Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0664 and DVU0665 overlap by 4 nucleotides DVU0665 and DVU0666 are separated by 96 nucleotides DVU0666 and DVU0667 are separated by 113 nucleotides
DVU0664: DVU0664 - cysteine desulfurase (TIGR), at 735,449 to 736,633
DVU0664
DVU0665: DVU0665 - nitrogen fixation protein nifU (TIGR), at 736,630 to 737,475
DVU0665
DVU0666: DVU0666 - HD domain protein (TIGR), at 737,572 to 738,570
DVU0666
DVU0667: DVU0667 - HD domain protein (TIGR), at 738,684 to 739,673
DVU0667
Position (kb) 737
738
739 Strain fitness (log2 ratio) -1
0
1
2 at 736.572 kb on + strand at 736.582 kb on + strand at 736.587 kb on + strand at 736.665 kb on - strand at 736.746 kb on + strand, within DVU0665 at 736.754 kb on - strand, within DVU0665 at 736.974 kb on - strand, within DVU0665 at 737.095 kb on + strand, within DVU0665 at 737.130 kb on - strand, within DVU0665 at 737.148 kb on + strand, within DVU0665 at 737.246 kb on + strand, within DVU0665 at 737.246 kb on + strand, within DVU0665 at 737.254 kb on - strand, within DVU0665 at 737.254 kb on - strand, within DVU0665 at 737.265 kb on + strand, within DVU0665 at 737.311 kb on - strand, within DVU0665 at 737.399 kb on - strand at 737.506 kb on + strand at 737.524 kb on + strand at 737.535 kb on - strand at 737.617 kb on - strand at 737.673 kb on - strand, within DVU0666 at 737.674 kb on - strand, within DVU0666 at 737.710 kb on - strand, within DVU0666 at 737.782 kb on + strand, within DVU0666 at 737.782 kb on + strand, within DVU0666 at 737.820 kb on + strand, within DVU0666 at 737.997 kb on + strand, within DVU0666 at 738.012 kb on + strand, within DVU0666 at 738.076 kb on + strand, within DVU0666 at 738.194 kb on - strand, within DVU0666 at 738.277 kb on - strand, within DVU0666 at 738.289 kb on + strand, within DVU0666 at 738.432 kb on + strand, within DVU0666 at 738.477 kb on - strand at 738.542 kb on + strand at 738.672 kb on - strand at 738.794 kb on + strand, within DVU0667 at 738.803 kb on + strand, within DVU0667 at 738.858 kb on - strand, within DVU0667 at 738.883 kb on + strand, within DVU0667 at 738.883 kb on + strand, within DVU0667 at 738.894 kb on + strand, within DVU0667 at 738.950 kb on + strand, within DVU0667 at 738.958 kb on - strand, within DVU0667 at 738.960 kb on + strand, within DVU0667 at 738.968 kb on - strand, within DVU0667 at 739.011 kb on + strand, within DVU0667 at 739.035 kb on + strand, within DVU0667 at 739.092 kb on - strand, within DVU0667 at 739.123 kb on - strand, within DVU0667 at 739.191 kb on - strand, within DVU0667 at 739.198 kb on - strand, within DVU0667 at 739.222 kb on + strand, within DVU0667 at 739.248 kb on + strand, within DVU0667 at 739.387 kb on + strand, within DVU0667 at 739.387 kb on + strand, within DVU0667 at 739.465 kb on - strand, within DVU0667 at 739.535 kb on - strand, within DVU0667 at 739.545 kb on - strand, within DVU0667
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% remove 736,572 + +0.1 736,582 + -0.0 736,587 + -0.4 736,665 - +0.5 736,746 + DVU0665 0.14 -0.5 736,754 - DVU0665 0.15 +0.3 736,974 - DVU0665 0.41 -0.8 737,095 + DVU0665 0.55 -0.1 737,130 - DVU0665 0.59 -0.3 737,148 + DVU0665 0.61 +1.1 737,246 + DVU0665 0.73 +0.3 737,246 + DVU0665 0.73 -0.0 737,254 - DVU0665 0.74 -1.3 737,254 - DVU0665 0.74 -1.2 737,265 + DVU0665 0.75 +1.4 737,311 - DVU0665 0.80 -0.2 737,399 - -0.0 737,506 + -0.6 737,524 + +0.3 737,535 - +2.7 737,617 - -1.3 737,673 - DVU0666 0.10 +0.6 737,674 - DVU0666 0.10 -0.7 737,710 - DVU0666 0.14 -0.2 737,782 + DVU0666 0.21 +1.4 737,782 + DVU0666 0.21 -0.2 737,820 + DVU0666 0.25 +0.1 737,997 + DVU0666 0.43 +1.3 738,012 + DVU0666 0.44 +1.1 738,076 + DVU0666 0.50 +1.4 738,194 - DVU0666 0.62 -0.0 738,277 - DVU0666 0.71 +0.5 738,289 + DVU0666 0.72 +0.4 738,432 + DVU0666 0.86 +0.1 738,477 - +0.2 738,542 + +0.7 738,672 - -0.5 738,794 + DVU0667 0.11 -0.4 738,803 + DVU0667 0.12 +1.1 738,858 - DVU0667 0.18 +0.0 738,883 + DVU0667 0.20 -0.3 738,883 + DVU0667 0.20 +1.1 738,894 + DVU0667 0.21 -0.5 738,950 + DVU0667 0.27 -0.2 738,958 - DVU0667 0.28 +0.1 738,960 + DVU0667 0.28 +0.1 738,968 - DVU0667 0.29 -0.5 739,011 + DVU0667 0.33 +0.9 739,035 + DVU0667 0.35 +0.0 739,092 - DVU0667 0.41 +0.3 739,123 - DVU0667 0.44 +0.5 739,191 - DVU0667 0.51 -0.5 739,198 - DVU0667 0.52 -0.3 739,222 + DVU0667 0.54 -0.6 739,248 + DVU0667 0.57 +0.3 739,387 + DVU0667 0.71 -0.4 739,387 + DVU0667 0.71 -1.0 739,465 - DVU0667 0.79 -0.2 739,535 - DVU0667 0.86 +0.1 739,545 - DVU0667 0.87 -0.2
Or see this region's nucleotide sequence