Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1065

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1063 and Pf1N1B4_1064 are separated by 13 nucleotidesPf1N1B4_1064 and Pf1N1B4_1065 are separated by 125 nucleotidesPf1N1B4_1065 and Pf1N1B4_1066 are separated by 2 nucleotides Pf1N1B4_1063 - Ferrichrome-iron receptor, at 1,197,650 to 1,199,536 _1063 Pf1N1B4_1064 - Additional periplasmic component NikK of nickel ECF transporter, at 1,199,550 to 1,200,269 _1064 Pf1N1B4_1065 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 1,200,395 to 1,201,447 _1065 Pf1N1B4_1066 - Histidinol dehydrogenase (EC 1.1.1.23), at 1,201,450 to 1,202,775 _1066 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -3 -2 -1 0 1at 1199.453 kb on + strandat 1199.453 kb on + strandat 1199.453 kb on + strandat 1199.453 kb on + strandat 1199.454 kb on - strandat 1199.454 kb on - strandat 1199.454 kb on - strandat 1199.454 kb on - strandat 1199.469 kb on - strandat 1199.534 kb on + strandat 1199.560 kb on + strandat 1199.560 kb on + strandat 1199.561 kb on - strandat 1199.655 kb on + strand, within Pf1N1B4_1064at 1199.656 kb on - strand, within Pf1N1B4_1064at 1199.656 kb on - strand, within Pf1N1B4_1064at 1199.716 kb on - strand, within Pf1N1B4_1064at 1199.716 kb on - strand, within Pf1N1B4_1064at 1199.716 kb on - strand, within Pf1N1B4_1064at 1199.716 kb on - strand, within Pf1N1B4_1064at 1199.847 kb on - strand, within Pf1N1B4_1064at 1199.913 kb on + strand, within Pf1N1B4_1064at 1199.914 kb on - strand, within Pf1N1B4_1064at 1199.928 kb on + strand, within Pf1N1B4_1064at 1199.928 kb on + strand, within Pf1N1B4_1064at 1200.098 kb on + strand, within Pf1N1B4_1064at 1200.139 kb on + strand, within Pf1N1B4_1064at 1200.139 kb on + strand, within Pf1N1B4_1064at 1200.139 kb on + strand, within Pf1N1B4_1064at 1200.139 kb on + strand, within Pf1N1B4_1064at 1200.139 kb on + strand, within Pf1N1B4_1064at 1200.140 kb on - strand, within Pf1N1B4_1064at 1200.140 kb on - strand, within Pf1N1B4_1064at 1200.140 kb on - strand, within Pf1N1B4_1064at 1200.140 kb on - strand, within Pf1N1B4_1064at 1200.149 kb on + strand, within Pf1N1B4_1064at 1200.396 kb on + strandat 1200.397 kb on - strandat 1200.397 kb on - strandat 1200.397 kb on - strandat 1200.397 kb on - strandat 1200.868 kb on + strand, within Pf1N1B4_1065at 1200.868 kb on + strandat 1200.869 kb on - strand, within Pf1N1B4_1065at 1200.869 kb on - strand, within Pf1N1B4_1065at 1200.897 kb on + strand, within Pf1N1B4_1065at 1200.897 kb on + strand, within Pf1N1B4_1065at 1200.897 kb on + strand, within Pf1N1B4_1065at 1200.897 kb on + strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1200.898 kb on - strand, within Pf1N1B4_1065at 1201.086 kb on + strandat 1201.087 kb on - strand, within Pf1N1B4_1065at 1201.117 kb on - strand, within Pf1N1B4_1065at 1201.230 kb on + strand, within Pf1N1B4_1065at 1201.230 kb on + strand, within Pf1N1B4_1065at 1201.231 kb on - strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.233 kb on + strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.234 kb on - strand, within Pf1N1B4_1065at 1201.404 kb on + strandat 1201.404 kb on + strandat 1201.404 kb on + strandat 1201.404 kb on + strandat 1201.404 kb on + strandat 1201.404 kb on + strandat 1201.405 kb on - strandat 1201.441 kb on + strandat 1201.442 kb on - strandat 1201.442 kb on - strandat 1201.442 kb on - strandat 1201.442 kb on - strandat 1201.464 kb on + strandat 1201.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,199,453 + -0.0
1,199,453 + +0.1
1,199,453 + -0.5
1,199,453 + -1.4
1,199,454 - -0.2
1,199,454 - -0.9
1,199,454 - +0.0
1,199,454 - -0.6
1,199,469 - +0.0
1,199,534 + -1.0
1,199,560 + +1.0
1,199,560 + -1.1
1,199,561 - -0.6
1,199,655 + Pf1N1B4_1064 0.15 +1.5
1,199,656 - Pf1N1B4_1064 0.15 -0.5
1,199,656 - Pf1N1B4_1064 0.15 +0.5
1,199,716 - Pf1N1B4_1064 0.23 -0.3
1,199,716 - Pf1N1B4_1064 0.23 -0.0
1,199,716 - Pf1N1B4_1064 0.23 +0.1
1,199,716 - Pf1N1B4_1064 0.23 +1.3
1,199,847 - Pf1N1B4_1064 0.41 -1.9
1,199,913 + Pf1N1B4_1064 0.50 -0.7
1,199,914 - Pf1N1B4_1064 0.51 -0.5
1,199,928 + Pf1N1B4_1064 0.53 -1.0
1,199,928 + Pf1N1B4_1064 0.53 +0.6
1,200,098 + Pf1N1B4_1064 0.76 -1.4
1,200,139 + Pf1N1B4_1064 0.82 +0.5
1,200,139 + Pf1N1B4_1064 0.82 -0.3
1,200,139 + Pf1N1B4_1064 0.82 -0.4
1,200,139 + Pf1N1B4_1064 0.82 -0.5
1,200,139 + Pf1N1B4_1064 0.82 +0.3
1,200,140 - Pf1N1B4_1064 0.82 +0.7
1,200,140 - Pf1N1B4_1064 0.82 -0.7
1,200,140 - Pf1N1B4_1064 0.82 -0.5
1,200,140 - Pf1N1B4_1064 0.82 -0.6
1,200,149 + Pf1N1B4_1064 0.83 -0.8
1,200,396 + +0.4
1,200,397 - +0.7
1,200,397 - +0.3
1,200,397 - +0.9
1,200,397 - -1.3
1,200,868 + Pf1N1B4_1065 0.45 -0.6
1,200,868 + -0.5
1,200,869 - Pf1N1B4_1065 0.45 -2.4
1,200,869 - Pf1N1B4_1065 0.45 -1.6
1,200,897 + Pf1N1B4_1065 0.48 -2.2
1,200,897 + Pf1N1B4_1065 0.48 -2.4
1,200,897 + Pf1N1B4_1065 0.48 -1.0
1,200,897 + Pf1N1B4_1065 0.48 +0.8
1,200,898 - Pf1N1B4_1065 0.48 +0.3
1,200,898 - Pf1N1B4_1065 0.48 -1.4
1,200,898 - Pf1N1B4_1065 0.48 -0.3
1,200,898 - Pf1N1B4_1065 0.48 -3.0
1,200,898 - Pf1N1B4_1065 0.48 -1.9
1,200,898 - Pf1N1B4_1065 0.48 +0.8
1,200,898 - Pf1N1B4_1065 0.48 +0.1
1,201,086 + -1.0
1,201,087 - Pf1N1B4_1065 0.66 -1.7
1,201,117 - Pf1N1B4_1065 0.69 -0.7
1,201,230 + Pf1N1B4_1065 0.79 -0.3
1,201,230 + Pf1N1B4_1065 0.79 -1.9
1,201,231 - Pf1N1B4_1065 0.79 -0.0
1,201,233 + Pf1N1B4_1065 0.80 -0.3
1,201,233 + Pf1N1B4_1065 0.80 -1.2
1,201,233 + Pf1N1B4_1065 0.80 -1.9
1,201,233 + Pf1N1B4_1065 0.80 -2.0
1,201,233 + Pf1N1B4_1065 0.80 -1.5
1,201,233 + Pf1N1B4_1065 0.80 -1.0
1,201,234 - Pf1N1B4_1065 0.80 -0.0
1,201,234 - Pf1N1B4_1065 0.80 -0.9
1,201,234 - Pf1N1B4_1065 0.80 -1.0
1,201,234 - Pf1N1B4_1065 0.80 -0.7
1,201,234 - Pf1N1B4_1065 0.80 -1.0
1,201,234 - Pf1N1B4_1065 0.80 +0.1
1,201,234 - Pf1N1B4_1065 0.80 +0.3
1,201,234 - Pf1N1B4_1065 0.80 -1.3
1,201,234 - Pf1N1B4_1065 0.80 -2.4
1,201,404 + -0.8
1,201,404 + -1.1
1,201,404 + -0.7
1,201,404 + -1.3
1,201,404 + +0.2
1,201,404 + -0.5
1,201,405 - +0.1
1,201,441 + -1.7
1,201,442 - -2.2
1,201,442 - -2.2
1,201,442 - -2.2
1,201,442 - -0.5
1,201,464 + -1.7
1,201,464 + -0.3

Or see this region's nucleotide sequence