Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4063

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4062 and Pf1N1B4_4063 overlap by 1 nucleotidesPf1N1B4_4063 and Pf1N1B4_4064 are separated by 15 nucleotides Pf1N1B4_4062 - FIG065221: Holliday junction DNA helicase, at 4,516,297 to 4,517,619 _4062 Pf1N1B4_4063 - CrcB protein, at 4,517,619 to 4,517,993 _4063 Pf1N1B4_4064 - Seryl-tRNA synthetase (EC 6.1.1.11), at 4,518,009 to 4,519,289 _4064 Position (kb) 4517 4518Strain fitness (log2 ratio) -2 -1 0 1at 4516.768 kb on + strand, within Pf1N1B4_4062at 4516.769 kb on - strand, within Pf1N1B4_4062at 4517.041 kb on + strand, within Pf1N1B4_4062at 4517.042 kb on - strand, within Pf1N1B4_4062at 4517.042 kb on - strand, within Pf1N1B4_4062at 4517.065 kb on - strand, within Pf1N1B4_4062at 4517.143 kb on + strand, within Pf1N1B4_4062at 4517.143 kb on + strand, within Pf1N1B4_4062at 4517.144 kb on - strand, within Pf1N1B4_4062at 4517.287 kb on - strand, within Pf1N1B4_4062at 4517.290 kb on + strand, within Pf1N1B4_4062at 4517.291 kb on - strand, within Pf1N1B4_4062at 4517.291 kb on - strand, within Pf1N1B4_4062at 4517.323 kb on + strand, within Pf1N1B4_4062at 4517.324 kb on - strand, within Pf1N1B4_4062at 4517.324 kb on - strand, within Pf1N1B4_4062at 4517.488 kb on + strandat 4517.489 kb on - strandat 4517.489 kb on - strandat 4517.489 kb on - strandat 4517.594 kb on + strandat 4517.595 kb on - strandat 4517.721 kb on + strand, within Pf1N1B4_4063at 4517.721 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.773 kb on + strand, within Pf1N1B4_4063at 4517.941 kb on + strand, within Pf1N1B4_4063

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,516,768 + Pf1N1B4_4062 0.36 -1.1
4,516,769 - Pf1N1B4_4062 0.36 +0.4
4,517,041 + Pf1N1B4_4062 0.56 -0.3
4,517,042 - Pf1N1B4_4062 0.56 -0.6
4,517,042 - Pf1N1B4_4062 0.56 -0.1
4,517,065 - Pf1N1B4_4062 0.58 +0.2
4,517,143 + Pf1N1B4_4062 0.64 +0.2
4,517,143 + Pf1N1B4_4062 0.64 +0.4
4,517,144 - Pf1N1B4_4062 0.64 +0.4
4,517,287 - Pf1N1B4_4062 0.75 -0.6
4,517,290 + Pf1N1B4_4062 0.75 -2.3
4,517,291 - Pf1N1B4_4062 0.75 -0.4
4,517,291 - Pf1N1B4_4062 0.75 -0.9
4,517,323 + Pf1N1B4_4062 0.78 +0.4
4,517,324 - Pf1N1B4_4062 0.78 -0.4
4,517,324 - Pf1N1B4_4062 0.78 -1.1
4,517,488 + -1.0
4,517,489 - +0.6
4,517,489 - -0.1
4,517,489 - +1.0
4,517,594 + +0.1
4,517,595 - -1.4
4,517,721 + Pf1N1B4_4063 0.27 +0.4
4,517,721 + Pf1N1B4_4063 0.27 -0.6
4,517,773 + Pf1N1B4_4063 0.41 -0.6
4,517,773 + Pf1N1B4_4063 0.41 -0.4
4,517,773 + Pf1N1B4_4063 0.41 -1.4
4,517,773 + Pf1N1B4_4063 0.41 -1.4
4,517,773 + Pf1N1B4_4063 0.41 -1.0
4,517,773 + Pf1N1B4_4063 0.41 -1.6
4,517,941 + Pf1N1B4_4063 0.86 -0.0

Or see this region's nucleotide sequence