Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21990 and BWI76_RS21995 are separated by 149 nucleotides BWI76_RS21995 and BWI76_RS22000 are separated by 9 nucleotides BWI76_RS22000 and BWI76_RS22005 are separated by 91 nucleotides BWI76_RS22005 and BWI76_RS22010 are separated by 46 nucleotides
BWI76_RS21990: BWI76_RS21990 - ATPase AAA, at 4,594,709 to 4,596,493
_RS21990
BWI76_RS21995: BWI76_RS21995 - transcriptional regulator, at 4,596,643 to 4,596,942
_RS21995
BWI76_RS22000: BWI76_RS22000 - hypothetical protein, at 4,596,952 to 4,597,473
_RS22000
BWI76_RS22005: BWI76_RS22005 - hypothetical protein, at 4,597,565 to 4,597,744
_RS22005
BWI76_RS22010: BWI76_RS22010 - DNA binding protein, nucleoid-associated, at 4,597,791 to 4,598,192
_RS22010
Position (kb)
4596
4597 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4595.649 kb on - strand, within BWI76_RS21990 at 4595.693 kb on + strand, within BWI76_RS21990 at 4595.758 kb on - strand, within BWI76_RS21990 at 4595.824 kb on - strand, within BWI76_RS21990 at 4595.831 kb on + strand, within BWI76_RS21990 at 4595.942 kb on - strand, within BWI76_RS21990 at 4596.059 kb on + strand, within BWI76_RS21990 at 4596.086 kb on + strand, within BWI76_RS21990 at 4596.205 kb on - strand, within BWI76_RS21990 at 4596.225 kb on - strand, within BWI76_RS21990 at 4596.362 kb on - strand at 4596.438 kb on - strand at 4596.453 kb on + strand at 4596.585 kb on - strand at 4596.666 kb on + strand at 4596.708 kb on - strand, within BWI76_RS21995 at 4596.787 kb on + strand, within BWI76_RS21995 at 4596.857 kb on + strand, within BWI76_RS21995 at 4596.944 kb on - strand at 4596.956 kb on - strand at 4597.115 kb on + strand, within BWI76_RS22000 at 4597.164 kb on + strand, within BWI76_RS22000 at 4597.164 kb on + strand, within BWI76_RS22000 at 4597.164 kb on + strand, within BWI76_RS22000 at 4597.172 kb on - strand, within BWI76_RS22000 at 4597.172 kb on - strand, within BWI76_RS22000 at 4597.318 kb on + strand, within BWI76_RS22000 at 4597.339 kb on + strand, within BWI76_RS22000 at 4597.404 kb on - strand, within BWI76_RS22000 at 4597.475 kb on - strand at 4597.475 kb on - strand at 4597.493 kb on + strand at 4597.501 kb on - strand at 4597.524 kb on - strand at 4597.547 kb on + strand at 4597.547 kb on + strand at 4597.547 kb on + strand at 4597.555 kb on - strand at 4597.567 kb on + strand at 4597.584 kb on + strand, within BWI76_RS22005 at 4597.588 kb on - strand, within BWI76_RS22005 at 4597.612 kb on + strand, within BWI76_RS22005 at 4597.613 kb on - strand, within BWI76_RS22005 at 4597.620 kb on - strand, within BWI76_RS22005 at 4597.627 kb on + strand, within BWI76_RS22005 at 4597.642 kb on + strand, within BWI76_RS22005 at 4597.650 kb on - strand, within BWI76_RS22005 at 4597.657 kb on + strand, within BWI76_RS22005 at 4597.662 kb on + strand, within BWI76_RS22005 at 4597.681 kb on - strand, within BWI76_RS22005 at 4597.743 kb on + strand at 4597.743 kb on + strand at 4597.751 kb on - strand at 4597.751 kb on - strand at 4597.766 kb on - strand at 4597.766 kb on - strand at 4597.774 kb on + strand at 4597.797 kb on - strand at 4597.850 kb on + strand, within BWI76_RS22010 at 4597.850 kb on + strand, within BWI76_RS22010 at 4597.852 kb on - strand, within BWI76_RS22010 at 4597.857 kb on + strand, within BWI76_RS22010 at 4597.857 kb on + strand, within BWI76_RS22010 at 4597.857 kb on + strand, within BWI76_RS22010 at 4597.858 kb on - strand, within BWI76_RS22010 at 4597.865 kb on - strand, within BWI76_RS22010 at 4597.865 kb on - strand, within BWI76_RS22010 at 4597.865 kb on - strand, within BWI76_RS22010 at 4597.867 kb on + strand, within BWI76_RS22010 at 4597.880 kb on - strand, within BWI76_RS22010 at 4597.890 kb on - strand, within BWI76_RS22010 at 4597.920 kb on + strand, within BWI76_RS22010
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,595,649 - BWI76_RS21990 0.53 -0.1 4,595,693 + BWI76_RS21990 0.55 -1.2 4,595,758 - BWI76_RS21990 0.59 -0.4 4,595,824 - BWI76_RS21990 0.62 -0.4 4,595,831 + BWI76_RS21990 0.63 +0.6 4,595,942 - BWI76_RS21990 0.69 -0.9 4,596,059 + BWI76_RS21990 0.76 -0.2 4,596,086 + BWI76_RS21990 0.77 -0.3 4,596,205 - BWI76_RS21990 0.84 -0.2 4,596,225 - BWI76_RS21990 0.85 +0.2 4,596,362 - -0.3 4,596,438 - -0.8 4,596,453 + -0.1 4,596,585 - +0.3 4,596,666 + +0.0 4,596,708 - BWI76_RS21995 0.22 +0.4 4,596,787 + BWI76_RS21995 0.48 +0.3 4,596,857 + BWI76_RS21995 0.71 +0.4 4,596,944 - -0.3 4,596,956 - +0.3 4,597,115 + BWI76_RS22000 0.31 +0.0 4,597,164 + BWI76_RS22000 0.41 -0.0 4,597,164 + BWI76_RS22000 0.41 -0.3 4,597,164 + BWI76_RS22000 0.41 -0.0 4,597,172 - BWI76_RS22000 0.42 -0.1 4,597,172 - BWI76_RS22000 0.42 +0.1 4,597,318 + BWI76_RS22000 0.70 +0.5 4,597,339 + BWI76_RS22000 0.74 -0.3 4,597,404 - BWI76_RS22000 0.87 +0.5 4,597,475 - +0.3 4,597,475 - +0.6 4,597,493 + -0.8 4,597,501 - -0.2 4,597,524 - -0.9 4,597,547 + +0.1 4,597,547 + +0.9 4,597,547 + -0.1 4,597,555 - -0.4 4,597,567 + +1.1 4,597,584 + BWI76_RS22005 0.11 +0.5 4,597,588 - BWI76_RS22005 0.13 -0.3 4,597,612 + BWI76_RS22005 0.26 +0.0 4,597,613 - BWI76_RS22005 0.27 +0.7 4,597,620 - BWI76_RS22005 0.31 -2.1 4,597,627 + BWI76_RS22005 0.34 +0.6 4,597,642 + BWI76_RS22005 0.43 -0.3 4,597,650 - BWI76_RS22005 0.47 +0.1 4,597,657 + BWI76_RS22005 0.51 +0.1 4,597,662 + BWI76_RS22005 0.54 +0.4 4,597,681 - BWI76_RS22005 0.64 +0.3 4,597,743 + +1.0 4,597,743 + +1.1 4,597,751 - +0.8 4,597,751 - +0.1 4,597,766 - +0.6 4,597,766 - -1.7 4,597,774 + +0.4 4,597,797 - -0.6 4,597,850 + BWI76_RS22010 0.15 +0.6 4,597,850 + BWI76_RS22010 0.15 -0.4 4,597,852 - BWI76_RS22010 0.15 +0.6 4,597,857 + BWI76_RS22010 0.16 +1.8 4,597,857 + BWI76_RS22010 0.16 -0.8 4,597,857 + BWI76_RS22010 0.16 -1.0 4,597,858 - BWI76_RS22010 0.17 +0.4 4,597,865 - BWI76_RS22010 0.18 +1.7 4,597,865 - BWI76_RS22010 0.18 -0.6 4,597,865 - BWI76_RS22010 0.18 -0.0 4,597,867 + BWI76_RS22010 0.19 -1.5 4,597,880 - BWI76_RS22010 0.22 -0.5 4,597,890 - BWI76_RS22010 0.25 -0.1 4,597,920 + BWI76_RS22010 0.32 -0.1
Or see this region's nucleotide sequence