Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04700

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS04695 and BWI76_RS04700 are separated by 2 nucleotidesBWI76_RS04700 and BWI76_RS04705 are separated by 180 nucleotides BWI76_RS04695: BWI76_RS04695 - acetolactate synthase 3 large subunit, at 979,896 to 981,620 _RS04695 BWI76_RS04700: BWI76_RS04700 - acetolactate synthase small subunit, at 981,623 to 982,114 _RS04700 BWI76_RS04705: BWI76_RS04705 - DNA-binding transcriptional regulator FruR, at 982,295 to 983,299 _RS04705 Position (kb) 981 982 983Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 980.693 kb on + strandat 980.695 kb on + strand, within BWI76_RS04695at 980.773 kb on + strand, within BWI76_RS04695at 980.801 kb on - strand, within BWI76_RS04695at 980.887 kb on + strandat 980.981 kb on - strand, within BWI76_RS04695at 981.034 kb on - strand, within BWI76_RS04695at 981.087 kb on + strand, within BWI76_RS04695at 981.107 kb on + strand, within BWI76_RS04695at 981.115 kb on - strand, within BWI76_RS04695at 981.115 kb on - strand, within BWI76_RS04695at 981.115 kb on - strand, within BWI76_RS04695at 981.274 kb on - strand, within BWI76_RS04695at 981.303 kb on + strand, within BWI76_RS04695at 981.351 kb on + strand, within BWI76_RS04695at 981.364 kb on - strand, within BWI76_RS04695at 981.388 kb on - strand, within BWI76_RS04695at 981.388 kb on - strand, within BWI76_RS04695at 981.542 kb on - strandat 981.551 kb on + strandat 981.551 kb on + strandat 981.551 kb on + strandat 981.559 kb on - strandat 981.593 kb on - strandat 981.617 kb on - strandat 981.665 kb on + strandat 981.801 kb on + strand, within BWI76_RS04700at 981.884 kb on - strand, within BWI76_RS04700at 982.063 kb on + strand, within BWI76_RS04700at 982.068 kb on + strandat 982.222 kb on + strandat 982.222 kb on + strandat 982.340 kb on + strandat 982.631 kb on + strand, within BWI76_RS04705at 982.647 kb on - strand, within BWI76_RS04705at 982.684 kb on - strand, within BWI76_RS04705at 982.730 kb on + strand, within BWI76_RS04705at 982.730 kb on + strand, within BWI76_RS04705at 982.757 kb on + strand, within BWI76_RS04705at 982.789 kb on - strand, within BWI76_RS04705at 983.020 kb on + strand, within BWI76_RS04705at 983.028 kb on - strand, within BWI76_RS04705at 983.066 kb on - strand, within BWI76_RS04705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
980,693 + -0.5
980,695 + BWI76_RS04695 0.46 +0.0
980,773 + BWI76_RS04695 0.51 +0.5
980,801 - BWI76_RS04695 0.52 +0.3
980,887 + +1.5
980,981 - BWI76_RS04695 0.63 +0.2
981,034 - BWI76_RS04695 0.66 -2.0
981,087 + BWI76_RS04695 0.69 -0.5
981,107 + BWI76_RS04695 0.70 -0.6
981,115 - BWI76_RS04695 0.71 +0.4
981,115 - BWI76_RS04695 0.71 -0.3
981,115 - BWI76_RS04695 0.71 +0.3
981,274 - BWI76_RS04695 0.80 +0.0
981,303 + BWI76_RS04695 0.82 -0.7
981,351 + BWI76_RS04695 0.84 -0.1
981,364 - BWI76_RS04695 0.85 +0.1
981,388 - BWI76_RS04695 0.86 +0.3
981,388 - BWI76_RS04695 0.86 -0.2
981,542 - +0.1
981,551 + -0.7
981,551 + +0.5
981,551 + -0.3
981,559 - +0.0
981,593 - -0.4
981,617 - +0.5
981,665 + -0.4
981,801 + BWI76_RS04700 0.36 +1.4
981,884 - BWI76_RS04700 0.53 +0.6
982,063 + BWI76_RS04700 0.89 -0.1
982,068 + +0.5
982,222 + -0.2
982,222 + -0.5
982,340 + -2.0
982,631 + BWI76_RS04705 0.33 -3.8
982,647 - BWI76_RS04705 0.35 -3.7
982,684 - BWI76_RS04705 0.39 -1.0
982,730 + BWI76_RS04705 0.43 -5.7
982,730 + BWI76_RS04705 0.43 -0.5
982,757 + BWI76_RS04705 0.46 -2.7
982,789 - BWI76_RS04705 0.49 -1.5
983,020 + BWI76_RS04705 0.72 -3.3
983,028 - BWI76_RS04705 0.73 -4.4
983,066 - BWI76_RS04705 0.77 -0.7

Or see this region's nucleotide sequence