Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0366

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpabA and DVU0365 overlap by 4 nucleotidesDVU0365 and DVU0366 overlap by 10 nucleotidesDVU0366 and DVU0367 are separated by 266 nucleotides DVU0364: pabA - para-aminobenzoate/anthranilate synthase glutamine amidotransferase (TIGR), at 413,780 to 414,334 pabA DVU0365: DVU0365 - conserved hypothetical protein (TIGR), at 414,331 to 415,086 DVU0365 DVU0366: DVU0366 - 5-formyltetrahydrofolate cyclo-ligase family protein (TIGR), at 415,077 to 415,928 DVU0366 DVU0367: DVU0367 - Ser/Thr protein phosphatase family protein (TIGR), at 416,195 to 416,929 DVU0367 Position (kb) 415 416Strain fitness (log2 ratio) -2 -1 0 1at 414.103 kb on + strand, within pabAat 414.149 kb on - strand, within pabAat 414.186 kb on - strand, within pabAat 414.224 kb on + strand, within pabAat 414.275 kb on - strand, within pabAat 414.312 kb on + strandat 414.345 kb on + strandat 414.350 kb on + strandat 414.373 kb on + strandat 414.425 kb on - strand, within DVU0365at 414.430 kb on - strand, within DVU0365at 414.430 kb on - strand, within DVU0365at 414.438 kb on - strand, within DVU0365at 414.438 kb on - strand, within DVU0365at 414.440 kb on - strand, within DVU0365at 414.440 kb on - strand, within DVU0365at 414.440 kb on - strand, within DVU0365at 414.501 kb on + strand, within DVU0365at 414.509 kb on - strand, within DVU0365at 414.509 kb on - strand, within DVU0365at 414.602 kb on - strand, within DVU0365at 414.627 kb on + strand, within DVU0365at 414.634 kb on + strand, within DVU0365at 414.708 kb on + strand, within DVU0365at 414.713 kb on + strand, within DVU0365at 414.750 kb on - strand, within DVU0365at 414.838 kb on + strand, within DVU0365at 414.887 kb on - strand, within DVU0365at 415.004 kb on - strand, within DVU0365at 415.018 kb on - strandat 415.075 kb on + strandat 415.097 kb on + strandat 415.100 kb on - strandat 415.102 kb on + strandat 415.105 kb on - strandat 415.125 kb on + strandat 415.335 kb on + strand, within DVU0366at 415.335 kb on + strand, within DVU0366at 415.343 kb on - strand, within DVU0366at 415.395 kb on - strand, within DVU0366at 415.395 kb on - strand, within DVU0366at 415.400 kb on + strand, within DVU0366at 415.408 kb on - strand, within DVU0366at 415.433 kb on - strand, within DVU0366at 415.440 kb on + strand, within DVU0366at 415.448 kb on - strand, within DVU0366at 415.466 kb on + strand, within DVU0366at 415.513 kb on + strand, within DVU0366at 415.526 kb on + strand, within DVU0366at 415.537 kb on + strand, within DVU0366at 415.590 kb on + strand, within DVU0366at 415.663 kb on + strand, within DVU0366at 415.676 kb on - strand, within DVU0366at 415.742 kb on - strand, within DVU0366at 415.785 kb on - strand, within DVU0366at 415.814 kb on + strand, within DVU0366at 415.846 kb on - strandat 415.880 kb on + strandat 415.937 kb on - strandat 416.058 kb on + strandat 416.081 kb on - strandat 416.097 kb on + strandat 416.146 kb on - strandat 416.146 kb on - strandat 416.273 kb on - strand, within DVU0367at 416.313 kb on - strand, within DVU0367at 416.313 kb on - strand, within DVU0367at 416.376 kb on + strand, within DVU0367at 416.405 kb on - strand, within DVU0367at 416.485 kb on - strand, within DVU0367at 416.498 kb on - strand, within DVU0367at 416.552 kb on - strand, within DVU0367at 416.559 kb on + strand, within DVU0367at 416.567 kb on + strand, within DVU0367at 416.604 kb on + strand, within DVU0367at 416.615 kb on - strand, within DVU0367at 416.636 kb on - strand, within DVU0367at 416.686 kb on + strand, within DVU0367at 416.687 kb on + strand, within DVU0367at 416.695 kb on - strand, within DVU0367at 416.708 kb on + strand, within DVU0367at 416.720 kb on + strand, within DVU0367at 416.738 kb on - strand, within DVU0367at 416.767 kb on - strand, within DVU0367at 416.813 kb on - strand, within DVU0367at 416.839 kb on - strand, within DVU0367at 416.847 kb on - strand, within DVU0367at 416.847 kb on - strand, within DVU0367

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
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414,103 + pabA DVU0364 0.58 +0.3
414,149 - pabA DVU0364 0.66 -0.1
414,186 - pabA DVU0364 0.73 +0.1
414,224 + pabA DVU0364 0.80 -0.2
414,275 - pabA DVU0364 0.89 -0.1
414,312 + -0.2
414,345 + +0.1
414,350 + -0.3
414,373 + +1.2
414,425 - DVU0365 0.12 -0.6
414,430 - DVU0365 0.13 +0.0
414,430 - DVU0365 0.13 -0.8
414,438 - DVU0365 0.14 -0.7
414,438 - DVU0365 0.14 -0.2
414,440 - DVU0365 0.14 -0.2
414,440 - DVU0365 0.14 -0.2
414,440 - DVU0365 0.14 +0.2
414,501 + DVU0365 0.22 +1.6
414,509 - DVU0365 0.24 -0.2
414,509 - DVU0365 0.24 +0.6
414,602 - DVU0365 0.36 +0.1
414,627 + DVU0365 0.39 +0.2
414,634 + DVU0365 0.40 +0.2
414,708 + DVU0365 0.50 +0.3
414,713 + DVU0365 0.51 -0.8
414,750 - DVU0365 0.55 +0.0
414,838 + DVU0365 0.67 -0.4
414,887 - DVU0365 0.74 +1.7
415,004 - DVU0365 0.89 -0.3
415,018 - -0.1
415,075 + -0.3
415,097 + -0.8
415,100 - -0.2
415,102 + +0.0
415,105 - +0.4
415,125 + -1.0
415,335 + DVU0366 0.30 -0.5
415,335 + DVU0366 0.30 -1.1
415,343 - DVU0366 0.31 -1.4
415,395 - DVU0366 0.37 -0.8
415,395 - DVU0366 0.37 -0.9
415,400 + DVU0366 0.38 -0.8
415,408 - DVU0366 0.39 -1.5
415,433 - DVU0366 0.42 -0.3
415,440 + DVU0366 0.43 -0.7
415,448 - DVU0366 0.44 -1.0
415,466 + DVU0366 0.46 -0.5
415,513 + DVU0366 0.51 -2.3
415,526 + DVU0366 0.53 -1.2
415,537 + DVU0366 0.54 -0.9
415,590 + DVU0366 0.60 -1.6
415,663 + DVU0366 0.69 -0.6
415,676 - DVU0366 0.70 -0.0
415,742 - DVU0366 0.78 -0.4
415,785 - DVU0366 0.83 +0.6
415,814 + DVU0366 0.87 -0.7
415,846 - -1.3
415,880 + -1.5
415,937 - -0.4
416,058 + +0.5
416,081 - -2.0
416,097 + +1.6
416,146 - +0.8
416,146 - +0.2
416,273 - DVU0367 0.11 -0.7
416,313 - DVU0367 0.16 +0.2
416,313 - DVU0367 0.16 -0.5
416,376 + DVU0367 0.25 -0.2
416,405 - DVU0367 0.29 -0.5
416,485 - DVU0367 0.39 -0.8
416,498 - DVU0367 0.41 +0.4
416,552 - DVU0367 0.49 -0.2
416,559 + DVU0367 0.50 -0.3
416,567 + DVU0367 0.51 +0.1
416,604 + DVU0367 0.56 -0.1
416,615 - DVU0367 0.57 +0.4
416,636 - DVU0367 0.60 +0.1
416,686 + DVU0367 0.67 -0.5
416,687 + DVU0367 0.67 -0.8
416,695 - DVU0367 0.68 +0.6
416,708 + DVU0367 0.70 -0.8
416,720 + DVU0367 0.71 -0.3
416,738 - DVU0367 0.74 +0.8
416,767 - DVU0367 0.78 -1.8
416,813 - DVU0367 0.84 +1.2
416,839 - DVU0367 0.88 +0.0
416,847 - DVU0367 0.89 -0.1
416,847 - DVU0367 0.89 +0.6

Or see this region's nucleotide sequence