 138.233 kb on + strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.234 kb on - strand, within IAI47_00635at 138.269 kb on - strandat 138.269 kb on - strandat 138.308 kb on + strandat 138.308 kb on + strandat 138.308 kb on + strandat 138.309 kb on - strandat 138.309 kb on - strandat 138.309 kb on - strandat 138.309 kb on - strandat 138.309 kb on - strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.332 kb on + strandat 138.333 kb on - strandat 138.333 kb on - strandat 138.333 kb on - strandat 138.811 kb on - strandat 138.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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136,525 + IAI47_00620 0.60 -0.8
136,525 + IAI47_00620 0.60 +0.1
136,526 - IAI47_00620 0.60 -0.6
136,526 - IAI47_00620 0.60 +2.2
136,526 - IAI47_00620 0.60 +2.3
136,538 + IAI47_00620 0.61 -0.0
136,539 - IAI47_00620 0.62 +0.0
136,539 - IAI47_00620 0.62 +1.9
136,539 - IAI47_00620 0.62 -0.6
136,539 - IAI47_00620 0.62 +0.2
136,539 - IAI47_00620 0.62 +2.6
136,539 - IAI47_00620 0.62 +1.6
136,539 - IAI47_00620 0.62 +2.3
136,553 + IAI47_00620 0.64 +0.8
136,553 + IAI47_00620 0.64 -1.0
136,553 + IAI47_00620 0.64 -1.3
136,553 + IAI47_00620 0.64 -1.7
136,553 + IAI47_00620 0.64 +0.1
136,553 + IAI47_00620 0.64 +1.3
136,554 - IAI47_00620 0.64 +0.0
136,554 - IAI47_00620 0.64 -0.8
136,554 - IAI47_00620 0.64 -1.6
136,554 - IAI47_00620 0.64 +1.0
136,554 - IAI47_00620 0.64 -2.4
136,554 - IAI47_00620 0.64 -0.8
136,556 + IAI47_00620 0.64 -0.0
136,556 + IAI47_00620 0.64 -0.3
136,556 + IAI47_00620 0.64 -1.3
136,556 + IAI47_00620 0.64 +0.8
136,556 + IAI47_00620 0.64 -2.7
136,556 + IAI47_00620 0.64 +2.2
136,556 + IAI47_00620 0.64 +1.4
136,556 + IAI47_00620 0.64 +1.0
136,556 + IAI47_00620 0.64 -1.7
136,556 + IAI47_00620 0.64 +0.2
136,556 + IAI47_00620 0.64 -1.6
136,556 + IAI47_00620 0.64 +2.1
136,557 - IAI47_00620 0.64 +0.2
136,557 - IAI47_00620 0.64 +2.8
136,557 - IAI47_00620 0.64 -2.0
136,557 - IAI47_00620 0.64 -1.1
136,557 - IAI47_00620 0.64 +0.0
136,557 - IAI47_00620 0.64 -0.6
136,557 - IAI47_00620 0.64 +0.5
136,557 - IAI47_00620 0.64 +0.9
136,557 - IAI47_00620 0.64 +1.4
136,557 - IAI47_00620 0.64 -1.0
136,559 + IAI47_00620 0.65 +0.5
136,560 - IAI47_00620 0.65 +2.9
136,560 - IAI47_00620 0.65 -2.2
136,560 - IAI47_00620 0.65 +1.7
136,560 - IAI47_00620 0.65 -1.8
136,560 - IAI47_00620 0.65 +1.7
136,560 - IAI47_00620 0.65 +1.0
136,634 + IAI47_00620 0.76 +1.7
136,634 + IAI47_00620 0.76 -0.1
136,634 + IAI47_00620 0.76 -0.6
136,635 - IAI47_00620 0.76 +0.2
136,711 + IAI47_00620 0.88 -1.6
136,711 + IAI47_00620 0.88 +0.8
136,712 - IAI47_00620 0.88 -1.2
136,712 - IAI47_00620 0.88 +1.5
136,720 + IAI47_00620 0.89 -1.9
136,720 + IAI47_00620 0.89 -0.1
136,720 + IAI47_00620 0.89 -2.4
136,720 + IAI47_00620 0.89 +0.8
136,720 + IAI47_00620 0.89 -2.7
136,720 + IAI47_00620 0.89 -0.0
136,720 + IAI47_00620 0.89 +0.9
136,720 + IAI47_00620 0.89 +1.5
136,720 + IAI47_00620 0.89 +2.0
136,720 + IAI47_00620 0.89 +1.8
136,721 - IAI47_00620 0.89 +0.9
136,721 - IAI47_00620 0.89 +0.7
136,721 - IAI47_00620 0.89 -1.6
136,721 - IAI47_00620 0.89 -0.6
136,721 - IAI47_00620 0.89 +0.5
136,758 + -1.3
136,758 + +1.3
136,758 + +1.6
136,758 + -0.5
136,758 + -1.4
136,758 + -0.6
136,759 - +0.6
136,759 - +1.7
136,759 - -1.4
136,759 - -0.8
136,759 - -0.5
136,759 - -0.5
136,759 - -0.1
136,845 + -0.4
136,845 + -0.1
136,846 - +1.2
136,846 - +0.6
136,846 - -1.7
137,506 - +0.4
137,506 - -0.8
137,525 - -0.3
137,525 - -1.4
137,525 - +1.4
137,525 - -0.4
137,611 + IAI47_00635 0.11 -0.1
137,611 + IAI47_00635 0.11 -1.7
137,611 + IAI47_00635 0.11 +0.7
137,612 - IAI47_00635 0.11 +0.9
137,612 - IAI47_00635 0.11 -1.0
137,612 - IAI47_00635 0.11 -0.6
137,696 + IAI47_00635 0.21 +0.3
137,697 - IAI47_00635 0.21 -0.1
137,697 - IAI47_00635 0.21 -1.5
137,728 + IAI47_00635 0.25 -2.7
137,728 + IAI47_00635 0.25 -3.3
137,728 + IAI47_00635 0.25 -0.8
137,728 + IAI47_00635 0.25 +0.6
137,729 - IAI47_00635 0.25 -0.2
137,729 - IAI47_00635 0.25 -1.4
137,729 - IAI47_00635 0.25 -0.8
137,729 - IAI47_00635 0.25 +2.2
137,729 - IAI47_00635 0.25 -0.2
137,808 + IAI47_00635 0.35 -1.0
137,808 + IAI47_00635 0.35 +0.2
137,837 + IAI47_00635 0.39 -0.4
137,837 + IAI47_00635 0.39 -1.3
137,838 - IAI47_00635 0.39 +0.8
137,838 - IAI47_00635 0.39 -0.7
137,893 + IAI47_00635 0.45 +0.7
137,893 + IAI47_00635 0.45 -0.6
137,893 + IAI47_00635 0.45 -1.3
137,893 + IAI47_00635 0.45 -0.6
137,893 + IAI47_00635 0.45 +0.3
137,893 - IAI47_00635 0.45 -1.3
137,894 - IAI47_00635 0.46 -1.0
137,948 + IAI47_00635 0.52 +1.3
137,948 + IAI47_00635 0.52 -0.4
137,948 + IAI47_00635 0.52 -1.7
137,949 - IAI47_00635 0.52 -1.1
137,949 - IAI47_00635 0.52 -0.3
137,959 + IAI47_00635 0.54 -1.0
137,959 + IAI47_00635 0.54 +1.5
137,959 + IAI47_00635 0.54 +0.7
137,960 - IAI47_00635 0.54 -1.4
137,986 + IAI47_00635 0.57 -1.0
137,986 + IAI47_00635 0.57 -3.0
137,987 - IAI47_00635 0.57 +1.6
137,987 - IAI47_00635 0.57 +0.2
138,005 - IAI47_00635 0.59 -0.2
138,005 - IAI47_00635 0.59 -0.4
138,005 - IAI47_00635 0.59 -1.2
138,035 + IAI47_00635 0.63 +1.4
138,035 + IAI47_00635 0.63 +0.4
138,035 + IAI47_00635 0.63 -0.2
138,035 + IAI47_00635 0.63 -0.0
138,036 - IAI47_00635 0.63 -1.5
138,124 + IAI47_00635 0.74 -0.0
138,125 - IAI47_00635 0.74 +2.8
138,125 - IAI47_00635 0.74 -1.1
138,125 - IAI47_00635 0.74 -2.3
138,125 - IAI47_00635 0.74 -0.5
138,125 - IAI47_00635 0.74 +1.3
138,125 - IAI47_00635 0.74 -0.3
138,186 + IAI47_00635 0.82 -0.4
138,186 + IAI47_00635 0.82 +5.8
138,187 - IAI47_00635 0.82 -1.8
138,199 + IAI47_00635 0.83 +2.2
138,200 - IAI47_00635 0.83 +1.7
138,200 - IAI47_00635 0.83 +0.1
138,209 + IAI47_00635 0.84 +0.3
138,209 + IAI47_00635 0.84 -1.3
138,209 + IAI47_00635 0.84 -0.8
138,210 - IAI47_00635 0.85 +1.4
138,233 + IAI47_00635 0.87 +2.9
138,233 + IAI47_00635 0.87 -2.1
138,233 + IAI47_00635 0.87 -2.5
138,234 - IAI47_00635 0.88 -1.7
138,234 - IAI47_00635 0.88 -0.1
138,234 - IAI47_00635 0.88 -0.4
138,234 - IAI47_00635 0.88 -0.1
138,234 - IAI47_00635 0.88 -0.3
138,234 - IAI47_00635 0.88 +0.2
138,269 - -1.8
138,269 - -2.3
138,308 + -2.0
138,308 + -3.4
138,308 + -1.3
138,309 - -2.7
138,309 - -0.3
138,309 - +0.5
138,309 - +1.5
138,309 - -1.3
138,332 + -0.4
138,332 + -2.2
138,332 + -1.3
138,332 + -2.4
138,332 + -1.7
138,332 + +0.9
138,332 + +0.6
138,332 + +1.6
138,332 + -0.4
138,333 - +0.4
138,333 - -1.8
138,333 - +0.6
138,811 - +2.0
138,811 - -0.1

Or see this region's nucleotide sequence