Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serA and DVU0340 are separated by 142 nucleotides DVU0340 and kdsB are separated by 9 nucleotides kdsB and DVU0342 are separated by 312 nucleotides
DVU0339: serA - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 384,768 to 385,673
serA
DVU0340: DVU0340 - acetyltransferase, CysE/LacA/LpxA/NodL family (TIGR), at 385,816 to 386,409
DVU0340
DVU0341: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (TIGR), at 386,419 to 387,189
kdsB
DVU0342: DVU0342 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 387,502 to 388,416
DVU0342
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1 at 385.431 kb on + strand, within serA at 385.431 kb on + strand, within serA at 385.431 kb on + strand, within serA at 385.439 kb on - strand, within serA at 385.439 kb on - strand, within serA at 385.439 kb on - strand, within serA at 385.439 kb on - strand, within serA at 385.439 kb on - strand, within serA at 385.530 kb on + strand, within serA at 385.617 kb on + strand at 385.625 kb on - strand at 385.625 kb on - strand at 385.686 kb on + strand at 385.760 kb on + strand at 385.761 kb on + strand at 385.796 kb on - strand at 385.801 kb on - strand at 385.803 kb on + strand at 385.821 kb on + strand at 385.879 kb on - strand, within DVU0340 at 385.879 kb on - strand, within DVU0340 at 385.907 kb on + strand, within DVU0340 at 385.950 kb on - strand, within DVU0340 at 386.159 kb on + strand, within DVU0340 at 386.167 kb on + strand, within DVU0340 at 386.167 kb on - strand, within DVU0340 at 386.191 kb on - strand, within DVU0340 at 386.230 kb on + strand, within DVU0340 at 386.305 kb on - strand, within DVU0340 at 386.333 kb on + strand, within DVU0340 at 386.356 kb on - strand at 386.372 kb on + strand at 386.374 kb on + strand at 386.382 kb on - strand at 387.217 kb on + strand at 387.217 kb on + strand at 387.253 kb on - strand at 387.311 kb on - strand at 387.334 kb on - strand at 387.426 kb on - strand at 387.520 kb on - strand at 387.528 kb on + strand at 387.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% remove 385,431 + serA DVU0339 0.73 -2.0 385,431 + serA DVU0339 0.73 -1.8 385,431 + serA DVU0339 0.73 -2.2 385,439 - serA DVU0339 0.74 -1.7 385,439 - serA DVU0339 0.74 -2.2 385,439 - serA DVU0339 0.74 -1.3 385,439 - serA DVU0339 0.74 -0.7 385,439 - serA DVU0339 0.74 -1.6 385,530 + serA DVU0339 0.84 -1.5 385,617 + -1.6 385,625 - -0.7 385,625 - -1.5 385,686 + +0.0 385,760 + -0.2 385,761 + +0.6 385,796 - -0.1 385,801 - +0.5 385,803 + +0.1 385,821 + -0.2 385,879 - DVU0340 0.11 -0.5 385,879 - DVU0340 0.11 -0.0 385,907 + DVU0340 0.15 -1.4 385,950 - DVU0340 0.23 -0.7 386,159 + DVU0340 0.58 +0.2 386,167 + DVU0340 0.59 -1.1 386,167 - DVU0340 0.59 +0.2 386,191 - DVU0340 0.63 -0.7 386,230 + DVU0340 0.70 -0.4 386,305 - DVU0340 0.82 -0.4 386,333 + DVU0340 0.87 -0.2 386,356 - -0.7 386,372 + -1.7 386,374 + -0.7 386,382 - -0.5 387,217 + -0.1 387,217 + -0.0 387,253 - +0.1 387,311 - -0.0 387,334 - +0.2 387,426 - -0.1 387,520 - -0.5 387,528 + -1.9 387,551 - -0.5
Or see this region's nucleotide sequence