Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tgt and DVU0727 are separated by 44 nucleotides DVU0727 and DVU0728 are separated by 28 nucleotides DVU0728 and DVU0729 are separated by 221 nucleotides
DVU0726: tgt - queuine tRNA-ribosyltransferase (TIGR), at 810,938 to 812,065
tgt
DVU0727: DVU0727 - conserved hypothetical protein (TIGR), at 812,110 to 812,784
DVU0727
DVU0728: DVU0728 - hypothetical protein (TIGR), at 812,813 to 812,983
DVU0728
DVU0729: DVU0729 - hypothetical protein (TIGR), at 813,205 to 813,660
DVU0729
Position (kb) 812
813 Strain fitness (log2 ratio) -1
0
1 at 811.868 kb on + strand, within tgt at 811.912 kb on - strand, within tgt at 811.988 kb on + strand at 811.996 kb on - strand at 812.061 kb on + strand at 812.150 kb on - strand at 812.207 kb on + strand, within DVU0727 at 812.214 kb on + strand, within DVU0727 at 812.301 kb on + strand, within DVU0727 at 812.358 kb on + strand, within DVU0727 at 812.364 kb on + strand, within DVU0727 at 812.372 kb on - strand, within DVU0727 at 812.372 kb on - strand, within DVU0727 at 812.376 kb on + strand, within DVU0727 at 812.386 kb on + strand, within DVU0727 at 812.394 kb on - strand, within DVU0727 at 812.396 kb on - strand, within DVU0727 at 812.411 kb on - strand, within DVU0727 at 812.411 kb on - strand, within DVU0727 at 812.426 kb on - strand, within DVU0727 at 812.491 kb on + strand, within DVU0727 at 812.499 kb on - strand, within DVU0727 at 812.565 kb on + strand, within DVU0727 at 812.596 kb on - strand, within DVU0727 at 812.655 kb on - strand, within DVU0727 at 813.114 kb on + strand at 813.122 kb on - strand at 813.211 kb on - strand at 813.226 kb on - strand at 813.239 kb on - strand at 813.257 kb on - strand, within DVU0729 at 813.299 kb on - strand, within DVU0729 at 813.327 kb on + strand, within DVU0729 at 813.337 kb on + strand, within DVU0729 at 813.577 kb on + strand, within DVU0729 at 813.577 kb on + strand, within DVU0729 at 813.591 kb on + strand, within DVU0729 at 813.648 kb on + strand at 813.685 kb on + strand at 813.708 kb on + strand at 813.742 kb on - strand at 813.773 kb on - strand at 813.825 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% remove 811,868 + tgt DVU0726 0.82 -1.6 811,912 - tgt DVU0726 0.86 -1.4 811,988 + -1.6 811,996 - -1.2 812,061 + -1.7 812,150 - +0.7 812,207 + DVU0727 0.14 +0.6 812,214 + DVU0727 0.15 +0.3 812,301 + DVU0727 0.28 -1.2 812,358 + DVU0727 0.37 +1.5 812,364 + DVU0727 0.38 +0.2 812,372 - DVU0727 0.39 +0.1 812,372 - DVU0727 0.39 +0.4 812,376 + DVU0727 0.39 -0.1 812,386 + DVU0727 0.41 +0.2 812,394 - DVU0727 0.42 +0.0 812,396 - DVU0727 0.42 -0.1 812,411 - DVU0727 0.45 -0.2 812,411 - DVU0727 0.45 +0.2 812,426 - DVU0727 0.47 +0.2 812,491 + DVU0727 0.56 +0.1 812,499 - DVU0727 0.58 -0.7 812,565 + DVU0727 0.67 -0.7 812,596 - DVU0727 0.72 -0.3 812,655 - DVU0727 0.81 +0.4 813,114 + -0.1 813,122 - -0.9 813,211 - -0.9 813,226 - +0.5 813,239 - -1.0 813,257 - DVU0729 0.11 -0.0 813,299 - DVU0729 0.21 +0.0 813,327 + DVU0729 0.27 +0.1 813,337 + DVU0729 0.29 +0.5 813,577 + DVU0729 0.82 +0.1 813,577 + DVU0729 0.82 -0.6 813,591 + DVU0729 0.85 +0.1 813,648 + +0.9 813,685 + +0.4 813,708 + +0.1 813,742 - +1.1 813,773 - +0.4 813,825 + -0.4
Or see this region's nucleotide sequence