Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1063 and Pf1N1B4_1064 are separated by 13 nucleotides Pf1N1B4_1064 and Pf1N1B4_1065 are separated by 125 nucleotides Pf1N1B4_1065 and Pf1N1B4_1066 are separated by 2 nucleotides
Pf1N1B4_1063 - Ferrichrome-iron receptor, at 1,197,650 to 1,199,536
_1063
Pf1N1B4_1064 - Additional periplasmic component NikK of nickel ECF transporter, at 1,199,550 to 1,200,269
_1064
Pf1N1B4_1065 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 1,200,395 to 1,201,447
_1065
Pf1N1B4_1066 - Histidinol dehydrogenase (EC 1.1.1.23), at 1,201,450 to 1,202,775
_1066
Position (kb)
1200
1201
1202 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1199.453 kb on + strand at 1199.453 kb on + strand at 1199.453 kb on + strand at 1199.453 kb on + strand at 1199.454 kb on - strand at 1199.454 kb on - strand at 1199.454 kb on - strand at 1199.454 kb on - strand at 1199.469 kb on - strand at 1199.534 kb on + strand at 1199.560 kb on + strand at 1199.560 kb on + strand at 1199.561 kb on - strand at 1199.655 kb on + strand, within Pf1N1B4_1064 at 1199.656 kb on - strand, within Pf1N1B4_1064 at 1199.656 kb on - strand, within Pf1N1B4_1064 at 1199.716 kb on - strand, within Pf1N1B4_1064 at 1199.716 kb on - strand, within Pf1N1B4_1064 at 1199.716 kb on - strand, within Pf1N1B4_1064 at 1199.716 kb on - strand, within Pf1N1B4_1064 at 1199.847 kb on - strand, within Pf1N1B4_1064 at 1199.913 kb on + strand, within Pf1N1B4_1064 at 1199.914 kb on - strand, within Pf1N1B4_1064 at 1199.928 kb on + strand, within Pf1N1B4_1064 at 1199.928 kb on + strand, within Pf1N1B4_1064 at 1200.098 kb on + strand, within Pf1N1B4_1064 at 1200.139 kb on + strand, within Pf1N1B4_1064 at 1200.139 kb on + strand, within Pf1N1B4_1064 at 1200.139 kb on + strand, within Pf1N1B4_1064 at 1200.139 kb on + strand, within Pf1N1B4_1064 at 1200.139 kb on + strand, within Pf1N1B4_1064 at 1200.140 kb on - strand, within Pf1N1B4_1064 at 1200.140 kb on - strand, within Pf1N1B4_1064 at 1200.140 kb on - strand, within Pf1N1B4_1064 at 1200.140 kb on - strand, within Pf1N1B4_1064 at 1200.149 kb on + strand, within Pf1N1B4_1064 at 1200.396 kb on + strand at 1200.397 kb on - strand at 1200.397 kb on - strand at 1200.397 kb on - strand at 1200.397 kb on - strand at 1200.868 kb on + strand, within Pf1N1B4_1065 at 1200.868 kb on + strand at 1200.869 kb on - strand, within Pf1N1B4_1065 at 1200.869 kb on - strand, within Pf1N1B4_1065 at 1200.897 kb on + strand, within Pf1N1B4_1065 at 1200.897 kb on + strand, within Pf1N1B4_1065 at 1200.897 kb on + strand, within Pf1N1B4_1065 at 1200.897 kb on + strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1200.898 kb on - strand, within Pf1N1B4_1065 at 1201.086 kb on + strand at 1201.087 kb on - strand, within Pf1N1B4_1065 at 1201.117 kb on - strand, within Pf1N1B4_1065 at 1201.230 kb on + strand, within Pf1N1B4_1065 at 1201.230 kb on + strand, within Pf1N1B4_1065 at 1201.231 kb on - strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.233 kb on + strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.234 kb on - strand, within Pf1N1B4_1065 at 1201.404 kb on + strand at 1201.404 kb on + strand at 1201.404 kb on + strand at 1201.404 kb on + strand at 1201.404 kb on + strand at 1201.404 kb on + strand at 1201.405 kb on - strand at 1201.441 kb on + strand at 1201.442 kb on - strand at 1201.442 kb on - strand at 1201.442 kb on - strand at 1201.442 kb on - strand at 1201.464 kb on + strand at 1201.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 1,199,453 + -0.0 1,199,453 + +0.1 1,199,453 + -0.5 1,199,453 + -1.4 1,199,454 - -0.2 1,199,454 - -0.9 1,199,454 - +0.0 1,199,454 - -0.6 1,199,469 - +0.0 1,199,534 + -1.0 1,199,560 + +1.0 1,199,560 + -1.1 1,199,561 - -0.6 1,199,655 + Pf1N1B4_1064 0.15 +1.5 1,199,656 - Pf1N1B4_1064 0.15 -0.5 1,199,656 - Pf1N1B4_1064 0.15 +0.5 1,199,716 - Pf1N1B4_1064 0.23 -0.3 1,199,716 - Pf1N1B4_1064 0.23 -0.0 1,199,716 - Pf1N1B4_1064 0.23 +0.1 1,199,716 - Pf1N1B4_1064 0.23 +1.3 1,199,847 - Pf1N1B4_1064 0.41 -1.9 1,199,913 + Pf1N1B4_1064 0.50 -0.7 1,199,914 - Pf1N1B4_1064 0.51 -0.5 1,199,928 + Pf1N1B4_1064 0.53 -1.0 1,199,928 + Pf1N1B4_1064 0.53 +0.6 1,200,098 + Pf1N1B4_1064 0.76 -1.4 1,200,139 + Pf1N1B4_1064 0.82 +0.5 1,200,139 + Pf1N1B4_1064 0.82 -0.3 1,200,139 + Pf1N1B4_1064 0.82 -0.4 1,200,139 + Pf1N1B4_1064 0.82 -0.5 1,200,139 + Pf1N1B4_1064 0.82 +0.3 1,200,140 - Pf1N1B4_1064 0.82 +0.7 1,200,140 - Pf1N1B4_1064 0.82 -0.7 1,200,140 - Pf1N1B4_1064 0.82 -0.5 1,200,140 - Pf1N1B4_1064 0.82 -0.6 1,200,149 + Pf1N1B4_1064 0.83 -0.8 1,200,396 + +0.4 1,200,397 - +0.7 1,200,397 - +0.3 1,200,397 - +0.9 1,200,397 - -1.3 1,200,868 + Pf1N1B4_1065 0.45 -0.6 1,200,868 + -0.5 1,200,869 - Pf1N1B4_1065 0.45 -2.4 1,200,869 - Pf1N1B4_1065 0.45 -1.6 1,200,897 + Pf1N1B4_1065 0.48 -2.2 1,200,897 + Pf1N1B4_1065 0.48 -2.4 1,200,897 + Pf1N1B4_1065 0.48 -1.0 1,200,897 + Pf1N1B4_1065 0.48 +0.8 1,200,898 - Pf1N1B4_1065 0.48 +0.3 1,200,898 - Pf1N1B4_1065 0.48 -1.4 1,200,898 - Pf1N1B4_1065 0.48 -0.3 1,200,898 - Pf1N1B4_1065 0.48 -3.0 1,200,898 - Pf1N1B4_1065 0.48 -1.9 1,200,898 - Pf1N1B4_1065 0.48 +0.8 1,200,898 - Pf1N1B4_1065 0.48 +0.1 1,201,086 + -1.0 1,201,087 - Pf1N1B4_1065 0.66 -1.7 1,201,117 - Pf1N1B4_1065 0.69 -0.7 1,201,230 + Pf1N1B4_1065 0.79 -0.3 1,201,230 + Pf1N1B4_1065 0.79 -1.9 1,201,231 - Pf1N1B4_1065 0.79 -0.0 1,201,233 + Pf1N1B4_1065 0.80 -0.3 1,201,233 + Pf1N1B4_1065 0.80 -1.2 1,201,233 + Pf1N1B4_1065 0.80 -1.9 1,201,233 + Pf1N1B4_1065 0.80 -2.0 1,201,233 + Pf1N1B4_1065 0.80 -1.5 1,201,233 + Pf1N1B4_1065 0.80 -1.0 1,201,234 - Pf1N1B4_1065 0.80 -0.0 1,201,234 - Pf1N1B4_1065 0.80 -0.9 1,201,234 - Pf1N1B4_1065 0.80 -1.0 1,201,234 - Pf1N1B4_1065 0.80 -0.7 1,201,234 - Pf1N1B4_1065 0.80 -1.0 1,201,234 - Pf1N1B4_1065 0.80 +0.1 1,201,234 - Pf1N1B4_1065 0.80 +0.3 1,201,234 - Pf1N1B4_1065 0.80 -1.3 1,201,234 - Pf1N1B4_1065 0.80 -2.4 1,201,404 + -0.8 1,201,404 + -1.1 1,201,404 + -0.7 1,201,404 + -1.3 1,201,404 + +0.2 1,201,404 + -0.5 1,201,405 - +0.1 1,201,441 + -1.7 1,201,442 - -2.2 1,201,442 - -2.2 1,201,442 - -2.2 1,201,442 - -0.5 1,201,464 + -1.7 1,201,464 + -0.3
Or see this region's nucleotide sequence