Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0556 and DVU0557 overlap by 7 nucleotides DVU0557 and DORF28817 are separated by 66 nucleotides DORF28817 and DVU0560 are separated by 172 nucleotides DVU0560 and DVU0561 are separated by 37 nucleotides
DVU0556: DVU0556 - ISDvu3, transposase OrfA (TIGR), at 624,615 to 624,878
DVU0556
DVU0557: DVU0557 - ISDvu3, transposase OrfB, authentic point mutation (TIGR), at 624,872 to 625,726
DVU0557
DORF28817: DORF28817 - no description, at 625,793 to 626,467
DORF28817
DVU0560: DVU0560 - conserved domain protein (TIGR), at 626,640 to 627,134
DVU0560
DVU0561: DVU0561 - glycosyl transferase, group 1 family protein (TIGR), at 627,172 to 628,275
DVU0561
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.817 kb on - strand, within DVU0556 at 624.952 kb on + strand at 624.976 kb on + strand, within DVU0557 at 624.998 kb on + strand, within DVU0557 at 625.031 kb on + strand, within DVU0557 at 625.088 kb on + strand, within DVU0557 at 625.110 kb on + strand, within DVU0557 at 625.397 kb on + strand, within DVU0557 at 625.405 kb on - strand, within DVU0557 at 625.445 kb on + strand, within DVU0557 at 625.447 kb on + strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.804 kb on + strand at 626.264 kb on + strand, within DORF28817 at 626.312 kb on + strand, within DORF28817
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% remove 624,817 - DVU0556 0.77 +0.2 624,952 + -0.0 624,976 + DVU0557 0.12 -0.0 624,998 + DVU0557 0.15 +0.1 625,031 + DVU0557 0.19 -0.5 625,088 + DVU0557 0.25 -0.5 625,110 + DVU0557 0.28 -1.9 625,397 + DVU0557 0.61 +1.1 625,405 - DVU0557 0.62 +0.1 625,445 + DVU0557 0.67 +0.1 625,447 + DVU0557 0.67 -0.2 625,455 - DVU0557 0.68 -0.2 625,455 - DVU0557 0.68 +2.1 625,455 - DVU0557 0.68 +0.1 625,804 + +0.1 626,264 + DORF28817 0.70 -0.0 626,312 + DORF28817 0.77 +0.1
Or see this region's nucleotide sequence