Experiment: Varel_Bryant_medium_Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4255 and BT4256 overlap by 4 nucleotides BT4256 and BT4257 overlap by 14 nucleotides BT4257 and BT4258 overlap by 56 nucleotides BT4258 and BT4259 overlap by 89 nucleotides
BT4255: BT4255 - DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file), at 5,606,265 to 5,607,374
BT4255
BT4256: BT4256 - conserved hypothetical protein (NCBI ptt file), at 5,607,371 to 5,607,658
BT4256
BT4257: BT4257 - putative histidinol-phosphatase (NCBI ptt file), at 5,607,645 to 5,608,436
BT4257
BT4258: BT4258 - putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file), at 5,608,381 to 5,608,971
BT4258
BT4259: BT4259 - carboxy-terminal processing protease precursor (NCBI ptt file), at 5,608,883 to 5,610,631
BT4259
Position (kb) 5607
5608
5609 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5606.732 kb on + strand, within BT4255 at 5606.753 kb on + strand, within BT4255 at 5606.753 kb on + strand, within BT4255 at 5607.029 kb on + strand, within BT4255 at 5607.044 kb on + strand, within BT4255 at 5607.182 kb on + strand, within BT4255 at 5607.260 kb on + strand, within BT4255 at 5607.269 kb on + strand at 5607.346 kb on + strand at 5607.724 kb on + strand at 5607.743 kb on - strand, within BT4257 at 5607.799 kb on - strand, within BT4257 at 5607.799 kb on - strand, within BT4257 at 5607.832 kb on - strand, within BT4257 at 5607.864 kb on + strand, within BT4257 at 5607.864 kb on + strand, within BT4257 at 5607.865 kb on - strand, within BT4257 at 5607.870 kb on - strand, within BT4257 at 5607.929 kb on + strand, within BT4257 at 5607.986 kb on - strand, within BT4257 at 5608.044 kb on - strand, within BT4257 at 5608.048 kb on - strand, within BT4257 at 5608.059 kb on - strand, within BT4257 at 5608.072 kb on + strand, within BT4257 at 5608.142 kb on + strand, within BT4257 at 5608.143 kb on - strand, within BT4257 at 5608.165 kb on + strand, within BT4257 at 5608.220 kb on - strand, within BT4257 at 5608.249 kb on - strand, within BT4257 at 5608.253 kb on - strand, within BT4257 at 5608.295 kb on - strand, within BT4257 at 5608.445 kb on - strand, within BT4258 at 5608.446 kb on + strand, within BT4258 at 5608.450 kb on + strand, within BT4258 at 5608.451 kb on - strand, within BT4258 at 5608.524 kb on + strand, within BT4258 at 5608.525 kb on - strand, within BT4258 at 5608.539 kb on + strand, within BT4258 at 5608.560 kb on - strand, within BT4258 at 5608.560 kb on - strand, within BT4258 at 5608.560 kb on - strand, within BT4258 at 5608.563 kb on - strand, within BT4258 at 5608.630 kb on + strand, within BT4258 at 5608.630 kb on + strand, within BT4258 at 5608.713 kb on - strand, within BT4258 at 5608.721 kb on - strand, within BT4258 at 5608.744 kb on + strand, within BT4258 at 5608.745 kb on - strand, within BT4258 at 5608.831 kb on + strand, within BT4258 at 5608.831 kb on + strand, within BT4258 at 5608.894 kb on + strand at 5608.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose remove 5,606,732 + BT4255 0.42 -0.3 5,606,753 + BT4255 0.44 -1.2 5,606,753 + BT4255 0.44 -0.8 5,607,029 + BT4255 0.69 +0.1 5,607,044 + BT4255 0.70 -2.8 5,607,182 + BT4255 0.83 -1.9 5,607,260 + BT4255 0.90 -0.4 5,607,269 + +1.1 5,607,346 + -1.3 5,607,724 + -2.5 5,607,743 - BT4257 0.12 -1.3 5,607,799 - BT4257 0.19 -2.1 5,607,799 - BT4257 0.19 -1.8 5,607,832 - BT4257 0.24 -0.8 5,607,864 + BT4257 0.28 -1.8 5,607,864 + BT4257 0.28 -0.2 5,607,865 - BT4257 0.28 +1.6 5,607,870 - BT4257 0.28 -0.7 5,607,929 + BT4257 0.36 -1.0 5,607,986 - BT4257 0.43 -2.3 5,608,044 - BT4257 0.50 -1.6 5,608,048 - BT4257 0.51 -1.6 5,608,059 - BT4257 0.52 +0.2 5,608,072 + BT4257 0.54 -1.9 5,608,142 + BT4257 0.63 -0.9 5,608,143 - BT4257 0.63 -1.9 5,608,165 + BT4257 0.66 -0.4 5,608,220 - BT4257 0.73 +0.2 5,608,249 - BT4257 0.76 -1.9 5,608,253 - BT4257 0.77 -2.8 5,608,295 - BT4257 0.82 -0.9 5,608,445 - BT4258 0.11 -0.4 5,608,446 + BT4258 0.11 -1.9 5,608,450 + BT4258 0.12 +1.0 5,608,451 - BT4258 0.12 -1.6 5,608,524 + BT4258 0.24 -0.0 5,608,525 - BT4258 0.24 -1.3 5,608,539 + BT4258 0.27 -1.9 5,608,560 - BT4258 0.30 -1.4 5,608,560 - BT4258 0.30 -1.8 5,608,560 - BT4258 0.30 -1.0 5,608,563 - BT4258 0.31 -1.8 5,608,630 + BT4258 0.42 -1.6 5,608,630 + BT4258 0.42 +1.0 5,608,713 - BT4258 0.56 -1.9 5,608,721 - BT4258 0.58 -2.3 5,608,744 + BT4258 0.61 +0.3 5,608,745 - BT4258 0.62 -0.0 5,608,831 + BT4258 0.76 +0.6 5,608,831 + BT4258 0.76 +0.6 5,608,894 + +0.2 5,608,941 + -1.1
Or see this region's nucleotide sequence