Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purT and DVU0724 are separated by 226 nucleotides DVU0724 and DVU0725 are separated by 393 nucleotides
DVU0723: purT - phosphoribosylglycinamide formyltransferase 2 (TIGR), at 805,115 to 806,296
purT
DVU0724: DVU0724 - sodium/alanine symporter family protein (TIGR), at 806,523 to 807,929
DVU0724
DVU0725: DVU0725 - conserved hypothetical protein (TIGR), at 808,323 to 810,470
DVU0725
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2 at 805.567 kb on - strand, within purT at 805.567 kb on - strand, within purT at 805.604 kb on + strand, within purT at 805.612 kb on - strand, within purT at 805.612 kb on - strand, within purT at 805.656 kb on - strand, within purT at 805.772 kb on - strand, within purT at 805.929 kb on + strand, within purT at 805.937 kb on + strand, within purT at 805.966 kb on + strand, within purT at 806.155 kb on + strand, within purT at 806.217 kb on + strand at 806.283 kb on + strand at 806.360 kb on - strand at 806.535 kb on - strand at 806.665 kb on - strand, within DVU0724 at 806.773 kb on - strand, within DVU0724 at 806.817 kb on - strand, within DVU0724 at 806.909 kb on + strand, within DVU0724 at 806.919 kb on - strand, within DVU0724 at 806.924 kb on - strand, within DVU0724 at 807.115 kb on - strand, within DVU0724 at 807.139 kb on + strand, within DVU0724 at 807.185 kb on + strand, within DVU0724 at 807.193 kb on - strand, within DVU0724 at 807.217 kb on - strand, within DVU0724 at 807.268 kb on + strand, within DVU0724 at 807.280 kb on + strand, within DVU0724 at 807.357 kb on + strand, within DVU0724 at 807.421 kb on + strand, within DVU0724 at 807.421 kb on + strand, within DVU0724 at 807.429 kb on - strand, within DVU0724 at 807.429 kb on - strand, within DVU0724 at 807.439 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.515 kb on + strand, within DVU0724 at 807.515 kb on + strand, within DVU0724 at 807.670 kb on + strand, within DVU0724 at 807.678 kb on - strand, within DVU0724 at 807.678 kb on - strand, within DVU0724 at 807.721 kb on + strand, within DVU0724 at 807.726 kb on - strand, within DVU0724 at 807.789 kb on + strand at 807.799 kb on + strand at 807.822 kb on - strand at 807.843 kb on + strand at 807.864 kb on - strand at 807.914 kb on + strand at 807.925 kb on + strand at 807.995 kb on + strand at 808.003 kb on - strand at 808.151 kb on + strand at 808.153 kb on + strand at 808.294 kb on - strand at 808.367 kb on - strand at 808.404 kb on - strand at 808.420 kb on - strand at 808.497 kb on + strand at 808.505 kb on - strand at 808.517 kb on + strand at 808.525 kb on - strand at 808.560 kb on + strand, within DVU0725 at 808.565 kb on + strand, within DVU0725 at 808.664 kb on - strand, within DVU0725 at 808.697 kb on - strand, within DVU0725 at 808.746 kb on - strand, within DVU0725 at 808.829 kb on + strand, within DVU0725 at 808.889 kb on + strand, within DVU0725 at 808.899 kb on - strand, within DVU0725 at 808.919 kb on + strand, within DVU0725
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% remove 805,567 - purT DVU0723 0.38 -1.0 805,567 - purT DVU0723 0.38 -1.0 805,604 + purT DVU0723 0.41 +0.2 805,612 - purT DVU0723 0.42 +0.2 805,612 - purT DVU0723 0.42 +0.7 805,656 - purT DVU0723 0.46 -0.1 805,772 - purT DVU0723 0.56 +0.3 805,929 + purT DVU0723 0.69 +0.9 805,937 + purT DVU0723 0.70 -0.5 805,966 + purT DVU0723 0.72 -0.2 806,155 + purT DVU0723 0.88 -0.6 806,217 + +0.3 806,283 + +0.0 806,360 - +0.7 806,535 - +0.1 806,665 - DVU0724 0.10 -0.8 806,773 - DVU0724 0.18 -0.9 806,817 - DVU0724 0.21 -0.9 806,909 + DVU0724 0.27 -1.2 806,919 - DVU0724 0.28 -0.2 806,924 - DVU0724 0.29 +0.1 807,115 - DVU0724 0.42 -0.2 807,139 + DVU0724 0.44 -0.1 807,185 + DVU0724 0.47 -0.6 807,193 - DVU0724 0.48 -0.7 807,217 - DVU0724 0.49 +0.8 807,268 + DVU0724 0.53 -0.6 807,280 + DVU0724 0.54 +1.3 807,357 + DVU0724 0.59 +0.7 807,421 + DVU0724 0.64 -0.6 807,421 + DVU0724 0.64 -0.3 807,429 - DVU0724 0.64 -0.6 807,429 - DVU0724 0.64 +0.1 807,439 - DVU0724 0.65 -0.4 807,484 - DVU0724 0.68 +0.1 807,484 - DVU0724 0.68 -0.2 807,484 - DVU0724 0.68 +1.9 807,515 + DVU0724 0.71 +1.1 807,515 + DVU0724 0.71 +0.1 807,670 + DVU0724 0.82 -0.7 807,678 - DVU0724 0.82 -0.1 807,678 - DVU0724 0.82 -0.4 807,721 + DVU0724 0.85 +1.6 807,726 - DVU0724 0.86 -0.0 807,789 + -0.4 807,799 + -1.1 807,822 - -1.8 807,843 + -0.4 807,864 - -0.8 807,914 + -0.3 807,925 + -2.2 807,995 + -0.9 808,003 - +0.1 808,151 + -0.6 808,153 + -0.7 808,294 - -1.0 808,367 - -0.1 808,404 - -0.0 808,420 - -0.9 808,497 + +0.1 808,505 - +0.0 808,517 + -0.3 808,525 - -0.1 808,560 + DVU0725 0.11 -0.0 808,565 + DVU0725 0.11 -0.1 808,664 - DVU0725 0.16 -0.4 808,697 - DVU0725 0.17 +0.9 808,746 - DVU0725 0.20 -0.5 808,829 + DVU0725 0.24 +0.3 808,889 + DVU0725 0.26 +0.3 808,899 - DVU0725 0.27 -0.2 808,919 + DVU0725 0.28 -0.2
Or see this region's nucleotide sequence