Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14430

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14420 and BWI76_RS14425 are separated by 77 nucleotidesBWI76_RS14425 and BWI76_RS14430 are separated by 287 nucleotidesBWI76_RS14430 and BWI76_RS14435 are separated by 19 nucleotidesBWI76_RS14435 and BWI76_RS14440 are separated by 2 nucleotides BWI76_RS14420: BWI76_RS14420 - hypothetical protein, at 3,010,700 to 3,011,482 _RS14420 BWI76_RS14425: BWI76_RS14425 - hypothetical protein, at 3,011,560 to 3,011,739 _RS14425 BWI76_RS14430: BWI76_RS14430 - peptidase C45, at 3,012,027 to 3,013,049 _RS14430 BWI76_RS14435: BWI76_RS14435 - glutamine ABC transporter ATP-binding protein, at 3,013,069 to 3,013,791 _RS14435 BWI76_RS14440: BWI76_RS14440 - glutamine ABC transporter permease GlnP, at 3,013,794 to 3,014,450 _RS14440 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -2 -1 0 1 2at 3011.031 kb on - strand, within BWI76_RS14420at 3011.036 kb on - strand, within BWI76_RS14420at 3011.038 kb on - strand, within BWI76_RS14420at 3011.048 kb on - strand, within BWI76_RS14420at 3011.053 kb on - strand, within BWI76_RS14420at 3011.077 kb on - strand, within BWI76_RS14420at 3011.149 kb on + strand, within BWI76_RS14420at 3011.172 kb on + strand, within BWI76_RS14420at 3011.180 kb on - strand, within BWI76_RS14420at 3011.180 kb on - strand, within BWI76_RS14420at 3011.180 kb on - strand, within BWI76_RS14420at 3011.270 kb on + strand, within BWI76_RS14420at 3011.278 kb on - strand, within BWI76_RS14420at 3011.289 kb on - strand, within BWI76_RS14420at 3011.294 kb on - strand, within BWI76_RS14420at 3011.398 kb on - strand, within BWI76_RS14420at 3011.691 kb on - strand, within BWI76_RS14425at 3011.703 kb on - strand, within BWI76_RS14425at 3011.729 kb on - strandat 3011.754 kb on - strandat 3011.762 kb on - strandat 3011.775 kb on + strandat 3011.781 kb on - strandat 3011.852 kb on + strandat 3011.860 kb on - strandat 3011.873 kb on + strandat 3011.876 kb on - strandat 3011.898 kb on + strandat 3011.898 kb on + strandat 3011.898 kb on + strandat 3011.898 kb on + strandat 3011.928 kb on - strandat 3011.966 kb on + strandat 3011.979 kb on - strandat 3011.990 kb on + strandat 3011.990 kb on + strandat 3011.990 kb on + strandat 3011.998 kb on - strandat 3012.116 kb on - strandat 3012.239 kb on - strand, within BWI76_RS14430at 3012.280 kb on - strand, within BWI76_RS14430at 3012.362 kb on + strand, within BWI76_RS14430at 3012.372 kb on + strand, within BWI76_RS14430at 3012.380 kb on - strand, within BWI76_RS14430at 3012.386 kb on + strand, within BWI76_RS14430at 3012.420 kb on + strand, within BWI76_RS14430at 3012.659 kb on + strand, within BWI76_RS14430at 3013.010 kb on - strandat 3013.134 kb on - strandat 3013.181 kb on - strand, within BWI76_RS14435at 3013.705 kb on - strand, within BWI76_RS14435at 3013.746 kb on - strandat 3013.847 kb on + strandat 3013.849 kb on - strandat 3013.879 kb on + strand, within BWI76_RS14440at 3013.879 kb on + strand, within BWI76_RS14440at 3013.882 kb on - strand, within BWI76_RS14440at 3013.882 kb on - strand, within BWI76_RS14440at 3013.887 kb on - strand, within BWI76_RS14440at 3013.887 kb on - strand, within BWI76_RS14440at 3013.887 kb on - strand, within BWI76_RS14440at 3013.887 kb on - strand, within BWI76_RS14440at 3013.894 kb on - strand, within BWI76_RS14440at 3013.962 kb on - strand, within BWI76_RS14440at 3013.967 kb on - strand, within BWI76_RS14440at 3013.981 kb on - strand, within BWI76_RS14440at 3014.019 kb on + strand, within BWI76_RS14440at 3014.019 kb on + strand, within BWI76_RS14440at 3014.019 kb on + strand, within BWI76_RS14440at 3014.041 kb on - strand, within BWI76_RS14440at 3014.046 kb on + strand, within BWI76_RS14440

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,011,031 - BWI76_RS14420 0.42 +0.4
3,011,036 - BWI76_RS14420 0.43 -1.5
3,011,038 - BWI76_RS14420 0.43 -0.1
3,011,048 - BWI76_RS14420 0.44 -1.3
3,011,053 - BWI76_RS14420 0.45 -0.5
3,011,077 - BWI76_RS14420 0.48 +1.7
3,011,149 + BWI76_RS14420 0.57 +0.3
3,011,172 + BWI76_RS14420 0.60 -0.7
3,011,180 - BWI76_RS14420 0.61 -0.1
3,011,180 - BWI76_RS14420 0.61 -0.5
3,011,180 - BWI76_RS14420 0.61 +0.8
3,011,270 + BWI76_RS14420 0.73 -0.9
3,011,278 - BWI76_RS14420 0.74 -0.1
3,011,289 - BWI76_RS14420 0.75 -1.7
3,011,294 - BWI76_RS14420 0.76 +0.5
3,011,398 - BWI76_RS14420 0.89 -0.9
3,011,691 - BWI76_RS14425 0.73 +0.1
3,011,703 - BWI76_RS14425 0.79 +1.5
3,011,729 - -1.5
3,011,754 - -1.5
3,011,762 - -1.7
3,011,775 + -0.2
3,011,781 - +0.2
3,011,852 + -0.5
3,011,860 - -0.8
3,011,873 + +0.9
3,011,876 - +0.4
3,011,898 + +1.5
3,011,898 + +0.6
3,011,898 + -0.6
3,011,898 + -0.4
3,011,928 - -0.1
3,011,966 + -0.1
3,011,979 - -0.6
3,011,990 + -0.6
3,011,990 + +0.7
3,011,990 + -0.1
3,011,998 - -0.0
3,012,116 - +0.3
3,012,239 - BWI76_RS14430 0.21 -1.1
3,012,280 - BWI76_RS14430 0.25 +0.4
3,012,362 + BWI76_RS14430 0.33 +1.2
3,012,372 + BWI76_RS14430 0.34 -0.1
3,012,380 - BWI76_RS14430 0.35 +0.2
3,012,386 + BWI76_RS14430 0.35 -0.3
3,012,420 + BWI76_RS14430 0.38 +0.2
3,012,659 + BWI76_RS14430 0.62 -2.0
3,013,010 - -0.1
3,013,134 - -0.2
3,013,181 - BWI76_RS14435 0.15 -0.2
3,013,705 - BWI76_RS14435 0.88 -0.6
3,013,746 - -0.5
3,013,847 + +0.9
3,013,849 - +0.2
3,013,879 + BWI76_RS14440 0.13 -0.3
3,013,879 + BWI76_RS14440 0.13 -0.5
3,013,882 - BWI76_RS14440 0.13 +0.3
3,013,882 - BWI76_RS14440 0.13 -0.4
3,013,887 - BWI76_RS14440 0.14 +0.3
3,013,887 - BWI76_RS14440 0.14 -0.3
3,013,887 - BWI76_RS14440 0.14 +0.1
3,013,887 - BWI76_RS14440 0.14 -0.3
3,013,894 - BWI76_RS14440 0.15 -0.5
3,013,962 - BWI76_RS14440 0.26 +0.4
3,013,967 - BWI76_RS14440 0.26 +0.4
3,013,981 - BWI76_RS14440 0.28 +0.2
3,014,019 + BWI76_RS14440 0.34 -1.3
3,014,019 + BWI76_RS14440 0.34 +0.8
3,014,019 + BWI76_RS14440 0.34 +1.8
3,014,041 - BWI76_RS14440 0.38 -0.7
3,014,046 + BWI76_RS14440 0.38 +0.7

Or see this region's nucleotide sequence